Wall clock time and date at job start Wed Apr 1 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32999 * 119.99709 * 2 1 4 4 C 1.50706 * 119.99452 * 180.02562 * 3 2 1 5 5 C 1.47097 * 120.00340 * 0.02562 * 3 2 1 6 6 O 1.21621 * 119.99695 * 37.17441 * 5 3 2 7 7 N 1.34770 * 120.00419 * 217.16940 * 5 3 2 8 8 C 1.46502 * 119.99676 * 349.08978 * 7 5 3 9 9 C 1.46498 * 120.00122 * 169.08866 * 7 5 3 10 10 C 1.53933 * 113.82889 * 141.32886 * 9 7 5 11 11 N 1.47959 * 86.18478 * 90.64740 * 10 9 7 12 12 C 1.46901 * 110.99920 * 137.57979 * 11 10 9 13 13 C 1.50694 * 109.47148 * 90.64551 * 12 11 10 14 14 C 1.38304 * 119.92967 * 269.72677 * 13 12 11 15 15 C 1.38100 * 120.06793 * 179.72460 * 14 13 12 16 16 C 1.38879 * 119.92992 * 0.52097 * 15 14 13 17 17 O 1.35752 * 120.06944 * 179.72842 * 16 15 14 18 18 C 1.34825 * 117.00151 * 185.92733 * 17 16 15 19 19 H 1.07998 * 120.00382 * 5.04697 * 18 17 16 20 20 C 1.38659 * 120.00106 * 185.04304 * 18 17 16 21 21 N 1.31561 * 119.99808 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99884 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47190 * 89.99878 * 22 20 18 24 24 H 1.48506 * 109.46939 * 209.99601 * 22 20 18 25 25 H 1.48498 * 109.47471 * 329.99638 * 22 20 18 26 26 C 1.38876 * 119.86292 * 359.75240 * 16 15 14 27 27 C 1.38096 * 119.93358 * 359.97438 * 26 16 15 28 28 C 1.47964 * 90.76036 * 24.68959 * 11 10 9 29 29 H 1.08991 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46814 * 299.99424 * 1 2 3 31 31 H 1.08991 * 109.47196 * 59.99520 * 1 2 3 32 32 H 1.08000 * 119.99630 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.46970 * 262.56449 * 4 3 2 34 34 H 1.09003 * 109.47050 * 22.56839 * 4 3 2 35 35 H 1.09002 * 109.46717 * 142.56889 * 4 3 2 36 36 H 1.08994 * 109.47025 * 291.23284 * 8 7 5 37 37 H 1.08997 * 109.47282 * 51.23589 * 8 7 5 38 38 H 1.09003 * 109.46704 * 171.23599 * 8 7 5 39 39 H 1.09000 * 112.93729 * 9.66693 * 9 7 5 40 40 H 1.09007 * 113.76114 * 204.96774 * 10 9 7 41 41 H 1.08998 * 113.76013 * 336.33041 * 10 9 7 42 42 H 1.09006 * 109.46873 * 210.64050 * 12 11 10 43 43 H 1.09001 * 109.47378 * 330.64353 * 12 11 10 44 44 H 1.07994 * 119.96555 * 359.97438 * 14 13 12 45 45 H 1.07999 * 120.03789 * 180.27123 * 15 14 13 46 46 H 0.97004 * 119.99695 * 179.97438 * 21 20 18 47 47 H 1.08004 * 120.03374 * 179.97438 * 26 16 15 48 48 H 1.07997 * 119.97005 * 180.02562 * 27 26 16 49 49 H 1.08998 * 113.75868 * 220.99402 * 28 11 10 50 50 H 1.09005 * 113.75976 * 89.62911 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6791 1.1518 -0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.4059 2.5326 0.6374 7 7 1.9047 3.4745 -0.7045 8 6 3.2541 3.4310 -1.2733 9 6 1.0643 4.6581 -0.9022 10 6 1.8354 5.9882 -0.8259 11 7 2.0247 5.8483 -2.2866 12 6 1.8224 7.1333 -2.9691 13 6 3.1373 7.8631 -3.0660 14 6 3.5223 8.7282 -2.0580 15 6 4.7293 9.3941 -2.1412 16 6 5.5518 9.2026 -3.2437 17 8 6.7363 9.8599 -3.3311 18 6 7.4281 9.7248 -4.4804 19 1 6.9977 9.1824 -5.3092 20 6 8.6922 10.2823 -4.5984 21 7 9.3674 10.1499 -5.7197 22 14 9.4369 11.2199 -3.1647 23 1 10.2022 10.2824 -2.3041 24 1 10.3477 12.2729 -3.6816 25 1 8.3531 11.8500 -2.3687 26 6 5.1597 8.3375 -4.2570 27 6 3.9542 7.6702 -4.1653 28 6 0.8154 5.0010 -2.3821 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.0470 -0.9353 -0.0004 33 1 4.0428 1.2845 1.0183 34 1 4.0422 0.2028 -0.3953 35 1 4.0421 1.9680 -0.6252 36 1 3.9887 3.4632 -0.4688 37 1 3.3789 2.5099 -1.8426 38 1 3.3986 4.2876 -1.9317 39 1 0.1577 4.6412 -0.2972 40 1 1.2160 6.8393 -0.5428 41 1 2.7620 5.9265 -0.2551 42 1 1.4311 6.9550 -3.9708 43 1 1.1125 7.7372 -2.4038 44 1 2.8803 8.8800 -1.2030 45 1 5.0315 10.0662 -1.3517 46 1 10.2516 10.5403 -5.8024 47 1 5.7970 8.1869 -5.1159 48 1 3.6489 6.9971 -4.9527 49 1 0.9270 4.1506 -3.0547 50 1 -0.1024 5.5634 -2.5542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277580737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:33 Heat of formation + Delta-G solvation = 50.374548 kcal Electronic energy + Delta-G solvation = -29619.976002 eV Core-core repulsion = 25616.051016 eV Total energy + Delta-G solvation = -4003.924986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.10072 -39.56415 -38.98183 -36.78478 -35.56987 -35.00658 -32.49011 -31.53783 -30.33945 -30.20896 -28.02384 -27.41013 -26.30054 -25.49855 -24.68232 -23.74831 -22.52177 -22.04519 -20.39681 -19.67481 -18.70751 -17.90580 -17.32323 -16.98260 -16.22565 -15.94318 -15.48419 -15.21573 -15.10212 -14.69566 -14.53345 -14.21484 -13.96474 -13.83907 -13.76591 -13.68103 -13.36537 -13.14310 -13.06376 -12.84564 -12.69177 -12.60181 -12.38661 -12.21626 -12.20398 -11.97823 -11.75681 -11.58095 -11.25659 -11.09639 -10.92479 -10.77295 -10.69629 -10.58456 -10.16171 -9.86275 -9.42829 -9.24250 -8.91054 -8.84127 -8.81400 -8.27359 -7.33823 -6.43905 -4.10274 1.19895 2.11426 2.15928 2.64574 2.88373 3.20028 3.23871 3.38364 3.75801 4.21548 4.22017 4.32995 4.44431 4.59906 4.72271 4.83920 4.91910 4.97251 5.02728 5.05321 5.07671 5.17138 5.19542 5.29112 5.32904 5.37634 5.38880 5.41442 5.48499 5.55498 5.61454 5.63450 5.64907 5.69292 5.77270 5.78327 5.95032 6.08917 6.15840 6.17434 6.23810 6.34928 6.40863 6.54900 6.77824 6.84751 7.03517 7.20312 7.23530 7.30823 7.59200 7.77634 7.93105 8.01658 8.91445 9.54138 10.63739 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.002104 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.813460 B =13307.814279 C =14082.397773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.182 4.182 4 C -0.157 4.157 5 C 0.560 3.440 6 O -0.541 6.541 7 N -0.587 5.587 8 C 0.057 3.943 9 C 0.114 3.886 10 C -0.002 4.002 11 N -0.468 5.468 12 C 0.076 3.924 13 C -0.166 4.166 14 C -0.068 4.068 15 C -0.193 4.193 16 C 0.160 3.840 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.221 4.221 27 C -0.055 4.055 28 C -0.011 4.011 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.279 0.721 47 H 0.132 0.868 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.329 -16.294 9.216 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 C -0.185 4.185 4 C -0.213 4.213 5 C 0.350 3.650 6 O -0.419 6.419 7 N -0.318 5.318 8 C -0.084 4.084 9 C 0.009 3.991 10 C -0.132 4.132 11 N -0.191 5.191 12 C -0.051 4.051 13 C -0.168 4.168 14 C -0.087 4.087 15 C -0.212 4.212 16 C 0.108 3.892 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.517 5.517 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.240 4.240 27 C -0.073 4.073 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.126 0.874 49 H 0.109 0.891 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.903 -16.240 9.296 24.557 hybrid contribution -0.058 0.704 0.516 0.875 sum -15.961 -15.536 9.812 24.340 Atomic orbital electron populations 1.21032 0.92286 1.01921 1.03790 1.23468 0.96800 0.96600 0.93590 1.21393 0.96806 0.92804 1.07532 1.21810 0.90682 1.05112 1.03712 1.18546 0.84472 0.83739 0.78249 1.90744 1.25462 1.83694 1.42007 1.47361 1.16065 1.15364 1.53043 1.22536 0.81566 1.04868 0.99478 1.22402 0.94859 0.85173 0.96707 1.24400 1.00988 0.96190 0.91631 1.68593 1.33168 1.12486 1.04822 1.21389 0.94764 0.89705 0.99259 1.19046 0.97678 1.02730 0.97300 1.20437 0.95146 0.95956 0.97173 1.20157 0.95615 1.06309 0.99143 1.19140 0.86302 0.90364 0.93398 1.83582 1.27998 1.61847 1.38875 1.20755 0.99181 1.37106 0.89363 0.87664 1.24475 0.94928 0.96980 0.97682 1.69650 1.13047 1.43837 1.25161 0.86179 0.79306 0.79670 0.81737 1.19905 1.20781 1.18387 1.21271 0.98889 1.02044 1.01801 1.20600 0.93254 0.97003 0.96478 1.24428 0.93952 0.98582 0.97160 0.92305 0.89305 0.91593 0.85860 0.91455 0.91521 0.87549 0.91834 0.91195 0.86839 0.87424 0.90147 0.88856 0.90785 0.93615 0.87482 0.86705 0.91052 0.85030 0.87408 0.89149 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.69 36.01 0.31 -0.82 16 2 C -0.09 -0.70 9.93 -36.12 -0.36 -1.06 16 3 C -0.18 -1.70 5.51 -102.84 -0.57 -2.26 16 4 C -0.16 -1.14 9.18 36.01 0.33 -0.81 16 5 C 0.56 6.43 6.96 -12.67 -0.09 6.34 16 6 O -0.54 -7.63 13.96 5.26 0.07 -7.55 16 7 N -0.59 -5.99 3.09 -178.07 -0.55 -6.54 16 8 C 0.06 0.51 7.75 59.85 0.46 0.98 16 9 C 0.11 1.11 4.54 -69.62 -0.32 0.80 16 10 C 0.00 -0.02 7.12 -2.77 -0.02 -0.04 16 11 N -0.47 -5.01 4.09 -239.87 -0.98 -5.99 16 12 C 0.08 0.89 4.92 -4.98 -0.02 0.86 16 13 C -0.17 -2.55 5.44 -104.57 -0.57 -3.12 16 14 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 15 C -0.19 -3.70 9.99 -39.39 -0.39 -4.10 16 16 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 17 O -0.22 -5.68 8.59 0.06 0.00 -5.68 16 18 C -0.39 -10.80 9.90 30.89 0.31 -10.50 16 19 H 0.11 2.99 5.52 -52.49 -0.29 2.70 16 20 C 0.06 1.74 5.49 -17.51 -0.10 1.64 16 21 N -0.88 -25.13 13.96 55.48 0.77 -24.36 16 22 Si 0.91 21.47 28.62 -169.99 -4.86 16.61 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.22 -4.62 9.13 -39.40 -0.36 -4.98 16 27 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 28 C -0.01 -0.10 7.49 -2.76 -0.02 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.92 6.74 -51.93 -0.35 0.57 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.12 0.73 8.00 -52.49 -0.42 0.31 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.39 7.98 -51.93 -0.41 -0.02 16 35 H 0.11 0.73 2.80 -53.68 -0.15 0.58 16 36 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 37 H 0.07 0.54 6.30 -51.93 -0.33 0.21 16 38 H 0.11 1.19 5.55 -51.93 -0.29 0.90 16 39 H 0.11 1.12 7.21 -51.93 -0.37 0.75 16 40 H 0.08 0.71 7.48 -51.92 -0.39 0.32 16 41 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 42 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 43 H 0.05 0.48 7.32 -51.93 -0.38 0.10 16 44 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 46 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.13 2.92 5.71 -52.48 -0.30 2.62 16 48 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.61 7.92 -51.93 -0.41 0.19 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -30.67 397.87 -9.34 -40.01 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.36 Total: 4.15 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -2.43 Total: -16.65 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.76 Total: -36.88 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.86 Total: 16.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.67 -9.34 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277580737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.381 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds