Wall clock time and date at job start Wed Apr 1 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32999 * 119.99709 * 2 1 4 4 C 1.50706 * 119.99452 * 180.02562 * 3 2 1 5 5 C 1.47097 * 120.00340 * 0.02562 * 3 2 1 6 6 O 1.21621 * 119.99695 * 37.17441 * 5 3 2 7 7 N 1.34770 * 120.00419 * 217.16940 * 5 3 2 8 8 C 1.46502 * 119.99676 * 349.08978 * 7 5 3 9 9 C 1.46498 * 120.00122 * 169.08866 * 7 5 3 10 10 C 1.53933 * 113.82889 * 141.32886 * 9 7 5 11 11 N 1.47959 * 86.18478 * 90.64740 * 10 9 7 12 12 C 1.46901 * 110.99920 * 137.57979 * 11 10 9 13 13 C 1.50694 * 109.47148 * 90.64551 * 12 11 10 14 14 C 1.38304 * 119.92967 * 269.72677 * 13 12 11 15 15 C 1.38100 * 120.06793 * 179.72460 * 14 13 12 16 16 C 1.38879 * 119.92992 * 0.52097 * 15 14 13 17 17 O 1.35752 * 120.06944 * 179.72842 * 16 15 14 18 18 C 1.34825 * 117.00151 * 185.92733 * 17 16 15 19 19 H 1.07998 * 120.00382 * 5.04697 * 18 17 16 20 20 C 1.38659 * 120.00106 * 185.04304 * 18 17 16 21 21 N 1.31561 * 119.99808 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99884 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47190 * 89.99878 * 22 20 18 24 24 H 1.48506 * 109.46939 * 209.99601 * 22 20 18 25 25 H 1.48498 * 109.47471 * 329.99638 * 22 20 18 26 26 C 1.38876 * 119.86292 * 359.75240 * 16 15 14 27 27 C 1.38096 * 119.93358 * 359.97438 * 26 16 15 28 28 C 1.47964 * 90.76036 * 24.68959 * 11 10 9 29 29 H 1.08991 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46814 * 299.99424 * 1 2 3 31 31 H 1.08991 * 109.47196 * 59.99520 * 1 2 3 32 32 H 1.08000 * 119.99630 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.46970 * 262.56449 * 4 3 2 34 34 H 1.09003 * 109.47050 * 22.56839 * 4 3 2 35 35 H 1.09002 * 109.46717 * 142.56889 * 4 3 2 36 36 H 1.08994 * 109.47025 * 291.23284 * 8 7 5 37 37 H 1.08997 * 109.47282 * 51.23589 * 8 7 5 38 38 H 1.09003 * 109.46704 * 171.23599 * 8 7 5 39 39 H 1.09000 * 112.93729 * 9.66693 * 9 7 5 40 40 H 1.09007 * 113.76114 * 204.96774 * 10 9 7 41 41 H 1.08998 * 113.76013 * 336.33041 * 10 9 7 42 42 H 1.09006 * 109.46873 * 210.64050 * 12 11 10 43 43 H 1.09001 * 109.47378 * 330.64353 * 12 11 10 44 44 H 1.07994 * 119.96555 * 359.97438 * 14 13 12 45 45 H 1.07999 * 120.03789 * 180.27123 * 15 14 13 46 46 H 0.97004 * 119.99695 * 179.97438 * 21 20 18 47 47 H 1.08004 * 120.03374 * 179.97438 * 26 16 15 48 48 H 1.07997 * 119.97005 * 180.02562 * 27 26 16 49 49 H 1.08998 * 113.75868 * 220.99402 * 28 11 10 50 50 H 1.09005 * 113.75976 * 89.62911 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6791 1.1518 -0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.4059 2.5326 0.6374 7 7 1.9047 3.4745 -0.7045 8 6 3.2541 3.4310 -1.2733 9 6 1.0643 4.6581 -0.9022 10 6 1.8354 5.9882 -0.8259 11 7 2.0247 5.8483 -2.2866 12 6 1.8224 7.1333 -2.9691 13 6 3.1373 7.8631 -3.0660 14 6 3.5223 8.7282 -2.0580 15 6 4.7293 9.3941 -2.1412 16 6 5.5518 9.2026 -3.2437 17 8 6.7363 9.8599 -3.3311 18 6 7.4281 9.7248 -4.4804 19 1 6.9977 9.1824 -5.3092 20 6 8.6922 10.2823 -4.5984 21 7 9.3674 10.1499 -5.7197 22 14 9.4369 11.2199 -3.1647 23 1 10.2022 10.2824 -2.3041 24 1 10.3477 12.2729 -3.6816 25 1 8.3531 11.8500 -2.3687 26 6 5.1597 8.3375 -4.2570 27 6 3.9542 7.6702 -4.1653 28 6 0.8154 5.0010 -2.3821 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.0470 -0.9353 -0.0004 33 1 4.0428 1.2845 1.0183 34 1 4.0422 0.2028 -0.3953 35 1 4.0421 1.9680 -0.6252 36 1 3.9887 3.4632 -0.4688 37 1 3.3789 2.5099 -1.8426 38 1 3.3986 4.2876 -1.9317 39 1 0.1577 4.6412 -0.2972 40 1 1.2160 6.8393 -0.5428 41 1 2.7620 5.9265 -0.2551 42 1 1.4311 6.9550 -3.9708 43 1 1.1125 7.7372 -2.4038 44 1 2.8803 8.8800 -1.2030 45 1 5.0315 10.0662 -1.3517 46 1 10.2516 10.5403 -5.8024 47 1 5.7970 8.1869 -5.1159 48 1 3.6489 6.9971 -4.9527 49 1 0.9270 4.1506 -3.0547 50 1 -0.1024 5.5634 -2.5542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277580737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:31 Heat of formation + Delta-G solvation = 32.577983 kcal Electronic energy + Delta-G solvation = -29620.747719 eV Core-core repulsion = 25616.051016 eV Total energy + Delta-G solvation = -4004.696703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.91776 -40.87304 -40.16918 -38.34002 -36.37159 -35.78672 -34.46988 -32.71529 -31.77345 -31.04797 -29.10328 -28.28421 -27.23736 -27.03547 -25.54656 -24.69919 -23.66548 -23.32262 -21.80132 -20.42734 -19.78065 -19.48456 -19.06564 -17.84899 -17.01267 -16.85291 -16.72633 -16.37629 -16.14906 -15.90321 -15.63271 -15.45443 -15.43417 -15.13085 -14.90417 -14.51216 -14.37355 -14.21678 -14.10169 -14.04896 -13.88093 -13.74278 -13.50110 -13.32031 -13.12890 -12.89672 -12.71923 -12.61531 -12.56984 -12.35220 -12.29774 -11.99867 -11.85817 -11.74653 -11.54959 -11.26276 -10.88282 -10.68722 -9.93320 -9.76670 -9.66398 -9.59126 -8.94739 -8.49096 -6.20993 0.49600 0.61126 0.66685 1.31617 1.35566 1.51992 1.87710 2.10954 2.28449 2.71758 2.95606 3.14231 3.21039 3.49577 3.61599 3.89289 3.97926 3.98237 4.05398 4.18746 4.28979 4.32620 4.37898 4.45668 4.48870 4.58005 4.61953 4.63345 4.64795 4.73559 4.74165 4.78362 4.81117 4.83769 4.86704 4.91410 5.01315 5.04053 5.11144 5.24668 5.28983 5.37368 5.41277 5.51819 5.57582 5.63012 5.67687 5.79263 5.85755 5.93365 6.05634 6.28696 6.41687 6.85573 7.10679 7.61220 8.62595 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.002104 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.813460 B =13307.814279 C =14082.397773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.153 4.153 5 C 0.552 3.448 6 O -0.576 6.576 7 N -0.587 5.587 8 C 0.060 3.940 9 C 0.109 3.891 10 C 0.001 3.999 11 N -0.480 5.480 12 C 0.078 3.922 13 C -0.137 4.137 14 C -0.060 4.060 15 C -0.193 4.193 16 C 0.117 3.883 17 O -0.248 6.248 18 C -0.396 4.396 19 H 0.080 0.920 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.236 4.236 27 C -0.057 4.057 28 C 0.001 3.999 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.151 0.849 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.148 0.852 45 H 0.124 0.876 46 H 0.284 0.716 47 H 0.104 0.896 48 H 0.130 0.870 49 H 0.089 0.911 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.466 -17.442 10.868 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.209 4.209 5 C 0.344 3.656 6 O -0.457 6.457 7 N -0.317 5.317 8 C -0.081 4.081 9 C 0.004 3.996 10 C -0.129 4.129 11 N -0.203 5.203 12 C -0.050 4.050 13 C -0.138 4.138 14 C -0.079 4.079 15 C -0.212 4.212 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.472 4.472 19 H 0.097 0.903 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.256 4.256 27 C -0.075 4.075 28 C -0.128 4.128 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.166 0.834 45 H 0.142 0.858 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.148 0.852 49 H 0.107 0.893 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.069 -17.402 10.945 27.370 hybrid contribution 0.225 0.853 0.058 0.884 sum -17.844 -16.550 11.002 26.708 Atomic orbital electron populations 1.20996 0.92823 1.02832 1.02247 1.23774 0.96631 0.97426 0.91948 1.21541 0.97830 0.92117 1.08859 1.21789 0.89211 1.06111 1.03739 1.18980 0.84208 0.84639 0.77803 1.90725 1.27052 1.84352 1.43582 1.47460 1.16442 1.15272 1.52527 1.22573 0.81064 1.04949 0.99518 1.22429 0.94649 0.85166 0.97344 1.24440 1.00776 0.96746 0.90912 1.68546 1.34499 1.11993 1.05258 1.21433 0.92539 0.90191 1.00800 1.19557 0.98265 1.00662 0.95296 1.20891 0.94113 0.94508 0.98352 1.20477 0.96116 1.06481 0.98109 1.19688 0.86186 0.91823 0.95446 1.83519 1.29752 1.64291 1.37976 1.20671 0.99713 1.36984 0.89846 0.90286 1.25284 0.95316 0.98104 1.00314 1.69736 1.13819 1.45894 1.27003 0.85215 0.78376 0.78634 0.78474 1.19147 1.19255 1.18746 1.21261 1.00298 1.03084 1.00919 1.20863 0.92003 0.96667 0.98012 1.24415 0.93932 0.98221 0.96254 0.90116 0.91462 0.92564 0.83119 0.91651 0.89857 0.87435 0.91246 0.89916 0.88030 0.88174 0.88349 0.89864 0.89571 0.91202 0.83418 0.85767 0.90634 0.87775 0.85197 0.89291 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.69 71.24 0.62 -1.48 16 2 C -0.08 -1.13 9.93 24.52 0.24 -0.89 16 3 C -0.20 -3.41 5.51 -18.70 -0.10 -3.52 16 4 C -0.15 -1.89 9.18 71.24 0.65 -1.24 16 5 C 0.55 12.15 6.96 86.57 0.60 12.75 16 6 O -0.58 -16.14 13.96 -4.10 -0.06 -16.20 16 7 N -0.59 -11.03 3.09 -835.54 -2.58 -13.61 16 8 C 0.06 0.97 7.75 127.77 0.99 1.96 16 9 C 0.11 1.89 4.54 46.55 0.21 2.10 16 10 C 0.00 0.01 7.12 86.41 0.62 0.63 16 11 N -0.48 -8.49 4.09 -912.81 -3.73 -12.22 16 12 C 0.08 1.45 4.92 85.56 0.42 1.87 16 13 C -0.14 -3.72 5.44 -19.83 -0.11 -3.83 16 14 C -0.06 -1.71 9.69 22.25 0.22 -1.50 16 15 C -0.19 -7.14 9.99 22.39 0.22 -6.91 16 16 C 0.12 5.42 6.65 22.58 0.15 5.57 16 17 O -0.25 -13.44 8.59 -22.71 -0.19 -13.63 16 18 C -0.40 -23.32 9.90 67.92 0.67 -22.64 16 19 H 0.08 4.89 5.52 -2.91 -0.02 4.87 16 20 C 0.01 0.46 5.49 84.83 0.47 0.93 16 21 N -0.92 -55.17 13.96 21.62 0.30 -54.87 16 22 Si 0.97 45.46 28.62 68.60 1.96 47.42 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 26 C -0.24 -10.21 9.13 22.39 0.20 -10.00 16 27 C -0.06 -1.88 9.69 22.25 0.22 -1.67 16 28 C 0.00 0.02 7.49 86.41 0.65 0.67 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.38 6.74 -2.39 -0.02 1.37 16 31 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 32 H 0.15 1.30 8.00 -2.91 -0.02 1.27 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.75 7.98 -2.39 -0.02 0.73 16 35 H 0.11 1.27 2.80 -4.03 -0.01 1.26 16 36 H 0.07 1.03 6.71 -2.39 -0.02 1.02 16 37 H 0.08 1.11 6.30 -2.39 -0.02 1.10 16 38 H 0.10 1.91 5.55 -2.39 -0.01 1.90 16 39 H 0.10 1.92 7.21 -2.39 -0.02 1.90 16 40 H 0.10 1.28 7.48 -2.38 -0.02 1.26 16 41 H 0.08 1.56 7.89 -2.39 -0.02 1.55 16 42 H 0.09 1.49 8.02 -2.38 -0.02 1.47 16 43 H 0.07 1.05 7.32 -2.39 -0.02 1.03 16 44 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 45 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 46 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.10 5.02 5.71 -2.91 -0.02 5.00 16 48 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 1.09 7.92 -2.38 -0.02 1.07 16 Total: -1.00 -71.22 397.87 3.58 -67.63 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.95 Total: 22.68 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 6.94 Total: -27.21 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -6.01 Total: -80.70 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.25 Total: -29.83 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.96 Total: 47.42 kcal Total: -71.22 3.58 -67.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277580737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.213 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds