Wall clock time and date at job start Wed Apr 1 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99898 * 2 1 4 4 C 1.53003 * 109.47086 * 121.43367 * 3 2 1 5 5 H 1.09002 * 109.46990 * 307.38976 * 4 3 2 6 6 C 1.50697 * 109.47064 * 67.39339 * 4 3 2 7 7 O 1.21283 * 119.99954 * 32.68352 * 6 4 3 8 8 N 1.34776 * 119.99844 * 212.68422 * 6 4 3 9 9 C 1.46499 * 119.99552 * 185.38026 * 8 6 4 10 10 C 1.53005 * 109.46844 * 179.97438 * 9 8 6 11 11 H 1.08989 * 109.55703 * 304.88099 * 10 9 8 12 12 C 1.52882 * 109.58440 * 184.87964 * 10 9 8 13 13 N 1.47153 * 108.60756 * 187.92603 * 12 10 9 14 14 C 1.36939 * 120.97988 * 230.50236 * 13 12 10 15 15 H 1.08001 * 120.00132 * 27.34346 * 14 13 12 16 16 C 1.38806 * 119.99779 * 207.34468 * 14 13 12 17 17 N 1.31616 * 120.00189 * 16.54111 * 16 14 13 18 18 Si 1.86802 * 119.99880 * 196.26889 * 16 14 13 19 19 H 1.48496 * 109.47525 * 89.99781 * 18 16 14 20 20 H 1.48500 * 109.47105 * 210.00171 * 18 16 14 21 21 H 1.48501 * 109.47095 * 329.99328 * 18 16 14 22 22 C 1.47147 * 118.03240 * 50.23355 * 13 12 10 23 23 C 1.53298 * 108.38650 * 309.71150 * 22 13 12 24 24 O 1.42961 * 109.22108 * 52.30421 * 23 22 13 25 25 C 1.50703 * 109.47134 * 187.39413 * 4 3 2 26 26 C 1.38236 * 119.99728 * 299.72798 * 25 4 3 27 27 C 1.38240 * 119.99465 * 179.78662 * 26 25 4 28 28 C 1.38232 * 119.99940 * 0.46363 * 27 26 25 29 29 C 1.38237 * 120.00297 * 359.76774 * 28 27 26 30 30 C 1.38229 * 119.99876 * 0.02562 * 29 28 27 31 31 H 1.08000 * 119.99981 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.99714 * 359.97438 * 1 2 3 33 33 H 1.07998 * 120.00223 * 180.02562 * 2 1 3 34 34 H 1.09004 * 109.47154 * 1.43605 * 3 2 1 35 35 H 1.08993 * 109.47432 * 241.43574 * 3 2 1 36 36 H 0.97000 * 120.00042 * 5.38522 * 8 6 4 37 37 H 1.09003 * 109.47088 * 60.00468 * 9 8 6 38 38 H 1.08991 * 109.47663 * 299.99808 * 9 8 6 39 39 H 1.09007 * 109.61444 * 68.10880 * 12 10 9 40 40 H 1.08996 * 109.52360 * 307.69852 * 12 10 9 41 41 H 0.97004 * 119.99969 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.68387 * 69.44018 * 22 13 12 43 43 H 1.09004 * 109.67487 * 189.95412 * 22 13 12 44 44 H 1.08998 * 109.51396 * 172.23140 * 23 22 13 45 45 H 1.08999 * 109.50726 * 292.38081 * 23 22 13 46 46 H 1.08000 * 120.00035 * 0.02562 * 26 25 4 47 47 H 1.08005 * 119.99645 * 180.24918 * 27 26 25 48 48 H 1.08001 * 119.99670 * 179.78509 * 28 27 26 49 49 H 1.08004 * 120.00125 * 179.97438 * 29 28 27 50 50 H 1.08000 * 120.00128 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9700 1.3706 1.2308 5 1 2.3817 1.1708 2.1264 6 6 4.0616 0.3392 1.1062 7 8 4.5008 0.0501 0.0133 8 7 4.5498 -0.2620 2.2093 9 6 5.6895 -1.1761 2.1016 10 6 6.0421 -1.7172 3.4887 11 1 6.2181 -0.8856 4.1707 12 6 7.3043 -2.5750 3.3984 13 7 7.5160 -3.2367 4.6956 14 6 8.7300 -3.1789 5.3266 15 1 9.3890 -2.3409 5.1539 16 6 9.1135 -4.1974 6.1882 17 7 8.4877 -5.3548 6.1589 18 14 10.5229 -3.9278 7.3843 19 1 9.9922 -3.3851 8.6606 20 1 11.2072 -5.2202 7.6423 21 1 11.4899 -2.9637 6.8005 22 6 6.3829 -3.9573 5.2975 23 6 5.1640 -3.0277 5.2977 24 8 4.9621 -2.5159 3.9782 25 6 3.5846 2.7431 1.3296 26 6 4.3838 3.2178 0.3063 27 6 4.9439 4.4785 0.3950 28 6 4.7127 5.2606 1.5110 29 6 3.9175 4.7840 2.5364 30 6 3.3539 3.5251 2.4459 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5399 0.9353 0.0004 33 1 1.8501 -0.9353 -0.0004 34 1 1.3555 2.1335 0.0258 35 1 2.6707 1.3741 -0.9025 36 1 4.1464 -0.0894 3.0744 37 1 6.5465 -0.6416 1.6919 38 1 5.4296 -2.0050 1.4432 39 1 8.1608 -1.9424 3.1649 40 1 7.1791 -3.3265 2.6190 41 1 8.7554 -6.0664 6.7613 42 1 6.1634 -4.8505 4.7125 43 1 6.6298 -4.2402 6.3208 44 1 4.2812 -3.5849 5.6112 45 1 5.3370 -2.2008 5.9865 46 1 4.5673 2.6052 -0.5640 47 1 5.5650 4.8509 -0.4063 48 1 5.1532 6.2442 1.5818 49 1 3.7372 5.3950 3.4086 50 1 2.7329 3.1526 3.2471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319330548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:57 Heat of formation + Delta-G solvation = -20.137560 kcal Electronic energy + Delta-G solvation = -29987.956501 eV Core-core repulsion = 25980.973881 eV Total energy + Delta-G solvation = -4006.982621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.51256 -39.02808 -38.40291 -35.77423 -34.84612 -34.28735 -32.83749 -31.55617 -31.12498 -30.67978 -28.95737 -27.56944 -25.85357 -24.38003 -23.20966 -22.83530 -22.26890 -21.50459 -20.46037 -19.92044 -19.35751 -17.40704 -17.02689 -16.91309 -16.17764 -15.94240 -15.50635 -15.39584 -15.05284 -14.84492 -14.70065 -14.39947 -14.22683 -13.80865 -13.60876 -13.54603 -13.32105 -13.15969 -12.95153 -12.89991 -12.73705 -12.29008 -12.26205 -11.74471 -11.57866 -11.51781 -11.26378 -11.14817 -10.96844 -10.88272 -10.75748 -10.43121 -10.28384 -10.03303 -9.93212 -9.67717 -9.57496 -9.14151 -9.10069 -8.96386 -8.88675 -8.57662 -6.77579 -5.87425 -3.32375 1.05391 1.18052 2.10063 2.64803 3.19465 3.32251 3.39297 3.40655 3.58179 4.20647 4.35854 4.40341 4.53564 4.67684 4.77048 4.87474 4.88997 4.98555 5.01785 5.12199 5.17892 5.29583 5.30247 5.35325 5.46939 5.48575 5.52508 5.71971 5.78629 5.79130 5.81422 5.83620 5.84517 6.01257 6.12513 6.22279 6.26136 6.29714 6.33895 6.34351 6.45539 6.46402 6.52864 6.59592 6.73048 6.75614 7.06215 7.47383 7.55725 7.68336 7.82118 8.24483 8.30813 9.08297 9.70651 10.28135 11.20831 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.002491 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.460848 B =11238.978885 C =12548.238899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.074 4.074 4 C -0.061 4.061 5 H 0.097 0.903 6 C 0.522 3.478 7 O -0.540 6.540 8 N -0.717 5.717 9 C 0.131 3.869 10 C 0.066 3.934 11 H 0.058 0.942 12 C 0.122 3.878 13 N -0.594 5.594 14 C -0.257 4.257 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.140 3.860 23 C 0.039 3.961 24 O -0.389 6.389 25 C -0.078 4.078 26 C -0.104 4.104 27 C -0.119 4.119 28 C -0.120 4.120 29 C -0.121 4.121 30 C -0.110 4.110 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.403 0.597 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 18.295 -8.470 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.168 4.168 3 C -0.111 4.111 4 C -0.083 4.083 5 H 0.115 0.885 6 C 0.308 3.692 7 O -0.417 6.417 8 N -0.367 5.367 9 C 0.007 3.993 10 C 0.006 3.994 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.317 5.317 14 C -0.386 4.386 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.015 3.985 23 C -0.038 4.038 24 O -0.309 6.309 25 C -0.078 4.078 26 C -0.122 4.122 27 C -0.137 4.137 28 C -0.138 4.138 29 C -0.139 4.139 30 C -0.128 4.128 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.237 0.763 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.059 0.941 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.188 17.873 -9.256 24.626 hybrid contribution 0.821 0.018 1.385 1.610 sum -13.367 17.891 -7.871 23.680 Atomic orbital electron populations 1.23838 0.95786 1.01767 1.01765 1.22986 0.95979 0.98615 0.99218 1.20674 0.97527 0.95711 0.97221 1.20266 0.95224 0.91297 1.01470 0.88495 1.20305 0.83105 0.81464 0.84354 1.90681 1.60602 1.64055 1.26383 1.45975 1.34296 1.46235 1.10243 1.21412 0.88381 0.92704 0.96833 1.22715 0.89802 0.93665 0.93246 0.92444 1.21362 0.94275 0.95047 0.89875 1.44035 1.08815 1.61536 1.17353 1.19192 0.94636 1.02705 1.22093 0.91389 1.25075 0.98443 0.94459 1.01538 1.70036 1.43458 1.02395 1.38678 0.86241 0.81795 0.77103 0.81326 1.21352 1.21630 1.20340 1.21416 0.84588 0.91852 1.00673 1.23322 1.00148 0.97535 0.82826 1.87791 1.41255 1.69061 1.32751 1.19425 0.98803 0.94357 0.95233 1.21178 0.96270 0.95856 0.98865 1.21172 0.99866 0.94423 0.98269 1.21197 0.98579 0.99893 0.94109 1.21127 0.97862 0.95970 0.98912 1.21071 1.00061 0.94483 0.97184 0.88468 0.88663 0.87195 0.90622 0.89339 0.76321 0.90290 0.90600 0.91814 0.95260 0.93469 0.95307 0.89016 0.90036 0.94120 0.85320 0.85962 0.86119 0.85936 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 14.32 29.01 0.42 -1.25 16 2 C -0.15 -1.51 9.09 -36.03 -0.33 -1.84 16 3 C -0.07 -0.71 4.61 -27.88 -0.13 -0.84 16 4 C -0.06 -0.61 2.34 -92.92 -0.22 -0.83 16 5 H 0.10 0.82 7.84 -51.93 -0.41 0.41 16 6 C 0.52 6.84 5.88 -10.99 -0.06 6.78 16 7 O -0.54 -8.72 15.67 5.56 0.09 -8.63 16 8 N -0.72 -9.37 5.50 -60.29 -0.33 -9.70 16 9 C 0.13 1.97 5.35 -4.04 -0.02 1.95 16 10 C 0.07 1.13 2.80 -26.79 -0.07 1.06 16 11 H 0.06 0.99 8.14 -51.94 -0.42 0.57 16 12 C 0.12 2.53 6.00 -3.75 -0.02 2.51 16 13 N -0.59 -14.77 3.05 -172.08 -0.52 -15.30 16 14 C -0.26 -6.95 9.64 -15.06 -0.15 -7.09 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 17 N -0.90 -25.83 11.22 55.49 0.62 -25.21 16 18 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 C 0.14 3.31 5.43 -3.53 -0.02 3.29 16 23 C 0.04 0.75 6.99 37.31 0.26 1.01 16 24 O -0.39 -7.19 10.33 -35.23 -0.36 -7.55 16 25 C -0.08 -0.77 4.76 -104.62 -0.50 -1.27 16 26 C -0.10 -1.08 8.88 -39.58 -0.35 -1.44 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 30 C -0.11 -0.97 9.67 -39.58 -0.38 -1.35 16 31 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.10 0.69 7.83 -52.49 -0.41 0.28 16 33 H 0.11 1.29 7.90 -52.49 -0.41 0.87 16 34 H 0.08 0.62 7.77 -51.93 -0.40 0.21 16 35 H 0.09 0.95 7.12 -51.93 -0.37 0.58 16 36 H 0.40 4.64 8.46 -40.82 -0.35 4.29 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.26 7.96 -51.92 -0.41 0.85 16 40 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 2.37 6.24 -51.93 -0.32 2.04 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.13 1.42 7.29 -52.49 -0.38 1.04 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 50 H 0.12 0.86 7.95 -52.49 -0.42 0.44 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -31.49 409.28 -10.32 -41.81 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.09 Total: 5.73 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.86 Total: -3.60 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.23 Total: -50.21 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.28 Total: -16.18 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.49 -10.32 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319330548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.669 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds