Wall clock time and date at job start Wed Apr 1 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99881 * 2 1 4 4 C 1.52999 * 109.46977 * 124.99883 * 3 2 1 5 5 H 1.09000 * 109.47164 * 305.00017 * 4 3 2 6 6 C 1.50702 * 109.47135 * 184.99896 * 4 3 2 7 7 O 1.21276 * 119.99967 * 239.99704 * 6 4 3 8 8 N 1.34781 * 119.99740 * 59.72654 * 6 4 3 9 9 C 1.46502 * 119.99761 * 180.27912 * 8 6 4 10 10 C 1.52993 * 109.46924 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.51348 * 59.90059 * 10 9 8 12 12 C 1.53297 * 109.51219 * 179.97438 * 10 9 8 13 13 N 1.47148 * 108.38955 * 172.22759 * 12 10 9 14 14 C 1.36928 * 120.98660 * 129.48554 * 13 12 10 15 15 H 1.08002 * 120.00069 * 206.22339 * 14 13 12 16 16 C 1.38816 * 120.00117 * 26.22638 * 14 13 12 17 17 N 1.31620 * 119.99716 * 16.91461 * 16 14 13 18 18 Si 1.86797 * 120.00200 * 196.92133 * 16 14 13 19 19 H 1.48507 * 109.47068 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47409 * 119.99263 * 18 16 14 21 21 H 1.48498 * 109.46807 * 239.99736 * 18 16 14 22 22 C 1.47162 * 118.03009 * 309.46789 * 13 12 10 23 23 C 1.53286 * 108.38630 * 50.53353 * 22 13 12 24 24 O 1.42963 * 109.51322 * 299.74286 * 10 9 8 25 25 C 1.50700 * 109.47285 * 64.99612 * 4 3 2 26 26 C 1.38239 * 119.99929 * 59.73112 * 25 4 3 27 27 C 1.38230 * 120.00249 * 179.80848 * 26 25 4 28 28 C 1.38241 * 119.99668 * 0.42123 * 27 26 25 29 29 C 1.38234 * 120.00184 * 359.80573 * 28 27 26 30 30 C 1.38231 * 119.99934 * 0.02562 * 29 28 27 31 31 H 1.07996 * 120.00005 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.99863 * 0.02562 * 1 2 3 33 33 H 1.08002 * 119.99668 * 180.02562 * 2 1 3 34 34 H 1.08996 * 109.46921 * 4.99570 * 3 2 1 35 35 H 1.09001 * 109.46843 * 244.99333 * 3 2 1 36 36 H 0.96998 * 120.00080 * 0.27314 * 8 6 4 37 37 H 1.09011 * 109.46806 * 299.99436 * 9 8 6 38 38 H 1.09001 * 109.47288 * 59.99329 * 9 8 6 39 39 H 1.09003 * 109.68195 * 291.94951 * 12 10 9 40 40 H 1.09002 * 109.68274 * 52.46188 * 12 10 9 41 41 H 0.97003 * 119.99675 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.67959 * 170.25556 * 22 13 12 43 43 H 1.09004 * 109.67935 * 290.76860 * 22 13 12 44 44 H 1.08999 * 109.51545 * 67.62050 * 23 22 13 45 45 H 1.09001 * 109.51378 * 187.77266 * 23 22 13 46 46 H 1.08007 * 119.99422 * 359.97438 * 26 25 4 47 47 H 1.07997 * 120.00208 * 180.20573 * 27 26 25 48 48 H 1.08001 * 119.99941 * 179.79118 * 28 27 26 49 49 H 1.07996 * 120.00110 * 179.97438 * 29 28 27 50 50 H 1.08000 * 120.00048 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4882 1.1469 2.1060 6 6 3.6990 2.6840 1.2542 7 8 4.9051 2.7724 1.1633 8 7 2.9520 3.7943 1.4145 9 6 3.5970 5.1081 1.4789 10 6 2.5317 6.1907 1.6623 11 1 1.9827 6.0086 2.5862 12 6 3.2056 7.5659 1.7304 13 7 2.1569 8.5980 1.7177 14 6 2.1400 9.5975 2.6535 15 1 1.2078 10.0754 2.9164 16 6 3.3209 9.9964 3.2644 17 7 4.4798 9.6721 2.7312 18 14 3.2655 10.9934 4.8431 19 1 1.8513 11.2249 5.2329 20 1 3.9615 10.2492 5.9233 21 1 3.9393 12.2990 4.6278 22 6 1.1269 8.5245 0.6691 23 6 0.5542 7.1027 0.6528 24 8 1.6276 6.1635 0.5551 25 6 4.0838 0.2671 0.9951 26 6 4.9035 0.2913 -0.1178 27 6 5.8682 -0.6841 -0.2870 28 6 6.0074 -1.6888 0.6523 29 6 5.1846 -1.7157 1.7628 30 6 4.2222 -0.7383 1.9337 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 1.3585 2.1316 0.0895 35 1 2.6214 1.4025 -0.9313 36 1 1.9873 3.7235 1.4873 37 1 4.2888 5.1323 2.3210 38 1 4.1440 5.2900 0.5538 39 1 3.7870 7.6447 2.6490 40 1 3.8607 7.6968 0.8691 41 1 5.3050 9.9505 3.1583 42 1 0.3317 9.2381 0.8850 43 1 1.5720 8.7528 -0.2993 44 1 -0.0030 6.9240 1.5724 45 1 -0.1095 6.9874 -0.2041 46 1 4.7920 1.0740 -0.8537 47 1 6.5108 -0.6633 -1.1547 48 1 6.7589 -2.4529 0.5184 49 1 5.2931 -2.5008 2.4963 50 1 3.5791 -0.7595 2.8011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319330551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:13 Heat of formation + Delta-G solvation = -16.924307 kcal Electronic energy + Delta-G solvation = -30068.365192 eV Core-core repulsion = 26061.521908 eV Total energy + Delta-G solvation = -4006.843284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.43786 -38.92709 -38.28957 -35.90238 -34.82379 -34.32099 -32.52263 -31.39382 -30.98336 -30.94516 -28.96297 -27.35810 -25.72571 -24.56222 -23.32220 -22.71325 -22.18111 -21.42389 -20.29203 -19.81443 -19.43996 -17.27630 -16.96950 -16.86397 -16.12284 -15.88834 -15.80784 -15.22113 -14.94655 -14.73483 -14.48097 -14.36714 -14.13842 -13.86975 -13.76027 -13.42385 -13.28222 -13.15604 -12.94950 -12.85188 -12.66297 -12.43231 -11.94697 -11.88231 -11.54629 -11.37357 -11.14693 -11.08947 -11.01044 -10.88316 -10.74800 -10.44696 -10.27813 -10.06577 -9.78050 -9.68138 -9.55113 -9.11897 -8.96086 -8.84774 -8.77899 -8.58629 -6.79597 -5.87945 -3.31767 1.24659 1.35547 2.02379 2.75032 3.26389 3.32342 3.39762 3.41634 3.78207 4.21846 4.33032 4.40911 4.59142 4.75955 4.85170 4.89545 4.97290 5.05820 5.08543 5.14388 5.17240 5.32512 5.37672 5.45822 5.51631 5.53422 5.59825 5.70687 5.73139 5.82490 5.88756 5.90310 5.96843 6.00409 6.08700 6.21598 6.33962 6.36147 6.39635 6.43756 6.46942 6.49743 6.54857 6.65083 6.74522 6.91416 7.03085 7.44360 7.64913 7.67931 7.80051 8.29273 8.35035 9.07210 9.70205 10.27066 11.20111 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002425 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.897325 B =11542.193409 C =12660.067153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C -0.083 4.083 4 C -0.064 4.064 5 H 0.104 0.896 6 C 0.513 3.487 7 O -0.533 6.533 8 N -0.718 5.718 9 C 0.133 3.867 10 C 0.055 3.945 11 H 0.055 0.945 12 C 0.153 3.847 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.109 3.891 23 C 0.051 3.949 24 O -0.390 6.390 25 C -0.060 4.060 26 C -0.083 4.083 27 C -0.122 4.122 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.113 4.113 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -22.478 -4.597 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.166 4.166 3 C -0.121 4.121 4 C -0.085 4.085 5 H 0.122 0.878 6 C 0.298 3.702 7 O -0.409 6.409 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.004 4.004 11 H 0.073 0.927 12 C 0.026 3.974 13 N -0.318 5.318 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.216 1.216 22 C -0.018 4.018 23 C -0.028 4.028 24 O -0.309 6.309 25 C -0.060 4.060 26 C -0.101 4.101 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.143 4.143 30 C -0.131 4.131 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.324 -22.425 -4.747 23.326 hybrid contribution -0.406 0.797 1.087 1.408 sum -4.731 -21.628 -3.659 22.439 Atomic orbital electron populations 1.23883 0.95851 1.01967 1.01257 1.22870 0.95819 0.98201 0.99714 1.20783 0.97328 0.96440 0.97511 1.20321 0.95512 0.91497 1.01206 0.87807 1.20362 0.87579 0.85557 0.76679 1.90733 1.14112 1.86877 1.49171 1.45976 1.10789 1.06345 1.73841 1.21418 0.94857 0.79744 1.03075 1.23142 0.90861 0.97555 0.88851 0.92661 1.21304 0.90300 0.83011 1.02793 1.44057 1.29000 1.28205 1.30569 1.19221 0.92752 1.12559 1.14031 0.91301 1.25068 0.95444 0.99029 1.00102 1.70029 0.96762 1.49236 1.38476 0.86195 0.77599 0.79504 0.83309 1.20230 1.21413 1.21590 1.21603 0.93118 0.94384 0.92665 1.22999 0.88612 0.90872 1.00274 1.87771 1.39504 1.59076 1.44587 1.19252 0.96605 0.94942 0.95204 1.20923 0.94593 0.97437 0.97195 1.21109 0.98403 0.95001 0.99474 1.21116 0.99404 0.98748 0.94794 1.21044 0.96218 0.99017 0.97995 1.20988 0.98790 0.94784 0.98518 0.88530 0.88378 0.87223 0.90243 0.90077 0.76445 0.90046 0.90753 0.88606 0.95085 0.93430 0.91985 0.95560 0.93880 0.90025 0.86298 0.86221 0.86395 0.86282 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 14.32 29.01 0.42 -1.01 16 2 C -0.15 -1.21 9.09 -36.03 -0.33 -1.53 16 3 C -0.08 -0.75 4.97 -27.89 -0.14 -0.89 16 4 C -0.06 -0.67 2.37 -92.92 -0.22 -0.89 16 5 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 6 C 0.51 7.23 7.03 -10.98 -0.08 7.15 16 7 O -0.53 -9.59 15.13 5.56 0.08 -9.50 16 8 N -0.72 -9.84 5.31 -60.29 -0.32 -10.16 16 9 C 0.13 2.21 5.37 -4.04 -0.02 2.19 16 10 C 0.06 1.02 2.86 -26.58 -0.08 0.94 16 11 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 12 C 0.15 3.55 4.73 -3.53 -0.02 3.53 16 13 N -0.59 -14.62 3.05 -171.82 -0.52 -15.15 16 14 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 15 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 16 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 17 N -0.90 -25.72 11.14 55.49 0.62 -25.10 16 18 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.11 2.22 6.73 -3.53 -0.02 2.19 16 23 C 0.05 0.85 6.98 37.31 0.26 1.11 16 24 O -0.39 -6.97 10.14 -35.23 -0.36 -7.33 16 25 C -0.06 -0.67 3.64 -104.62 -0.38 -1.06 16 26 C -0.08 -0.99 7.88 -39.58 -0.31 -1.30 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 29 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 30 C -0.11 -1.15 9.67 -39.58 -0.38 -1.54 16 31 H 0.10 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.10 0.69 7.84 -52.49 -0.41 0.28 16 33 H 0.11 0.91 7.77 -52.49 -0.41 0.50 16 34 H 0.08 0.68 7.07 -51.93 -0.37 0.31 16 35 H 0.08 0.78 7.21 -51.93 -0.37 0.41 16 36 H 0.40 4.68 7.71 -40.82 -0.31 4.37 16 37 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.12 1.44 7.49 -52.48 -0.39 1.05 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.12 1.00 7.95 -52.49 -0.42 0.59 16 LS Contribution 406.48 15.07 6.13 6.13 Total: -1.00 -31.77 406.48 -10.15 -41.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.03 Total: 5.95 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.73 Total: -2.99 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.23 Total: -50.41 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.27 Total: -16.83 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.77 -10.15 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319330551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.000 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds