Wall clock time and date at job start Wed Apr 1 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47469 * 2 1 4 4 C 1.50702 * 109.47002 * 240.00242 * 2 1 3 5 5 H 1.08005 * 119.99988 * 240.00468 * 4 2 1 6 6 C 1.37881 * 120.00017 * 59.99501 * 4 2 1 7 7 N 1.31518 * 119.99690 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99996 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47261 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47241 * 120.00719 * 8 6 4 11 11 H 1.48503 * 109.47330 * 240.00478 * 8 6 4 12 12 C 1.53005 * 109.47283 * 120.00367 * 2 1 3 13 13 N 1.46501 * 109.47011 * 299.99871 * 12 2 1 14 14 C 1.34775 * 119.99843 * 180.02562 * 13 12 2 15 15 O 1.21350 * 119.99893 * 359.97438 * 14 13 12 16 16 C 1.49446 * 119.99770 * 179.97438 * 14 13 12 17 17 O 1.21350 * 120.00337 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00057 * 179.97438 * 16 14 13 19 19 C 1.46496 * 120.00426 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47298 * 180.02562 * 19 18 16 21 21 H 1.08998 * 115.56574 * 29.31409 * 20 19 18 22 22 C 1.53076 * 117.49498 * 243.60144 * 20 19 18 23 23 C 1.52995 * 59.98397 * 252.51799 * 22 20 19 24 24 H 1.09002 * 117.50244 * 107.50520 * 23 22 20 25 25 C 1.50707 * 117.49603 * 252.49762 * 23 22 20 26 26 C 1.38238 * 119.99792 * 188.75047 * 25 23 22 27 27 C 1.38235 * 119.99712 * 179.97438 * 26 25 23 28 28 C 1.38234 * 120.00220 * 359.97124 * 27 26 25 29 29 C 1.38233 * 120.00037 * 0.28719 * 28 27 26 30 30 C 1.38234 * 120.00179 * 8.72983 * 25 23 22 31 31 H 1.09005 * 109.46753 * 299.99391 * 1 2 3 32 32 H 1.08993 * 109.47354 * 59.99304 * 1 2 3 33 33 H 1.09000 * 109.47508 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47243 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47166 * 300.00795 * 3 2 1 36 36 H 1.09010 * 109.47080 * 60.00431 * 3 2 1 37 37 H 0.96994 * 119.99667 * 179.97438 * 7 6 4 38 38 H 1.08996 * 109.47209 * 179.97438 * 12 2 1 39 39 H 1.08998 * 109.47041 * 59.99920 * 12 2 1 40 40 H 0.97007 * 119.99872 * 359.97438 * 13 12 2 41 41 H 0.97007 * 119.99998 * 0.02562 * 18 16 14 42 42 H 1.09010 * 109.46791 * 60.00273 * 19 18 16 43 43 H 1.08998 * 109.47478 * 300.00576 * 19 18 16 44 44 H 1.09002 * 117.51206 * 145.03736 * 22 20 19 45 45 H 1.08995 * 117.51193 * 359.97438 * 22 20 19 46 46 H 1.08005 * 120.00068 * 359.97438 * 26 25 23 47 47 H 1.07999 * 119.99770 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.99744 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00395 * 179.72811 * 29 28 27 50 50 H 1.07999 * 119.99968 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6033 8 14 2.3211 -1.1202 -4.0080 9 1 3.1453 -2.2876 -3.6039 10 1 1.1658 -1.5865 -4.8162 11 1 3.1464 -0.1873 -4.8166 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6695 15 8 2.5755 -1.4777 3.7807 16 6 1.3802 0.2138 4.8897 17 8 0.6821 1.2002 4.7785 18 7 1.7058 -0.2467 6.1139 19 6 1.2185 0.4444 7.3101 20 6 1.7288 -0.2766 8.5592 21 1 2.6825 -0.7925 8.4479 22 6 0.6869 -0.9088 9.4856 23 6 1.4245 0.3605 9.9165 24 1 0.8611 1.2936 9.9196 25 6 2.4664 0.2268 10.9972 26 6 3.0342 1.3578 11.5535 27 6 3.9894 1.2352 12.5451 28 6 4.3764 -0.0183 12.9809 29 6 3.8125 -1.1493 12.4209 30 6 2.8539 -1.0266 11.4325 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9563 0.8901 37 1 0.7093 1.1618 -3.4843 38 1 3.1300 -0.7217 1.2490 39 1 1.6767 -1.7490 1.2492 40 1 0.9944 0.7582 2.3565 41 1 2.2635 -1.0354 6.2028 42 1 0.1284 0.4452 7.3104 43 1 1.5825 1.4718 7.3098 44 1 0.9552 -1.8405 9.9836 45 1 -0.3617 -0.8105 9.2052 46 1 2.7315 2.3372 11.2133 47 1 4.4334 2.1188 12.9794 48 1 5.1225 -0.1140 13.7560 49 1 4.1180 -2.1287 12.7583 50 1 2.4097 -1.9102 10.9985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326129894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:52 Heat of formation + Delta-G solvation = -29.863815 kcal Electronic energy + Delta-G solvation = -28470.263944 eV Core-core repulsion = 24462.859561 eV Total energy + Delta-G solvation = -4007.404383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 4.51 seconds Orbital eigenvalues (eV) -40.50161 -40.02518 -38.47711 -37.58751 -36.47849 -34.66402 -33.25277 -31.36063 -31.05033 -30.89036 -27.92787 -25.98826 -25.72316 -25.19817 -24.26272 -23.11561 -22.72239 -21.48892 -20.80146 -19.99079 -18.97644 -18.21773 -17.64163 -16.63973 -16.11980 -15.87756 -15.76024 -15.38803 -15.21568 -14.88489 -14.83574 -14.55660 -14.24805 -14.05206 -13.72927 -13.46103 -13.36713 -13.23534 -12.93649 -12.66613 -12.38213 -12.22458 -11.95040 -11.57290 -11.48818 -11.40394 -11.40250 -11.19357 -11.02402 -10.89588 -10.67487 -10.62718 -10.40403 -10.20295 -9.65547 -9.55621 -9.32634 -9.31461 -9.24806 -8.92743 -8.79429 -8.60424 -8.37627 -6.02950 -4.13600 0.90368 1.00979 1.65318 2.53189 3.14943 3.26775 3.35528 3.39616 3.47135 3.60097 3.88751 4.06141 4.30793 4.38893 4.47269 4.51318 4.61363 4.68391 4.74194 4.80697 4.83537 5.07544 5.18760 5.21053 5.23797 5.37883 5.40171 5.54811 5.64202 5.66116 5.73391 6.08616 6.11147 6.13302 6.14043 6.22313 6.23385 6.46891 6.60100 6.62963 6.82354 6.85059 6.93934 7.00251 7.09562 7.33249 7.54995 7.66685 7.71334 7.96623 7.99934 8.12588 8.32219 8.41104 8.86836 9.52322 10.98519 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.001543 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.188097 B =18137.646116 C =18365.156027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.536 6.536 16 C 0.508 3.492 17 O -0.521 6.521 18 N -0.704 5.704 19 C 0.149 3.851 20 C -0.154 4.154 21 H 0.116 0.884 22 C -0.166 4.166 23 C -0.106 4.106 24 H 0.118 0.882 25 C -0.051 4.051 26 C -0.113 4.113 27 C -0.118 4.118 28 C -0.126 4.126 29 C -0.117 4.117 30 C -0.121 4.121 31 H 0.008 0.992 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.413 0.587 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -0.407 29.521 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.414 6.414 16 C 0.289 3.711 17 O -0.396 6.396 18 N -0.358 5.358 19 C 0.026 3.974 20 C -0.172 4.172 21 H 0.134 0.866 22 C -0.203 4.203 23 C -0.124 4.124 24 H 0.136 0.864 25 C -0.051 4.051 26 C -0.131 4.131 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.135 4.135 30 C -0.138 4.138 31 H 0.027 0.973 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.250 0.750 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.777 -0.272 29.330 29.385 hybrid contribution 0.378 -0.430 -0.765 0.956 sum 2.155 -0.702 28.565 28.655 Atomic orbital electron populations 1.21849 0.97551 0.99274 1.00383 1.18404 0.93023 0.92910 0.90312 1.21851 0.98614 0.98225 1.00389 1.20987 1.31591 1.12147 0.89746 0.92294 1.24888 0.94839 0.94924 0.98886 1.69819 1.36562 1.22675 1.23187 0.86502 0.78620 0.79714 0.82948 1.19764 1.21064 1.21061 1.21943 0.98555 0.96035 0.82839 1.46227 1.50401 1.31381 1.05159 1.19943 0.82397 0.85226 0.84918 1.90724 1.37942 1.25973 1.86772 1.20483 0.81023 0.84679 0.84957 1.90757 1.36546 1.25447 1.86870 1.45707 1.53151 1.32278 1.04651 1.20970 0.99255 0.95888 0.81320 1.22627 1.01050 1.03566 0.89980 0.86643 1.23330 0.97843 0.96662 1.02424 1.21141 0.99549 0.98690 0.93067 0.86400 1.19137 0.96491 0.93343 0.96146 1.21007 0.96990 0.98246 0.96817 1.21161 0.97548 0.97609 0.97259 1.21179 1.00227 0.92714 1.00256 1.21152 0.96825 0.98723 0.96822 1.21093 0.97901 0.97115 0.97734 0.97279 0.89446 0.95351 0.95346 0.89441 0.97271 0.93001 0.91992 0.91990 0.75177 0.75038 0.90623 0.90475 0.87998 0.87794 0.85899 0.85984 0.86140 0.86026 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 2 C 0.05 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -3.04 8.08 37.15 0.30 -2.74 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.54 9.35 55.43 0.52 -23.02 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.68 -12.67 4.95 -60.73 -0.30 -12.97 16 14 C 0.50 8.69 7.89 -11.59 -0.09 8.60 16 15 O -0.54 -10.23 16.48 5.50 0.09 -10.14 16 16 C 0.51 7.73 7.89 -11.59 -0.09 7.64 16 17 O -0.52 -8.96 16.48 5.50 0.09 -8.87 16 18 N -0.70 -8.10 5.55 -60.73 -0.34 -8.44 16 19 C 0.15 1.36 5.96 -4.05 -0.02 1.33 16 20 C -0.15 -1.08 5.48 -90.58 -0.50 -1.58 16 21 H 0.12 0.83 8.04 -51.93 -0.42 0.41 16 22 C -0.17 -1.00 9.51 -26.69 -0.25 -1.25 16 23 C -0.11 -0.70 5.76 -91.77 -0.53 -1.22 16 24 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 25 C -0.05 -0.38 5.61 -104.62 -0.59 -0.97 16 26 C -0.11 -0.81 9.74 -39.58 -0.39 -1.20 16 27 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 28 C -0.13 -0.83 10.05 -39.58 -0.40 -1.22 16 29 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 30 C -0.12 -0.86 9.30 -39.58 -0.37 -1.22 16 31 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 32 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 36 H 0.01 0.17 6.86 -51.92 -0.36 -0.18 16 37 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.41 7.54 5.64 -40.82 -0.23 7.31 16 41 H 0.41 4.31 7.87 -40.82 -0.32 3.99 16 42 H 0.08 0.69 7.88 -51.92 -0.41 0.29 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.54 6.18 -51.93 -0.32 0.22 16 45 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 49 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 50 H 0.12 0.71 6.02 -52.49 -0.32 0.40 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -29.29 407.92 -10.24 -39.53 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.54 Total: 9.05 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.88 Total: -6.86 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.12 Total: -44.42 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.29 -10.24 -39.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326129894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.667 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.51 seconds