Wall clock time and date at job start Wed Apr 1 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.53006 * 109.47111 * 120.00152 * 2 1 3 5 5 H 1.08999 * 110.91342 * 297.54429 * 4 2 1 6 6 C 1.55157 * 111.00444 * 173.65025 * 4 2 1 7 7 C 1.54314 * 102.86082 * 206.22785 * 6 4 2 8 8 N 1.47013 * 107.27615 * 22.52654 * 7 6 4 9 9 C 1.34777 * 125.64658 * 180.96864 * 8 7 6 10 10 O 1.21349 * 120.00283 * 179.68981 * 9 8 7 11 11 C 1.49452 * 120.00186 * 359.68717 * 9 8 7 12 12 O 1.21345 * 119.99908 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00186 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99987 * 180.02562 * 13 11 9 15 15 C 1.50708 * 109.47089 * 180.02562 * 14 13 11 16 16 C 1.38629 * 119.75158 * 89.99594 * 15 14 13 17 17 C 1.37616 * 120.24685 * 179.97438 * 16 15 14 18 18 C 1.40714 * 119.74604 * 0.02562 * 17 16 15 19 19 C 1.41395 * 120.24112 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99568 * 155.58334 * 19 18 17 21 21 C 1.39946 * 120.00621 * 335.31228 * 19 18 17 22 22 N 1.30823 * 119.99390 * 342.55986 * 21 19 18 23 23 Si 1.86793 * 120.00145 * 162.56213 * 21 19 18 24 24 H 1.48504 * 109.47123 * 90.00063 * 23 21 19 25 25 H 1.48504 * 109.46771 * 209.99514 * 23 21 19 26 26 H 1.48495 * 109.47393 * 329.99926 * 23 21 19 27 27 C 1.40707 * 119.51119 * 0.26996 * 18 17 16 28 28 C 1.37627 * 119.74628 * 359.42829 * 27 18 17 29 29 C 1.47422 * 108.70477 * 0.70354 * 8 7 6 30 30 H 1.09003 * 109.47085 * 59.99590 * 1 2 3 31 31 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47069 * 299.99977 * 1 2 3 33 33 H 1.08999 * 109.47069 * 240.00023 * 2 1 3 34 34 H 1.09001 * 109.47158 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46981 * 299.99862 * 3 2 1 36 36 H 1.08999 * 109.47029 * 59.99998 * 3 2 1 37 37 H 1.09003 * 110.71828 * 324.78734 * 6 4 2 38 38 H 1.08998 * 110.72350 * 87.88166 * 6 4 2 39 39 H 1.09001 * 109.98618 * 263.04217 * 7 6 4 40 40 H 1.09004 * 109.77135 * 141.88402 * 7 6 4 41 41 H 0.96996 * 119.99932 * 0.02562 * 13 11 9 42 42 H 1.08994 * 109.47721 * 59.99587 * 14 13 11 43 43 H 1.08998 * 109.46678 * 299.99599 * 14 13 11 44 44 H 1.07999 * 119.87506 * 0.02562 * 16 15 14 45 45 H 1.08001 * 120.12717 * 180.02562 * 17 16 15 46 46 H 0.97002 * 119.99788 * 179.97438 * 22 21 19 47 47 H 1.08000 * 120.12688 * 179.69910 * 27 18 17 48 48 H 1.07993 * 119.87846 * 180.27171 * 28 27 18 49 49 H 1.09000 * 110.37106 * 94.93911 * 29 8 7 50 50 H 1.09005 * 110.36412 * 217.26274 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7257 -0.2014 2.1543 6 6 3.5826 -0.8823 1.2077 7 6 3.8215 -2.1302 2.0835 8 7 2.5680 -2.8982 2.1003 9 6 2.3607 -4.0486 2.7712 10 8 1.2789 -4.5959 2.7174 11 6 3.4630 -4.6503 3.5814 12 8 4.5445 -4.1029 3.6355 13 7 3.2554 -5.8004 4.2527 14 6 4.3358 -6.3899 5.0473 15 6 3.8489 -7.6624 5.6915 16 6 3.9916 -8.8694 5.0247 17 6 3.5510 -10.0375 5.6036 18 6 2.9534 -10.0034 6.8771 19 6 2.4966 -11.1973 7.4815 20 1 2.4104 -11.2597 8.5563 21 6 2.1506 -12.2961 6.6869 22 7 1.9183 -12.1324 5.4099 23 14 2.0204 -13.9962 7.4496 24 1 0.6321 -14.2196 7.9270 25 1 2.3654 -15.0224 6.4331 26 1 2.9602 -14.0983 8.5948 27 6 2.8082 -8.7718 7.5419 28 6 3.2617 -7.6169 6.9465 29 6 1.5735 -2.1983 1.2669 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.9253 -1.0517 0.1869 38 1 4.0732 -0.0091 1.6378 39 1 4.0853 -1.8289 3.0973 40 1 4.6207 -2.7344 1.6543 41 1 2.3908 -6.2378 4.2096 42 1 4.6443 -5.6860 5.8201 43 1 5.1835 -6.6125 4.3993 44 1 4.4510 -8.8931 4.0476 45 1 3.6636 -10.9768 5.0826 46 1 1.6788 -12.8940 4.8590 47 1 2.3465 -8.7336 8.5175 48 1 3.1553 -6.6710 7.4567 49 1 1.5700 -2.6072 0.2565 50 1 0.5819 -2.2777 1.7126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326938827.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:09 Heat of formation + Delta-G solvation = -83.585622 kcal Electronic energy + Delta-G solvation = -28963.528097 eV Core-core repulsion = 24953.794162 eV Total energy + Delta-G solvation = -4009.733935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.89787 -40.26668 -39.44085 -38.97883 -36.61968 -35.98205 -35.08483 -32.16227 -31.83995 -31.20208 -30.03457 -28.90394 -27.83179 -26.59359 -25.16846 -23.17320 -22.91627 -22.83199 -21.86094 -20.90959 -20.75188 -19.26182 -18.97804 -18.09996 -17.44254 -17.24075 -16.76971 -16.54984 -16.12470 -15.85772 -15.62314 -15.47614 -15.06194 -14.91382 -14.79521 -14.32004 -14.24991 -14.20530 -13.85166 -13.84869 -13.61913 -13.51834 -13.43738 -13.01758 -12.92242 -12.84805 -12.73952 -12.70595 -12.51530 -12.38320 -12.12618 -11.84037 -11.55042 -11.51000 -11.42240 -11.35763 -11.32131 -11.07164 -10.69157 -10.26512 -9.87527 -9.42137 -9.30951 -8.68561 -6.39306 0.29830 0.75113 1.11671 1.27935 1.38059 1.49556 1.54824 2.08053 2.18756 2.45692 2.74977 3.28521 3.53565 3.57809 3.72200 3.76258 4.10204 4.18663 4.26127 4.27425 4.31647 4.41361 4.46462 4.48501 4.62408 4.63192 4.70614 4.77598 4.85970 4.90182 4.93531 4.97443 5.02349 5.05895 5.11876 5.12484 5.14106 5.19843 5.29535 5.32976 5.34524 5.40914 5.49044 5.56727 5.66235 5.85465 6.00115 6.06493 6.16133 6.22846 6.33761 6.59401 6.65664 6.89387 6.89479 6.98255 8.27858 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.001753 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.993990 B =15969.262399 C =16546.029855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.087 4.087 5 H 0.087 0.913 6 C -0.119 4.119 7 C 0.102 3.898 8 N -0.590 5.590 9 C 0.515 3.485 10 O -0.552 6.552 11 C 0.504 3.496 12 O -0.537 6.537 13 N -0.686 5.686 14 C 0.192 3.808 15 C -0.234 4.234 16 C -0.082 4.082 17 C -0.192 4.192 18 C 0.085 3.915 19 C -0.496 4.496 20 H 0.078 0.922 21 C 0.035 3.965 22 N -0.820 5.820 23 Si 0.983 3.017 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.258 1.258 27 C -0.244 4.244 28 C -0.067 4.067 29 C 0.102 3.898 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.411 0.589 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.289 0.711 47 H 0.099 0.901 48 H 0.118 0.882 49 H 0.080 0.920 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 22.991 -11.560 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 C -0.202 4.202 4 C -0.106 4.106 5 H 0.105 0.895 6 C -0.156 4.156 7 C -0.019 4.019 8 N -0.323 5.323 9 C 0.298 3.702 10 O -0.431 6.431 11 C 0.285 3.715 12 O -0.415 6.415 13 N -0.337 5.337 14 C 0.071 3.929 15 C -0.236 4.236 16 C -0.101 4.101 17 C -0.212 4.212 18 C 0.083 3.917 19 C -0.525 4.525 20 H 0.096 0.904 21 C -0.181 4.181 22 N -0.445 5.445 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.190 1.190 26 H -0.182 1.182 27 C -0.264 4.264 28 C -0.085 4.085 29 C -0.019 4.019 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.247 0.753 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.117 0.883 48 H 0.136 0.864 49 H 0.098 0.902 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.419 22.899 -11.718 25.762 hybrid contribution -0.724 -1.491 0.407 1.707 sum 0.695 21.408 -11.311 24.223 Atomic orbital electron populations 1.21908 0.95143 1.01727 1.02285 1.21034 0.95743 0.96797 0.96219 1.21820 1.01627 0.94660 1.02131 1.22445 0.95471 0.92447 1.00246 0.89451 1.22816 0.95488 0.96506 1.00815 1.22341 0.84812 0.93077 1.01703 1.48415 1.16466 1.21395 1.46012 1.19957 0.87870 0.81493 0.80891 1.90765 1.26687 1.61662 1.63938 1.20083 0.88087 0.82224 0.81156 1.90699 1.25821 1.61593 1.63425 1.46325 1.17590 1.22881 1.46940 1.19996 0.87976 0.91526 0.93386 1.19201 1.13598 0.93439 0.97371 1.20781 0.98602 0.92596 0.98074 1.21268 1.04288 0.97372 0.98253 1.18033 0.88397 0.92973 0.92299 1.19911 1.40054 0.97441 0.95058 0.90408 1.26795 0.91479 1.04892 0.94902 1.69872 1.32291 1.34495 1.07863 0.85195 0.79693 0.75673 0.79134 1.18685 1.19039 1.18163 1.21176 1.10413 0.92775 1.02003 1.20716 0.96254 0.97055 0.94522 1.22641 0.92008 0.92554 0.94688 0.91811 0.93187 0.92627 0.90345 0.91715 0.92112 0.92634 0.89038 0.87728 0.90954 0.91042 0.75316 0.90508 0.91041 0.87590 0.88067 0.89986 0.88280 0.86420 0.90212 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.99 71.98 0.65 -0.83 16 2 C -0.08 -0.68 2.43 -10.80 -0.03 -0.71 16 3 C -0.15 -0.96 9.04 71.98 0.65 -0.31 16 4 C -0.09 -1.01 2.56 -9.40 -0.02 -1.03 16 5 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 6 C -0.12 -1.25 5.59 31.78 0.18 -1.08 16 7 C 0.10 1.91 5.48 86.73 0.48 2.38 16 8 N -0.59 -13.99 3.33 -813.41 -2.71 -16.70 16 9 C 0.51 15.86 7.91 87.27 0.69 16.55 16 10 O -0.55 -19.94 16.73 -3.24 -0.05 -20.00 16 11 C 0.50 16.15 7.86 87.27 0.69 16.84 16 12 O -0.54 -17.68 14.12 -3.23 -0.05 -17.72 16 13 N -0.69 -22.85 5.54 -468.14 -2.59 -25.44 16 14 C 0.19 6.50 5.79 85.64 0.50 7.00 16 15 C -0.23 -9.51 5.27 -19.67 -0.10 -9.61 16 16 C -0.08 -3.67 9.67 22.22 0.21 -3.45 16 17 C -0.19 -9.97 8.70 22.73 0.20 -9.78 16 18 C 0.09 4.57 5.57 -21.29 -0.12 4.45 16 19 C -0.50 -26.50 9.05 23.46 0.21 -26.29 16 20 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 21 C 0.04 1.75 5.15 85.26 0.44 2.19 16 22 N -0.82 -42.64 10.95 21.83 0.24 -42.40 16 23 Si 0.98 37.79 29.59 68.60 2.03 39.82 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 27 C -0.24 -11.75 9.80 22.73 0.22 -11.53 16 28 C -0.07 -2.81 9.67 22.22 0.21 -2.60 16 29 C 0.10 1.85 5.34 86.85 0.46 2.31 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.56 7.27 -2.39 -0.02 0.55 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 34 H 0.06 0.35 7.50 -2.39 -0.02 0.34 16 35 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 0.78 8.01 -2.39 -0.02 0.76 16 38 H 0.10 0.75 8.13 -2.39 -0.02 0.73 16 39 H 0.07 1.47 7.59 -2.39 -0.02 1.45 16 40 H 0.07 1.45 7.68 -2.38 -0.02 1.44 16 41 H 0.41 14.39 7.94 -92.71 -0.74 13.66 16 42 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 43 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 44 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 46 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 47 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 48 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 49 H 0.08 1.35 8.04 -2.39 -0.02 1.33 16 50 H 0.07 1.46 7.94 -2.38 -0.02 1.44 16 Total: -1.00 -62.44 407.07 2.59 -59.86 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.20 Total: 38.07 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 5.52 Total: -15.48 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -5.06 Total: -84.54 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.10 Total: -37.72 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -62.44 2.59 -59.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326938827.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.726 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds