Wall clock time and date at job start Wed Apr 1 2020 03:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46981 * 2 1 4 4 C 1.52995 * 109.47233 * 120.00013 * 2 1 3 5 5 N 1.46497 * 109.47214 * 300.00205 * 4 2 1 6 6 C 1.34778 * 120.00288 * 180.02562 * 5 4 2 7 7 O 1.21356 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.49450 * 120.00518 * 180.02562 * 6 5 4 9 9 O 1.21354 * 119.99602 * 4.97019 * 8 6 5 10 10 N 1.34771 * 119.99952 * 184.97328 * 8 6 5 11 11 C 1.46507 * 119.99624 * 174.27882 * 10 8 6 12 12 C 1.52998 * 109.46883 * 183.79109 * 11 10 8 13 13 C 1.50698 * 115.55381 * 306.41422 * 12 11 10 14 14 H 1.08000 * 119.99829 * 145.14928 * 13 12 11 15 15 C 1.37868 * 120.00083 * 325.15749 * 13 12 11 16 16 N 1.31516 * 120.00202 * 349.98902 * 15 13 12 17 17 Si 1.86804 * 120.00009 * 169.99659 * 15 13 12 18 18 H 1.48497 * 109.47552 * 59.99552 * 17 15 13 19 19 H 1.48503 * 109.47112 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47107 * 299.99262 * 17 15 13 21 21 C 1.53002 * 117.49364 * 160.74567 * 12 11 10 22 22 C 1.53005 * 117.49759 * 92.08767 * 12 11 10 23 23 C 1.50697 * 109.47432 * 240.00473 * 2 1 3 24 24 C 1.38237 * 119.99758 * 239.72775 * 23 2 1 25 25 C 1.38234 * 119.99675 * 179.76567 * 24 23 2 26 26 C 1.38237 * 120.00245 * 0.50326 * 25 24 23 27 27 C 1.38239 * 119.99648 * 359.74497 * 26 25 24 28 28 C 1.38224 * 120.00052 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47528 * 299.99554 * 1 2 3 30 30 H 1.08998 * 109.47482 * 60.00272 * 1 2 3 31 31 H 1.09005 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47376 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46946 * 300.00643 * 3 2 1 34 34 H 1.08998 * 109.46625 * 59.99893 * 3 2 1 35 35 H 1.09003 * 109.47191 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47105 * 60.00500 * 4 2 1 37 37 H 0.97001 * 120.00520 * 0.02562 * 5 4 2 38 38 H 0.96996 * 120.00463 * 354.01002 * 10 8 6 39 39 H 1.08999 * 109.47288 * 303.79655 * 11 10 8 40 40 H 1.09000 * 109.46808 * 63.79952 * 11 10 8 41 41 H 0.97000 * 120.00173 * 185.03834 * 16 15 13 42 42 H 1.08998 * 117.50481 * 0.02562 * 21 12 11 43 43 H 1.09001 * 117.49673 * 145.02407 * 21 12 11 44 44 H 1.08997 * 117.50128 * 214.97712 * 22 12 11 45 45 H 1.09003 * 117.49406 * 359.97438 * 22 12 11 46 46 H 1.07996 * 120.00309 * 359.97438 * 24 23 2 47 47 H 1.08006 * 120.00163 * 180.22946 * 25 24 23 48 48 H 1.08001 * 119.99978 * 179.72870 * 26 25 24 49 49 H 1.08000 * 119.99415 * 179.97438 * 27 26 25 50 50 H 1.08001 * 119.99791 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8777 -0.4908 3.6695 7 8 2.5754 -1.4775 3.7808 8 6 1.3790 0.2133 4.8898 9 8 0.6081 1.1441 4.7807 10 7 1.7856 -0.1855 6.1113 11 6 1.3979 0.5804 7.2985 12 6 2.0628 -0.0259 8.5360 13 6 1.8325 -1.5010 8.7408 14 1 2.6129 -2.1156 9.1645 15 6 0.6257 -2.0659 8.3870 16 7 -0.3891 -1.2968 8.0577 17 14 0.4317 -3.9238 8.3757 18 1 0.6922 -4.4572 9.7368 19 1 -0.9512 -4.2746 7.9634 20 1 1.3995 -4.5167 7.4181 21 6 2.1665 0.8529 9.7841 22 6 3.4185 0.5430 8.9597 23 6 2.0324 -0.7103 -1.2305 24 6 2.8318 -1.8309 -1.1036 25 6 3.2886 -2.4853 -2.2323 26 6 2.9547 -2.0130 -3.4879 27 6 2.1595 -0.8893 -3.6146 28 6 1.6988 -0.2378 -2.4860 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2491 37 1 0.9936 0.7578 2.3565 38 1 2.3316 -0.9818 6.2048 39 1 1.7190 1.6157 7.1839 40 1 0.3147 0.5466 7.4149 41 1 -1.2579 -1.6899 7.8799 42 1 1.7607 1.8628 9.7239 43 1 2.0685 0.3640 10.7534 44 1 4.1437 -0.1496 9.3869 45 1 3.8368 1.3489 8.3566 46 1 3.0966 -2.1971 -0.1228 47 1 3.9102 -3.3630 -2.1333 48 1 3.3153 -2.5217 -4.3697 49 1 1.8990 -0.5201 -4.5956 50 1 1.0779 0.6403 -2.5851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328136855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:26 Heat of formation + Delta-G solvation = -27.784928 kcal Electronic energy + Delta-G solvation = -29911.197810 eV Core-core repulsion = 25903.883574 eV Total energy + Delta-G solvation = -4007.314235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.55357 -39.72702 -38.09301 -36.87012 -36.67330 -33.81663 -32.87907 -32.18741 -31.29712 -29.95980 -27.56911 -27.53529 -26.36240 -25.47827 -23.58641 -22.76469 -22.04855 -21.23751 -19.93454 -19.49089 -19.33676 -18.03995 -17.21331 -16.35098 -16.15608 -15.67131 -15.48574 -15.26323 -14.88348 -14.79222 -14.53973 -14.42288 -14.06396 -13.82036 -13.66705 -13.60860 -13.41844 -13.11751 -12.83642 -12.63838 -12.37447 -12.14593 -12.07203 -11.80058 -11.68696 -11.52995 -11.34012 -11.12641 -10.99584 -10.95141 -10.83221 -10.77548 -10.52764 -10.29419 -9.65327 -9.20215 -9.19429 -9.08049 -8.97416 -8.96532 -8.86225 -8.33872 -7.99683 -6.09600 -4.19702 1.09301 1.14872 1.99141 2.84632 3.25735 3.32193 3.35417 3.52008 3.82327 4.17647 4.27202 4.30739 4.38633 4.66653 4.73978 4.76117 4.85203 4.88944 4.90106 5.20273 5.24081 5.29331 5.35670 5.45013 5.47691 5.48631 5.58992 5.62762 5.69400 5.78163 5.79708 5.92412 5.96052 6.01659 6.21220 6.24889 6.26196 6.35351 6.38498 6.49536 6.54222 6.64618 6.73982 6.83480 7.00560 7.20789 7.26692 7.42236 7.50245 7.87496 8.03323 8.27546 8.38046 8.78009 8.81983 9.41937 10.87330 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.002393 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.512003 B =11697.234474 C =12397.351166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.142 4.142 4 C 0.127 3.873 5 N -0.707 5.707 6 C 0.507 3.493 7 O -0.521 6.521 8 C 0.493 3.507 9 O -0.547 6.547 10 N -0.649 5.649 11 C 0.158 3.842 12 C 0.035 3.965 13 C -0.500 4.500 14 H 0.063 0.937 15 C 0.075 3.925 16 N -0.870 5.870 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.194 4.194 22 C -0.211 4.211 23 C -0.065 4.065 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.112 4.112 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.413 0.587 39 H 0.032 0.968 40 H 0.116 0.884 41 H 0.265 0.735 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 2.829 -21.688 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 C -0.199 4.199 4 C 0.003 3.997 5 N -0.362 5.362 6 C 0.289 3.711 7 O -0.396 6.396 8 C 0.272 3.728 9 O -0.427 6.427 10 N -0.298 5.298 11 C 0.035 3.965 12 C 0.035 3.965 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.506 5.506 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.232 4.232 22 C -0.248 4.248 23 C -0.066 4.066 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.130 4.130 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.250 0.750 39 H 0.051 0.949 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.568 2.757 -21.762 22.224 hybrid contribution -0.129 -1.054 0.060 1.063 sum 3.440 1.704 -21.702 22.039 Atomic orbital electron populations 1.21938 0.92771 1.02791 1.02492 1.19721 0.96585 0.95751 0.91607 1.21934 1.01676 0.93836 1.02465 1.21560 0.99423 0.96198 0.82518 1.45778 1.53338 1.32428 1.04677 1.20624 0.80804 0.84694 0.85008 1.90743 1.36565 1.25380 1.86904 1.19769 0.83162 0.85037 0.84819 1.90681 1.34994 1.30227 1.86758 1.45704 1.49906 1.29379 1.04794 1.21213 1.03726 0.90012 0.81505 1.19168 0.92392 0.94183 0.90801 1.20459 1.00044 0.90483 1.42685 0.91871 1.24979 0.95751 0.98220 0.94016 1.69808 1.00773 1.34834 1.45177 0.86642 0.77421 0.85337 0.78698 1.20181 1.21186 1.19718 1.22928 1.02361 0.99956 0.97972 1.22978 0.92354 1.03333 1.06178 1.19638 0.97476 0.95569 0.93872 1.21277 0.97794 0.95517 0.99348 1.21177 0.99854 0.99838 0.92522 1.21160 0.98859 0.96956 0.97454 1.21118 0.98193 0.96042 0.98419 1.20941 1.00276 1.00058 0.91773 0.91631 0.91926 0.91997 0.92031 0.91915 0.91715 0.90748 0.90751 0.75202 0.75018 0.94933 0.86599 0.92490 0.91433 0.90079 0.90459 0.91306 0.85343 0.86009 0.86271 0.86178 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.11 37.16 0.30 -0.95 16 2 C -0.04 -0.33 0.61 -155.66 -0.10 -0.42 16 3 C -0.14 -1.18 8.11 37.16 0.30 -0.88 16 4 C 0.13 1.45 3.22 -4.05 -0.01 1.44 16 5 N -0.71 -9.76 4.95 -60.73 -0.30 -10.06 16 6 C 0.51 9.14 7.89 -11.58 -0.09 9.05 16 7 O -0.52 -10.45 16.49 5.49 0.09 -10.35 16 8 C 0.49 10.19 7.88 -11.59 -0.09 10.10 16 9 O -0.55 -11.97 16.50 5.49 0.09 -11.88 16 10 N -0.65 -14.32 5.27 -60.73 -0.32 -14.64 16 11 C 0.16 3.67 4.73 -4.04 -0.02 3.65 16 12 C 0.04 0.83 2.00 -155.66 -0.31 0.52 16 13 C -0.50 -12.81 8.27 -34.44 -0.28 -13.09 16 14 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 15 C 0.08 1.95 5.13 -17.82 -0.09 1.85 16 16 N -0.87 -23.28 10.72 55.43 0.59 -22.68 16 17 Si 0.89 20.58 29.55 -169.99 -5.02 15.55 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.19 -4.19 9.96 -26.69 -0.27 -4.46 16 22 C -0.21 -4.38 9.92 -26.69 -0.26 -4.64 16 23 C -0.07 -0.59 4.76 -104.62 -0.50 -1.09 16 24 C -0.12 -1.15 8.98 -39.58 -0.36 -1.51 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 26 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 27 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 28 C -0.11 -0.92 8.71 -39.59 -0.34 -1.27 16 29 H 0.06 0.60 6.86 -51.93 -0.36 0.24 16 30 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 34 H 0.06 0.55 6.86 -51.93 -0.36 0.20 16 35 H 0.07 0.87 7.50 -51.93 -0.39 0.48 16 36 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 37 H 0.41 5.22 5.65 -40.82 -0.23 4.99 16 38 H 0.41 9.31 7.40 -40.82 -0.30 9.01 16 39 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.12 3.04 6.03 -51.93 -0.31 2.73 16 41 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.13 1.21 5.90 -52.49 -0.31 0.90 16 47 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.81 7.10 -52.49 -0.37 0.44 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -28.89 406.10 -9.63 -38.52 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -7.56 Total: 15.23 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.32 Total: -5.80 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.03 Total: -47.39 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.18 Total: -22.24 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.89 -9.63 -38.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328136855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.734 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds