Wall clock time and date at job start Wed Apr 1 2020 03:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46598 * 181.36678 * 3 2 1 5 5 C 1.35715 * 116.99557 * 180.02562 * 4 3 2 6 6 C 1.38991 * 119.91055 * 0.29552 * 5 4 3 7 7 C 1.37709 * 120.08363 * 180.25858 * 6 5 4 8 8 C 1.39730 * 119.90759 * 359.44418 * 7 6 5 9 9 C 1.47611 * 120.08287 * 180.30081 * 8 7 6 10 10 O 1.21586 * 119.99916 * 328.37271 * 9 8 7 11 11 N 1.34779 * 119.99878 * 148.38099 * 9 8 7 12 12 C 1.46504 * 120.00056 * 4.57642 * 11 9 8 13 13 C 1.46497 * 120.00018 * 184.57999 * 11 9 8 14 14 C 1.52999 * 109.47543 * 89.99586 * 13 11 9 15 15 C 1.52997 * 109.46763 * 300.00238 * 14 13 11 16 16 C 1.53004 * 109.46841 * 59.99949 * 14 13 11 17 17 C 1.52994 * 109.47208 * 179.97438 * 14 13 11 18 18 N 1.46505 * 109.47064 * 179.97438 * 17 14 13 19 19 C 1.36933 * 119.99763 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00428 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99710 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99895 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99975 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46893 * 60.00049 * 23 21 19 25 25 H 1.48501 * 109.47214 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47300 * 299.99808 * 23 21 19 27 27 C 1.39727 * 119.82971 * 0.28210 * 8 7 6 28 28 C 1.37708 * 119.90863 * 359.97438 * 27 8 7 29 29 H 4.38452 * 5.44452 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47022 * 61.36597 * 3 2 1 31 31 H 1.08999 * 109.47195 * 301.36295 * 3 2 1 32 32 H 1.07996 * 119.96258 * 0.02562 * 6 5 4 33 33 H 1.07998 * 120.04450 * 179.72211 * 7 6 5 34 34 H 1.08995 * 109.47388 * 93.61104 * 12 11 9 35 35 H 1.08999 * 109.46945 * 213.62063 * 12 11 9 36 36 H 1.09007 * 109.47059 * 333.61501 * 12 11 9 37 37 H 1.09001 * 109.46902 * 209.99895 * 13 11 9 38 38 H 1.09004 * 109.46930 * 329.99472 * 13 11 9 39 39 H 1.08997 * 109.47489 * 60.00019 * 15 14 13 40 40 H 1.09004 * 109.47021 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47414 * 299.99378 * 15 14 13 42 42 H 1.09001 * 109.47079 * 60.00013 * 16 14 13 43 43 H 1.09004 * 109.46677 * 180.02562 * 16 14 13 44 44 H 1.08998 * 109.47044 * 300.00396 * 16 14 13 45 45 H 1.08995 * 109.47612 * 300.00554 * 17 14 13 46 46 H 1.09004 * 109.46930 * 60.00091 * 17 14 13 47 47 H 0.96997 * 119.99914 * 0.02562 * 18 17 14 48 48 H 0.97003 * 120.00056 * 180.02562 * 22 21 19 49 49 H 1.08001 * 120.04907 * 180.02562 * 27 8 7 50 50 H 1.07999 * 119.95347 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1217 1.3479 0.0321 5 6 4.4671 1.5263 0.0358 6 6 5.3125 0.4236 0.0028 7 6 6.6782 0.6003 0.0118 8 6 7.2135 1.8906 0.0425 9 6 8.6768 2.0847 0.0455 10 8 9.3980 1.2627 0.5771 11 7 9.2135 3.1732 -0.5408 12 6 8.3413 4.2129 -1.0927 13 6 10.6689 3.3165 -0.6263 14 6 11.1680 2.6852 -1.9275 15 6 10.7997 1.2004 -1.9480 16 6 10.5153 3.3891 -3.1190 17 6 12.6879 2.8356 -2.0171 18 7 13.1659 2.2305 -3.2628 19 6 14.5022 2.2441 -3.5618 20 1 15.2037 2.7004 -2.8792 21 6 14.9550 1.6712 -4.7424 22 7 14.1001 1.1147 -5.5740 23 14 16.7777 1.6903 -5.1507 24 1 17.5298 0.9710 -4.0913 25 1 16.9995 1.0194 -6.4568 26 1 17.2530 3.0951 -5.2283 27 6 6.3602 2.9967 0.0699 28 6 4.9956 2.8114 0.0660 29 1 -1.0503 -0.0004 0.0002 30 1 3.0096 -0.4916 -0.9019 31 1 3.0096 -0.5340 0.8775 32 1 4.8980 -0.5733 -0.0262 33 1 7.3345 -0.2571 -0.0094 34 1 8.1823 4.9889 -0.3440 35 1 8.8096 4.6494 -1.9748 36 1 7.3829 3.7738 -1.3699 37 1 10.9312 4.3744 -0.6117 38 1 11.1339 2.8151 0.2225 39 1 9.7169 1.0937 -1.8844 40 1 11.1557 0.7505 -2.8748 41 1 11.2647 0.6989 -1.0992 42 1 10.7776 4.4469 -3.1044 43 1 10.8706 2.9390 -4.0460 44 1 9.4324 3.2824 -3.0553 45 1 12.9500 3.8935 -2.0026 46 1 13.1532 2.3344 -1.1683 47 1 12.5359 1.8203 -3.8757 48 1 14.4166 0.7140 -6.3988 49 1 6.7701 3.9956 0.0932 50 1 4.3353 3.6658 0.0868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329341497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:34 Heat of formation + Delta-G solvation = 46.320556 kcal Electronic energy + Delta-G solvation = -29658.295375 eV Core-core repulsion = 25654.194594 eV Total energy + Delta-G solvation = -4004.100780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.98792 -40.03319 -37.91803 -36.99012 -35.20403 -33.97571 -33.13214 -31.52292 -30.82052 -29.97186 -28.12265 -27.91441 -26.70305 -25.98865 -25.32843 -23.35303 -22.95434 -22.21324 -19.93058 -19.06197 -18.69021 -18.34589 -17.35750 -17.18750 -16.56950 -16.54308 -15.91869 -15.70516 -15.12903 -14.78325 -14.38721 -14.30960 -14.03060 -13.84179 -13.68830 -13.44263 -13.33654 -13.24630 -12.94979 -12.82260 -12.62900 -12.30723 -12.27009 -11.98228 -11.72258 -11.42599 -11.19506 -11.09659 -10.95242 -10.91774 -10.76392 -10.71696 -10.66199 -10.24949 -10.21693 -9.98688 -9.68860 -9.61333 -9.36315 -8.80514 -8.64664 -8.47931 -6.83612 -5.70528 -2.97810 0.68923 0.97647 1.73962 2.20589 2.71228 2.98551 3.08104 3.48037 3.52164 3.53297 3.53764 3.81268 4.34634 4.37331 4.47243 4.59257 4.65250 4.68164 4.82819 4.96834 5.06225 5.13731 5.20187 5.21260 5.28924 5.34804 5.44741 5.56566 5.60868 5.63487 5.72224 5.79492 5.90011 5.96960 6.01680 6.06551 6.16475 6.19984 6.24097 6.34848 6.46877 6.57000 6.66359 6.78784 6.82276 6.86844 6.95768 6.99483 7.02211 7.38316 7.75411 8.20494 8.49067 9.60046 10.19648 10.54511 11.52568 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.001909 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.811727 B =14664.372384 C =15188.228885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.149 3.851 6 C -0.217 4.217 7 C -0.019 4.019 8 C -0.165 4.165 9 C 0.560 3.440 10 O -0.529 6.529 11 N -0.602 5.602 12 C 0.053 3.947 13 C 0.127 3.873 14 C -0.086 4.086 15 C -0.124 4.124 16 C -0.137 4.137 17 C 0.165 3.835 18 N -0.727 5.727 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.062 4.062 28 C -0.159 4.159 29 H 0.225 0.775 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.152 0.848 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.406 3.265 12.691 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.203 4.203 3 C 0.097 3.903 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.236 4.236 7 C -0.038 4.038 8 C -0.168 4.168 9 C 0.349 3.651 10 O -0.407 6.407 11 N -0.334 5.334 12 C -0.090 4.090 13 C 0.004 3.996 14 C -0.087 4.087 15 C -0.182 4.182 16 C -0.194 4.194 17 C 0.037 3.963 18 N -0.373 5.373 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.080 4.080 28 C -0.178 4.178 29 H 0.242 0.758 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.169 0.831 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.977 3.001 12.977 30.085 hybrid contribution 0.642 -0.327 -0.610 0.945 sum -26.334 2.675 12.366 29.216 Atomic orbital electron populations 1.25063 0.95901 0.96161 1.00115 1.22235 0.93509 1.03207 1.01337 1.19325 0.85051 0.82732 1.03183 1.86067 1.19542 1.28302 1.88279 1.19199 0.81561 0.94425 0.94447 1.21208 0.94047 0.98243 1.10108 1.21032 0.94201 0.96550 0.92029 1.19887 0.93400 0.94298 1.09200 1.18138 0.87321 0.81275 0.78381 1.90809 1.62029 1.43151 1.44669 1.47614 1.07328 1.20724 1.57781 1.22613 0.95949 0.90971 0.99450 1.21584 0.78181 1.00954 0.98848 1.21104 0.96936 0.96430 0.94234 1.21717 0.99310 0.94645 1.02513 1.21901 0.98895 0.99781 0.98824 1.20580 0.89403 0.95823 0.90472 1.42376 1.05742 1.69092 1.20041 1.19203 0.84365 1.30741 1.02462 0.91324 1.24713 0.97569 1.01404 0.97400 1.69648 1.32831 1.43703 1.12221 0.86270 0.85259 0.77439 0.77239 1.21345 1.21773 1.21366 1.21789 0.92147 0.99525 0.94588 1.20370 0.95023 0.94820 1.07539 0.75792 0.89134 0.89194 0.84736 0.84443 0.92325 0.90124 0.89518 0.90501 0.89564 0.94416 0.92053 0.92553 0.93210 0.91468 0.93512 0.96479 0.96276 0.78015 0.93574 0.83075 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 19.25 29.55 0.57 -0.34 16 2 C -0.20 -1.50 13.73 -37.12 -0.51 -2.01 16 3 C 0.17 1.11 5.21 34.37 0.18 1.29 16 4 O -0.31 -2.73 10.08 -18.85 -0.19 -2.92 16 5 C 0.15 1.33 6.69 -39.02 -0.26 1.07 16 6 C -0.22 -1.87 9.01 -39.50 -0.36 -2.23 16 7 C -0.02 -0.20 9.59 -39.22 -0.38 -0.58 16 8 C -0.16 -1.85 5.48 -104.96 -0.58 -2.43 16 9 C 0.56 7.76 5.69 -12.43 -0.07 7.69 16 10 O -0.53 -9.23 14.88 5.29 0.08 -9.15 16 11 N -0.60 -7.35 2.40 -182.78 -0.44 -7.78 16 12 C 0.05 0.45 7.81 59.85 0.47 0.91 16 13 C 0.13 1.77 4.62 -4.04 -0.02 1.75 16 14 C -0.09 -1.44 0.60 -154.51 -0.09 -1.53 16 15 C -0.12 -2.29 7.04 37.16 0.26 -2.03 16 16 C -0.14 -2.16 7.05 37.16 0.26 -1.90 16 17 C 0.17 3.42 5.15 -4.04 -0.02 3.40 16 18 N -0.73 -18.67 5.00 -59.91 -0.30 -18.97 16 19 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.94 -28.65 13.06 55.49 0.72 -27.92 16 23 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 C -0.06 -0.54 7.43 -39.22 -0.29 -0.83 16 28 C -0.16 -1.32 9.97 -39.50 -0.39 -1.71 16 29 H 0.23 0.46 7.80 -54.08 -0.42 0.04 16 30 H 0.09 0.45 7.64 -51.93 -0.40 0.05 16 31 H 0.09 0.44 7.67 -51.93 -0.40 0.04 16 32 H 0.13 0.82 6.28 -52.49 -0.33 0.49 16 33 H 0.14 1.49 7.94 -52.49 -0.42 1.07 16 34 H 0.06 0.37 7.40 -51.93 -0.38 -0.02 16 35 H 0.08 0.69 5.90 -51.93 -0.31 0.38 16 36 H 0.09 0.66 4.75 -51.93 -0.25 0.41 16 37 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.09 1.33 7.36 -51.93 -0.38 0.95 16 39 H 0.04 0.64 6.21 -51.93 -0.32 0.32 16 40 H 0.06 1.27 6.86 -51.93 -0.36 0.91 16 41 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 42 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 44 H 0.05 0.64 5.93 -51.93 -0.31 0.33 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.38 10.34 5.36 -40.82 -0.22 10.12 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.15 0.99 4.73 -52.49 -0.25 0.74 16 50 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -35.11 399.29 -7.76 -42.87 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.15 Total: 6.99 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.47 Total: -6.92 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.01 Total: -54.68 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.11 Total: -12.07 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.11 -7.76 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329341497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.190 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds