Wall clock time and date at job start Wed Apr 1 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00056 * 2 1 4 4 C 1.52999 * 109.47155 * 125.00139 * 3 2 1 5 5 H 1.08998 * 109.47087 * 304.99949 * 4 3 2 6 6 C 1.50702 * 109.47221 * 184.99937 * 4 3 2 7 7 O 1.21280 * 120.00059 * 239.99531 * 6 4 3 8 8 N 1.34775 * 119.99859 * 60.00093 * 6 4 3 9 9 C 1.46501 * 119.99936 * 183.44425 * 8 6 4 10 10 C 1.52998 * 113.27923 * 306.25298 * 9 8 6 11 11 C 1.52998 * 109.47189 * 292.16368 * 10 9 8 12 12 O 1.42900 * 109.47289 * 184.80649 * 11 10 9 13 13 C 1.53499 * 114.20362 * 173.18916 * 9 8 6 14 14 N 1.47070 * 87.98163 * 220.14641 * 13 9 8 15 15 C 1.36943 * 136.05568 * 207.08780 * 14 13 9 16 16 H 1.07999 * 119.99536 * 354.41646 * 15 14 13 17 17 C 1.38813 * 119.99881 * 174.41814 * 15 14 13 18 18 N 1.31610 * 119.99701 * 182.14564 * 17 15 14 19 19 Si 1.86801 * 119.99931 * 2.41559 * 17 15 14 20 20 H 1.48498 * 109.47105 * 173.50337 * 19 17 15 21 21 H 1.48494 * 109.47321 * 293.50744 * 19 17 15 22 22 H 1.48505 * 109.46923 * 53.50688 * 19 17 15 23 23 C 1.47066 * 87.88832 * 27.34020 * 14 13 9 24 24 C 1.50701 * 109.47300 * 64.99973 * 4 3 2 25 25 C 1.38232 * 120.00022 * 59.72398 * 24 4 3 26 26 C 1.38236 * 119.99903 * 179.78534 * 25 24 4 27 27 C 1.38236 * 120.00314 * 0.45053 * 26 25 24 28 28 C 1.38234 * 119.99779 * 359.80426 * 27 26 25 29 29 C 1.38241 * 120.00096 * 359.97438 * 28 27 26 30 30 H 1.07995 * 119.99520 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99766 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99900 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47109 * 5.00145 * 3 2 1 34 34 H 1.08998 * 109.46760 * 244.99983 * 3 2 1 35 35 H 0.97002 * 120.00146 * 3.43852 * 8 6 4 36 36 H 1.09000 * 109.47171 * 52.16700 * 10 9 8 37 37 H 1.09001 * 109.47005 * 172.17029 * 10 9 8 38 38 H 1.08996 * 109.47349 * 304.80871 * 11 10 9 39 39 H 1.09003 * 109.46983 * 64.80968 * 11 10 9 40 40 H 0.96700 * 114.00245 * 179.97438 * 12 11 10 41 41 H 1.08999 * 113.46569 * 105.37154 * 13 9 8 42 42 H 1.08994 * 113.52284 * 334.93039 * 13 9 8 43 43 H 0.97003 * 120.00422 * 5.29000 * 18 17 15 44 44 H 1.09002 * 113.46587 * 87.43332 * 23 14 13 45 45 H 1.08990 * 113.46963 * 217.87651 * 23 14 13 46 46 H 1.08002 * 119.99867 * 0.02562 * 25 24 4 47 47 H 1.08003 * 120.00097 * 180.27694 * 26 25 24 48 48 H 1.07993 * 119.99976 * 179.83042 * 27 26 25 49 49 H 1.07999 * 120.00384 * 180.02562 * 28 27 26 50 50 H 1.07995 * 120.00216 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1469 2.1060 6 6 3.6991 2.6839 1.2541 7 8 4.9053 2.7724 1.1632 8 7 2.9526 3.7937 1.4201 9 6 3.5900 5.1128 1.4150 10 6 4.7422 5.2314 2.4145 11 6 4.1891 5.1729 3.8398 12 8 5.2492 5.3956 4.7717 13 6 2.6037 6.2885 1.4490 14 7 3.4739 6.9788 0.4850 15 6 3.7528 8.2807 0.1648 16 1 3.1985 9.0819 0.6307 17 6 4.7480 8.5704 -0.7586 18 7 5.0449 9.8224 -1.0349 19 14 5.6605 7.1832 -1.6144 20 1 6.5537 7.7479 -2.6578 21 1 6.4715 6.4363 -0.6197 22 1 4.6815 6.2625 -2.2464 23 6 3.9079 5.6556 0.0120 24 6 4.0839 0.2671 0.9949 25 6 4.9035 0.2913 -0.1180 26 6 5.8685 -0.6839 -0.2870 27 6 6.0078 -1.6886 0.6522 28 6 5.1848 -1.7158 1.7625 29 6 4.2227 -0.7379 1.9339 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4025 -0.9314 35 1 1.9933 3.7191 1.5428 36 1 5.4416 4.4094 2.2621 37 1 5.2579 6.1799 2.2636 38 1 3.4271 5.9421 3.9657 39 1 3.7483 4.1921 4.0185 40 1 4.9705 5.3728 5.6974 41 1 2.5516 6.7835 2.4187 42 1 1.6204 6.0431 1.0477 43 1 4.6236 10.5417 -0.5389 44 1 3.2687 5.2425 -0.7683 45 1 4.9668 5.6115 -0.2425 46 1 4.7924 1.0743 -0.8535 47 1 6.5118 -0.6625 -1.1542 48 1 6.7600 -2.4520 0.5188 49 1 5.2938 -2.5004 2.4965 50 1 3.5794 -0.7594 2.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329718078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:48 Heat of formation + Delta-G solvation = 23.985866 kcal Electronic energy + Delta-G solvation = -31164.138811 eV Core-core repulsion = 27159.069526 eV Total energy + Delta-G solvation = -4005.069285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.72148 -39.50868 -38.03232 -36.54025 -35.88978 -33.83257 -32.57431 -32.12485 -30.96196 -30.60931 -28.87489 -27.27302 -25.69763 -24.97475 -23.27954 -22.68057 -22.29322 -21.26554 -20.06022 -19.67843 -19.00613 -17.52937 -17.30660 -17.09315 -16.92024 -16.02590 -15.98367 -15.38295 -15.21234 -14.78193 -14.70205 -14.36713 -14.09783 -13.92176 -13.74164 -13.52114 -13.39201 -13.14933 -13.10898 -12.73322 -12.28994 -12.14160 -11.95105 -11.92391 -11.76153 -11.57275 -11.39194 -11.14317 -11.06940 -11.00594 -10.84420 -10.48362 -10.32750 -9.87796 -9.64912 -9.46186 -9.27112 -9.13345 -8.95867 -8.90373 -8.75517 -8.65199 -7.21595 -6.33041 -3.28226 1.26399 1.37726 2.00182 2.74679 3.20547 3.45488 3.49889 3.67574 3.78618 4.28156 4.32118 4.51596 4.58993 4.70145 4.75642 4.84019 4.90467 4.92424 4.98224 5.06949 5.07835 5.13861 5.36499 5.37112 5.39751 5.46826 5.48461 5.52163 5.62071 5.68617 5.70736 5.73251 5.91102 5.93537 5.98910 6.06565 6.22900 6.26123 6.32315 6.37077 6.37986 6.46547 6.48365 6.54585 6.55606 6.71666 6.93491 6.97394 7.01156 7.66056 7.79045 8.19981 8.38069 8.93802 9.45433 10.28197 11.18361 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.003479 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.385201 B = 8046.336166 C = 8211.107047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C -0.084 4.084 4 C -0.064 4.064 5 H 0.103 0.897 6 C 0.516 3.484 7 O -0.517 6.517 8 N -0.715 5.715 9 C 0.136 3.864 10 C -0.106 4.106 11 C 0.085 3.915 12 O -0.571 6.571 13 C 0.122 3.878 14 N -0.617 5.617 15 C -0.304 4.304 16 H 0.084 0.916 17 C -0.018 4.018 18 N -0.931 5.931 19 Si 1.068 2.932 20 H -0.295 1.295 21 H -0.287 1.287 22 H -0.291 1.291 23 C 0.097 3.903 24 C -0.060 4.060 25 C -0.083 4.083 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.113 4.113 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.397 0.603 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.372 0.628 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 -24.510 7.459 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.164 4.164 3 C -0.122 4.122 4 C -0.085 4.085 5 H 0.121 0.879 6 C 0.301 3.699 7 O -0.392 6.392 8 N -0.367 5.367 9 C 0.049 3.951 10 C -0.145 4.145 11 C 0.008 3.992 12 O -0.376 6.376 13 C -0.005 4.005 14 N -0.345 5.345 15 C -0.430 4.430 16 H 0.102 0.898 17 C -0.217 4.217 18 N -0.573 5.573 19 Si 0.901 3.099 20 H -0.222 1.222 21 H -0.216 1.216 22 H -0.218 1.218 23 C -0.029 4.029 24 C -0.061 4.061 25 C -0.101 4.101 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.143 4.143 29 C -0.131 4.131 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.218 0.782 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.634 -24.401 5.589 25.659 hybrid contribution -2.201 0.234 1.703 2.793 sum -7.835 -24.167 7.292 26.431 Atomic orbital electron populations 1.23868 0.95839 1.01917 1.01472 1.22875 0.95798 0.98243 0.99519 1.20791 0.97317 0.96339 0.97722 1.20341 0.95530 0.91638 1.01036 0.87917 1.20378 0.87713 0.85331 0.76492 1.90712 1.13966 1.86470 1.48056 1.46013 1.10780 1.05813 1.74103 1.22429 0.95077 0.80130 0.97463 1.21441 0.97251 1.05571 0.90189 1.22096 0.89114 0.98179 0.89831 1.86532 1.36840 1.95516 1.18688 1.22632 0.93349 0.89691 0.94821 1.45743 1.48581 1.00405 1.39771 1.20107 1.17861 0.79062 1.25961 0.89784 1.25656 0.96471 1.01510 0.98072 1.70923 1.45849 0.98125 1.42404 0.83745 0.76323 0.73703 0.76177 1.22195 1.21555 1.21788 1.23156 0.99818 0.86335 0.93621 1.19227 0.96654 0.94949 0.95226 1.20946 0.94514 0.97415 0.97201 1.21124 0.98340 0.94935 0.99483 1.21115 0.99358 0.98746 0.94780 1.21035 0.96279 0.99026 0.97994 1.20960 0.98825 0.94834 0.98476 0.88457 0.88533 0.87184 0.90396 0.89938 0.76840 0.88667 0.89118 0.93768 0.94642 0.78215 0.92807 0.94102 0.92838 0.93739 0.92261 0.86202 0.86182 0.86406 0.86339 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 14.32 29.01 0.42 -0.96 16 2 C -0.15 -1.16 9.09 -36.03 -0.33 -1.49 16 3 C -0.08 -0.74 4.97 -27.88 -0.14 -0.88 16 4 C -0.06 -0.65 2.37 -92.92 -0.22 -0.87 16 5 H 0.10 0.84 7.88 -51.93 -0.41 0.43 16 6 C 0.52 7.12 6.82 -10.99 -0.07 7.04 16 7 O -0.52 -9.33 12.89 5.56 0.07 -9.26 16 8 N -0.72 -9.37 5.07 -47.30 -0.24 -9.61 16 9 C 0.14 2.37 0.82 -131.57 -0.11 2.26 16 10 C -0.11 -2.00 4.91 -26.73 -0.13 -2.13 16 11 C 0.09 1.30 6.89 37.16 0.26 1.55 16 12 O -0.57 -8.85 13.66 -35.23 -0.48 -9.33 16 13 C 0.12 2.26 7.81 -8.49 -0.07 2.19 16 14 N -0.62 -14.95 3.46 -184.54 -0.64 -15.59 16 15 C -0.30 -8.72 11.09 -15.06 -0.17 -8.88 16 16 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 17 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 18 N -0.93 -29.61 13.70 55.49 0.76 -28.85 16 19 Si 1.07 27.97 25.05 -169.99 -4.26 23.71 16 20 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 21 H -0.29 -7.38 6.51 56.52 0.37 -7.01 16 22 H -0.29 -7.15 6.53 56.52 0.37 -6.78 16 23 C 0.10 2.12 5.30 -8.36 -0.04 2.07 16 24 C -0.06 -0.68 3.64 -104.62 -0.38 -1.06 16 25 C -0.08 -1.02 7.88 -39.58 -0.31 -1.33 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 29 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 30 H 0.10 0.64 7.84 -52.49 -0.41 0.23 16 31 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.11 0.90 7.77 -52.49 -0.41 0.49 16 33 H 0.08 0.61 7.16 -51.93 -0.37 0.24 16 34 H 0.08 0.81 7.21 -51.93 -0.37 0.44 16 35 H 0.40 3.83 8.15 -40.82 -0.33 3.50 16 36 H 0.10 1.94 5.78 -51.93 -0.30 1.64 16 37 H 0.09 2.03 7.94 -51.93 -0.41 1.61 16 38 H 0.04 0.63 6.63 -51.93 -0.34 0.29 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.37 3.67 9.12 45.56 0.42 4.08 16 41 H 0.05 0.96 6.70 -51.93 -0.35 0.61 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 44 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.06 1.43 3.99 -51.93 -0.21 1.23 16 46 H 0.12 1.54 7.49 -52.49 -0.39 1.15 16 47 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.96 7.95 -52.49 -0.42 0.55 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -36.00 400.14 -8.64 -44.63 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.91 Total: 7.88 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.97 Total: -9.61 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.12 Total: -54.05 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.41 Total: -18.59 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.26 Total: 23.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.00 -8.64 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329718078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.620 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds