Wall clock time and date at job start Wed Apr 1 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46768 * 2 1 4 4 C 1.53000 * 109.46808 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46898 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99901 * 269.99651 * 5 4 3 7 7 C 1.34773 * 120.00279 * 90.00053 * 5 4 3 8 8 O 1.21357 * 119.99874 * 5.02941 * 7 5 4 9 9 C 1.49452 * 119.99987 * 185.03592 * 7 5 4 10 10 O 1.21345 * 119.99426 * 274.12694 * 9 7 5 11 11 N 1.34773 * 120.00132 * 94.13675 * 9 7 5 12 12 C 1.47247 * 121.35541 * 175.29214 * 11 9 7 13 13 C 1.52788 * 107.83925 * 115.89149 * 12 11 9 14 14 C 1.50568 * 110.84378 * 47.34774 * 13 12 11 15 15 C 1.41489 * 117.58309 * 160.32836 * 14 13 12 16 16 C 1.41387 * 119.97749 * 359.00961 * 15 14 13 17 17 H 1.08003 * 120.00276 * 33.03148 * 16 15 14 18 18 C 1.39952 * 120.00192 * 213.02235 * 16 15 14 19 19 N 1.30827 * 119.99218 * 6.77368 * 18 16 15 20 20 Si 1.86793 * 120.00330 * 186.77056 * 18 16 15 21 21 H 1.48500 * 109.46971 * 60.00103 * 20 18 16 22 22 H 1.48500 * 109.47336 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47261 * 300.00307 * 20 18 16 24 24 C 1.40412 * 120.05177 * 179.05119 * 15 14 13 25 25 C 1.37638 * 119.54364 * 0.26835 * 24 15 14 26 26 C 1.38332 * 119.98727 * 0.16761 * 25 24 15 27 27 C 1.36991 * 123.05574 * 340.10816 * 14 13 12 28 28 C 1.46668 * 121.35425 * 355.30501 * 11 9 7 29 29 H 1.09002 * 109.47480 * 299.99560 * 1 2 3 30 30 H 1.08999 * 109.47316 * 60.00094 * 1 2 3 31 31 H 1.09006 * 109.46742 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47338 * 240.00152 * 2 1 3 33 33 H 1.08999 * 109.47316 * 119.99906 * 2 1 3 34 34 H 1.08995 * 109.47158 * 60.00533 * 3 2 1 35 35 H 1.08999 * 109.47125 * 300.00023 * 3 2 1 36 36 H 1.08994 * 109.47592 * 59.99972 * 4 3 2 37 37 H 1.09006 * 109.47357 * 299.99652 * 4 3 2 38 38 H 1.08997 * 109.47292 * 264.86688 * 6 5 4 39 39 H 1.09004 * 109.47224 * 24.86149 * 6 5 4 40 40 H 1.08997 * 109.47319 * 144.86186 * 6 5 4 41 41 H 1.08996 * 109.78650 * 356.30211 * 12 11 9 42 42 H 1.09004 * 109.82958 * 235.49952 * 12 11 9 43 43 H 1.08998 * 109.19799 * 167.68456 * 13 12 11 44 44 H 1.09005 * 109.19444 * 287.01317 * 13 12 11 45 45 H 0.97005 * 119.99552 * 180.02562 * 19 18 16 46 46 H 1.07994 * 120.22443 * 180.28675 * 24 15 14 47 47 H 1.08001 * 120.00752 * 180.15092 * 25 24 15 48 48 H 1.08002 * 119.47520 * 179.86985 * 26 25 24 49 49 H 1.08994 * 109.43436 * 344.33898 * 28 11 9 50 50 H 1.09002 * 109.42915 * 104.19635 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.3018 3.5152 -1.2684 7 6 4.2833 3.4586 1.1674 8 8 4.1695 2.8585 2.2161 9 6 4.6728 4.9014 1.1705 10 8 5.8387 5.2152 1.0496 11 7 3.7293 5.8539 1.3078 12 6 4.0881 7.2777 1.4177 13 6 3.5171 7.9998 0.1983 14 6 2.0807 7.6107 -0.0308 15 6 1.2867 8.4730 -0.8232 16 6 1.8436 9.6611 -1.3496 17 1 2.8860 9.6906 -1.6310 18 6 1.0442 10.7991 -1.5064 19 7 -0.1800 10.8069 -1.0451 20 14 1.7251 12.3067 -2.3740 21 1 2.1124 11.9465 -3.7616 22 1 0.6872 13.3681 -2.4100 23 1 2.9169 12.8037 -1.6407 24 6 -0.0542 8.1501 -1.0865 25 6 -0.5891 6.9944 -0.5643 26 6 0.1924 6.1622 0.2168 27 6 1.5238 6.4709 0.4862 28 6 2.3032 5.5143 1.3541 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9329 0.9289 -0.8908 37 1 3.9337 0.9287 0.8892 38 1 5.3538 3.4206 -1.5376 39 1 3.6856 3.0696 -2.0494 40 1 4.0473 4.5697 -1.1622 41 1 5.1727 7.3846 1.4354 42 1 3.6611 7.6975 2.3285 43 1 3.5755 9.0762 0.3593 44 1 4.1043 7.7367 -0.6816 45 1 -0.7343 11.5955 -1.1540 46 1 -0.6614 8.8039 -1.6948 47 1 -1.6189 6.7376 -0.7641 48 1 -0.2364 5.2585 0.6241 49 1 2.1607 4.4967 0.9906 50 1 1.9469 5.5848 2.3818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329909786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:29 Heat of formation + Delta-G solvation = -59.906737 kcal Electronic energy + Delta-G solvation = -31170.984062 eV Core-core repulsion = 27162.276920 eV Total energy + Delta-G solvation = -4008.707142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.85371 -39.07623 -37.97882 -36.47020 -35.67559 -34.59564 -33.72514 -32.13341 -30.29664 -29.82041 -28.98349 -26.96253 -25.90059 -25.21922 -24.66561 -23.22640 -21.89800 -21.23395 -20.67988 -19.69786 -18.44151 -17.41400 -17.23845 -16.83241 -16.36251 -15.60434 -15.53390 -15.21056 -14.99586 -14.89454 -14.42849 -13.90014 -13.79017 -13.60800 -13.48706 -13.29343 -13.18408 -13.05394 -12.69644 -12.62509 -12.51943 -12.43186 -11.93991 -11.66438 -11.57529 -11.53681 -11.43434 -11.35213 -11.25333 -11.19581 -11.11216 -10.95531 -10.74425 -10.56489 -10.28493 -9.84156 -9.43338 -9.42990 -9.25710 -8.90951 -8.49701 -7.40511 -7.33571 -6.77048 -4.49087 2.10753 2.22879 2.68442 2.70974 2.75933 3.02769 3.05242 3.11827 3.36371 3.88396 4.22183 4.54086 4.67440 4.71097 4.87874 5.01317 5.05540 5.20406 5.29555 5.37101 5.39826 5.48074 5.53543 5.59252 5.60325 5.62917 5.66331 5.74384 5.74726 5.82300 5.85936 5.96607 6.03749 6.12784 6.16635 6.25577 6.26930 6.31128 6.58389 6.69478 6.76281 6.97928 7.00604 7.07028 7.22416 7.38013 7.49318 7.72751 7.75796 7.89650 7.94345 7.97719 8.14959 8.51651 8.79501 8.84292 10.17407 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003340 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.737092 B = 8380.669650 C = 9668.609985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.138 4.138 4 C 0.113 3.887 5 N -0.602 5.602 6 C 0.073 3.927 7 C 0.521 3.479 8 O -0.515 6.515 9 C 0.517 3.483 10 O -0.525 6.525 11 N -0.584 5.584 12 C 0.111 3.889 13 C -0.068 4.068 14 C -0.166 4.166 15 C 0.113 3.887 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.804 5.804 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.151 4.151 25 C -0.106 4.106 26 C -0.225 4.225 27 C -0.082 4.082 28 C 0.157 3.843 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.280 0.720 46 H 0.118 0.882 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 -13.242 -0.893 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.177 4.177 4 C -0.009 4.009 5 N -0.336 5.336 6 C -0.069 4.069 7 C 0.303 3.697 8 O -0.390 6.390 9 C 0.299 3.701 10 O -0.401 6.401 11 N -0.317 5.317 12 C -0.010 4.010 13 C -0.106 4.106 14 C -0.167 4.167 15 C 0.110 3.890 16 C -0.494 4.494 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.430 5.430 20 Si 0.734 3.266 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.170 4.170 25 C -0.124 4.124 26 C -0.245 4.245 27 C -0.083 4.083 28 C 0.034 3.966 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.826 -13.223 -0.367 13.527 hybrid contribution -0.060 0.825 -0.407 0.921 sum 2.767 -12.398 -0.774 12.727 Atomic orbital electron populations 1.21760 0.95527 1.01499 1.02215 1.21425 0.96241 0.96076 1.01994 1.22019 0.94887 0.97554 1.03239 1.21625 0.94318 0.81368 1.03597 1.47863 1.64894 1.14711 1.06154 1.21940 1.01904 0.98341 0.84752 1.20364 0.76817 0.88158 0.84322 1.90771 1.50320 1.66843 1.31051 1.20012 0.86195 0.86088 0.77768 1.90767 1.17784 1.81663 1.49888 1.48110 1.06722 1.07349 1.69542 1.21877 1.01284 0.78067 0.99776 1.20443 0.93846 1.00492 0.95817 1.19300 0.95450 0.97677 1.04323 1.17602 0.91531 0.91156 0.88681 1.19499 0.97323 0.94909 1.37636 0.90412 1.25857 0.94408 1.00471 0.93478 1.69767 1.07782 1.30170 1.35292 0.86339 0.79444 0.80186 0.80596 1.18966 1.20412 1.18995 1.21297 0.96954 0.95879 1.02890 1.20608 0.97466 0.95651 0.98681 1.20174 0.93875 1.01684 1.08726 1.18979 0.94156 0.95343 0.99785 1.20533 0.78193 0.98041 0.99811 0.92566 0.92563 0.92824 0.91970 0.91856 0.91320 0.91256 0.90066 0.89545 0.91767 0.89953 0.90553 0.89232 0.90685 0.89609 0.92406 0.90913 0.86398 0.89206 0.89434 0.90599 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.14 -1.36 5.54 -26.73 -0.15 -1.51 16 4 C 0.11 1.15 5.42 -4.04 -0.02 1.13 16 5 N -0.60 -7.72 2.87 -182.08 -0.52 -8.24 16 6 C 0.07 0.83 10.23 59.85 0.61 1.44 16 7 C 0.52 8.45 5.61 -11.59 -0.06 8.39 16 8 O -0.52 -9.41 16.65 5.49 0.09 -9.32 16 9 C 0.52 9.11 5.72 -11.59 -0.07 9.04 16 10 O -0.52 -10.30 16.60 5.50 0.09 -10.20 16 11 N -0.58 -10.03 2.93 -174.87 -0.51 -10.55 16 12 C 0.11 1.88 6.44 -3.74 -0.02 1.85 16 13 C -0.07 -1.30 4.98 -28.06 -0.14 -1.44 16 14 C -0.17 -3.58 5.82 -103.90 -0.60 -4.19 16 15 C 0.11 2.73 5.53 -106.64 -0.59 2.14 16 16 C -0.46 -11.27 7.84 -37.74 -0.30 -11.56 16 17 H 0.08 1.81 7.12 -52.48 -0.37 1.44 16 18 C 0.07 1.76 5.29 -17.34 -0.09 1.67 16 19 N -0.80 -19.81 10.92 55.55 0.61 -19.21 16 20 Si 0.91 17.91 29.56 -169.99 -5.03 12.89 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.15 -3.63 8.60 -38.98 -0.34 -3.96 16 25 C -0.11 -2.27 10.03 -39.77 -0.40 -2.67 16 26 C -0.22 -4.51 9.63 -39.15 -0.38 -4.88 16 27 C -0.08 -1.63 5.81 -104.60 -0.61 -2.24 16 28 C 0.16 2.65 6.04 -5.03 -0.03 2.62 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.09 0.96 7.36 -51.93 -0.38 0.58 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.08 1.03 6.99 -51.93 -0.36 0.66 16 41 H 0.09 1.46 7.10 -51.93 -0.37 1.09 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.66 7.15 -51.93 -0.37 1.29 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 46 H 0.12 2.98 6.40 -52.49 -0.34 2.64 16 47 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 48 H 0.09 1.55 8.05 -52.49 -0.42 1.13 16 49 H 0.08 1.21 6.62 -51.93 -0.34 0.86 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -28.31 404.04 -10.16 -38.47 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.00 Total: 6.23 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.97 Total: -6.16 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.43 Total: -38.00 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.52 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.31 -10.16 -38.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329909786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.435 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds