Wall clock time and date at job start Wed Apr 1 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47358 * 125.66784 * 3 2 1 5 5 C 1.35704 * 117.00243 * 179.97438 * 4 3 2 6 6 C 1.38994 * 119.91552 * 179.97438 * 5 4 3 7 7 C 1.37701 * 120.09177 * 180.02562 * 6 5 4 8 8 C 1.39730 * 119.91152 * 0.02562 * 7 6 5 9 9 C 1.47603 * 120.08970 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99770 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00446 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00230 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47092 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47150 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.47352 * 305.00326 * 14 13 12 16 16 N 1.46506 * 109.47091 * 64.99957 * 14 13 12 17 17 C 1.36939 * 120.00073 * 204.72442 * 16 14 13 18 18 H 1.08004 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.38805 * 119.99849 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00455 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00168 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47227 * 89.99498 * 21 19 17 23 23 H 1.48496 * 109.47434 * 209.99930 * 21 19 17 24 24 H 1.48507 * 109.46769 * 330.00032 * 21 19 17 25 25 C 1.52995 * 109.47197 * 185.00058 * 14 13 12 26 26 C 1.52996 * 109.46992 * 60.00301 * 25 14 13 27 27 C 1.52999 * 109.47197 * 179.97438 * 25 14 13 28 28 C 1.39735 * 119.82378 * 0.26652 * 8 7 6 29 29 C 1.37704 * 119.90828 * 359.47927 * 28 8 7 30 30 H 4.38447 * 5.44416 * 179.97438 * 4 1 2 31 31 H 1.09002 * 109.47497 * 5.66341 * 3 2 1 32 32 H 1.09001 * 109.47223 * 245.66654 * 3 2 1 33 33 H 1.07999 * 119.95122 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.04336 * 179.97438 * 7 6 5 35 35 H 0.97005 * 119.99401 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.47104 * 60.00513 * 12 11 9 37 37 H 1.09000 * 109.47564 * 300.00315 * 12 11 9 38 38 H 1.08996 * 109.46681 * 60.00306 * 13 12 11 39 39 H 1.09004 * 109.47038 * 300.00156 * 13 12 11 40 40 H 0.97005 * 119.99811 * 25.00235 * 16 14 13 41 41 H 0.97000 * 120.00679 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.47379 * 300.00069 * 25 14 13 43 43 H 1.09001 * 109.47741 * 59.99690 * 26 25 14 44 44 H 1.09008 * 109.47401 * 180.02562 * 26 25 14 45 45 H 1.08997 * 109.47320 * 299.99619 * 26 25 14 46 46 H 1.09002 * 109.47121 * 60.00047 * 27 25 14 47 47 H 1.09005 * 109.47224 * 179.97438 * 27 25 14 48 48 H 1.09005 * 109.47352 * 300.00268 * 27 25 14 49 49 H 1.08002 * 120.04137 * 179.70318 * 28 8 7 50 50 H 1.07998 * 119.95184 * 180.24774 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1220 0.7865 -1.0946 5 6 4.4673 0.8912 -1.2387 6 6 4.9963 1.6404 -2.2831 7 6 6.3608 1.7487 -2.4331 8 6 7.2140 1.1036 -1.5339 9 6 8.6773 1.2175 -1.6906 10 8 9.1417 1.8729 -2.6034 11 7 9.4986 0.5951 -0.8221 12 6 10.9508 0.7077 -0.9780 13 6 11.6458 -0.0859 0.1303 14 6 13.1625 0.0322 -0.0322 15 1 13.4461 -0.2836 -1.0362 16 7 13.5689 1.4245 0.1748 17 6 14.7270 1.8906 -0.3880 18 1 15.3406 1.2320 -0.9847 19 6 15.1123 3.2096 -0.1914 20 7 14.3643 4.0124 0.5355 21 14 16.6917 3.8457 -0.9596 22 1 16.4005 4.3923 -2.3093 23 1 17.2618 4.9172 -0.1040 24 1 17.6684 2.7332 -1.0763 25 6 13.8569 -0.8603 0.9984 26 6 13.4325 -2.3143 0.7821 27 6 15.3736 -0.7427 0.8355 28 6 6.6783 0.3464 -0.4889 29 6 5.3126 0.2474 -0.3426 30 1 -1.0501 -0.0003 0.0001 31 1 3.0098 -1.0218 -0.1014 32 1 3.0091 0.4243 0.9364 33 1 4.3362 2.1376 -2.9784 34 1 6.7711 2.3307 -3.2451 35 1 9.1280 0.0726 -0.0936 36 1 11.2432 1.7557 -0.9119 37 1 11.2440 0.3092 -1.9493 38 1 11.3535 -1.1339 0.0647 39 1 11.3526 0.3131 1.1014 40 1 13.0197 2.0150 0.7139 41 1 14.6336 4.9340 0.6732 42 1 13.5734 -0.5446 2.0023 43 1 13.7160 -2.6301 -0.2219 44 1 13.9269 -2.9502 1.5166 45 1 12.3520 -2.3985 0.8979 46 1 15.6763 0.2931 0.9892 47 1 15.8683 -1.3783 1.5700 48 1 15.6569 -1.0588 -0.1686 49 1 7.3344 -0.1576 0.2053 50 1 4.8978 -0.3345 0.4672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331224240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:20 Heat of formation + Delta-G solvation = 10.124470 kcal Electronic energy + Delta-G solvation = -28639.789090 eV Core-core repulsion = 24634.118730 eV Total energy + Delta-G solvation = -4005.670361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.74677 -39.55343 -37.68187 -37.20128 -34.72981 -33.97368 -33.03234 -31.77428 -31.11991 -30.43467 -29.32181 -28.03446 -26.35375 -25.32459 -23.63984 -23.12672 -22.56983 -21.10719 -20.49388 -19.18728 -18.98643 -18.83496 -17.64720 -17.07555 -16.56398 -16.51151 -15.48844 -15.35593 -15.21201 -14.84780 -14.49538 -14.20523 -13.96071 -13.82018 -13.79328 -13.50308 -13.38174 -13.32785 -13.03431 -12.71037 -12.53685 -11.99898 -11.88095 -11.65145 -11.61746 -11.49910 -11.18065 -11.00654 -10.89660 -10.74418 -10.71250 -10.57598 -10.43072 -10.26258 -10.02712 -9.98158 -9.67913 -9.42732 -9.40693 -8.88426 -8.79446 -8.53422 -6.90487 -5.72250 -2.99819 0.68141 1.00650 1.74178 2.20481 2.83106 3.08804 3.31657 3.47098 3.52464 3.53732 3.71678 3.81507 4.29786 4.46903 4.56717 4.63096 4.67378 4.72837 4.92716 5.08412 5.22544 5.28729 5.31001 5.38165 5.49835 5.56249 5.62133 5.71062 5.72621 5.78532 5.89359 5.92866 6.02870 6.11687 6.18201 6.25146 6.28258 6.31846 6.40640 6.44758 6.57424 6.67980 6.72028 6.75441 6.84382 6.88249 6.95909 7.13982 7.34898 7.65889 7.75786 8.37838 8.45881 9.57411 10.14100 10.48821 11.50177 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.001877 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.867836 B =14914.661690 C =16068.038514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.150 3.850 6 C -0.157 4.157 7 C -0.020 4.020 8 C -0.165 4.165 9 C 0.554 3.446 10 O -0.535 6.535 11 N -0.724 5.724 12 C 0.122 3.878 13 C -0.136 4.136 14 C 0.186 3.814 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.232 4.232 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.901 3.099 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.282 1.282 25 C -0.111 4.111 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.044 4.044 29 C -0.218 4.218 30 H 0.225 0.775 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.394 0.606 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.028 0.972 48 H 0.040 0.960 49 H 0.131 0.869 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.167 -12.924 1.353 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.203 4.203 3 C 0.097 3.903 4 O -0.221 6.221 5 C 0.104 3.896 6 C -0.175 4.175 7 C -0.038 4.038 8 C -0.168 4.168 9 C 0.341 3.659 10 O -0.412 6.412 11 N -0.375 5.375 12 C 0.000 4.000 13 C -0.175 4.175 14 C 0.075 3.925 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.363 4.363 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.133 4.133 26 C -0.204 4.204 27 C -0.198 4.198 28 C -0.063 4.063 29 C -0.236 4.236 30 H 0.242 0.758 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.228 0.772 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.149 0.851 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.777 -12.321 0.483 26.784 hybrid contribution 0.419 0.164 0.472 0.652 sum -23.359 -12.157 0.955 26.350 Atomic orbital electron populations 1.25058 0.95909 0.98744 0.97493 1.22233 0.93525 1.01991 1.02582 1.19320 0.85059 0.96164 0.89715 1.86076 1.19539 1.67895 1.48633 1.19188 0.81550 0.94438 0.94421 1.20414 0.95051 1.02986 0.99076 1.21137 0.91337 0.94434 0.96939 1.19994 0.93630 1.03941 0.99229 1.18114 0.85942 0.79551 0.82271 1.90815 1.77345 1.40524 1.32565 1.46027 1.07880 1.52511 1.31113 1.21478 0.76656 1.02912 0.98978 1.22134 0.97806 0.99252 0.98263 1.20181 0.89238 0.86718 0.96376 0.93297 1.42441 1.26597 1.05788 1.61329 1.19192 0.98687 0.94000 1.24392 0.91023 1.24708 0.98850 0.96558 1.00816 1.69649 1.38792 1.05919 1.43613 0.86277 0.83379 0.78459 0.78623 1.21790 1.21945 1.20810 1.21778 0.96982 0.93876 1.00637 1.21936 1.00258 0.97379 1.00863 1.21834 0.94925 1.03698 0.99304 1.21108 0.94583 0.95052 0.95581 1.21150 0.94090 1.06162 1.02230 0.75801 0.89219 0.89173 0.84414 0.83671 0.77182 0.89588 0.91747 0.91560 0.91665 0.78313 0.93618 0.92216 0.93278 0.93856 0.93246 0.89475 0.95257 0.94127 0.85110 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 19.25 29.55 0.57 -0.34 16 2 C -0.20 -1.49 13.73 -37.12 -0.51 -2.00 16 3 C 0.17 1.08 5.21 34.37 0.18 1.26 16 4 O -0.31 -2.80 10.08 -18.82 -0.19 -2.99 16 5 C 0.15 1.39 6.70 -39.02 -0.26 1.13 16 6 C -0.16 -1.54 9.97 -39.50 -0.39 -1.93 16 7 C -0.02 -0.22 9.58 -39.22 -0.38 -0.60 16 8 C -0.16 -1.98 5.87 -104.96 -0.62 -2.59 16 9 C 0.55 8.51 7.76 -12.44 -0.10 8.41 16 10 O -0.53 -10.57 16.34 5.29 0.09 -10.49 16 11 N -0.72 -9.79 5.51 -61.33 -0.34 -10.12 16 12 C 0.12 2.01 5.56 -4.04 -0.02 1.99 16 13 C -0.14 -2.01 4.65 -26.73 -0.12 -2.13 16 14 C 0.19 3.41 2.02 -67.93 -0.14 3.27 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -16.86 4.46 -53.42 -0.24 -17.10 16 17 C -0.23 -6.12 7.56 -15.06 -0.11 -6.23 16 18 H 0.07 1.86 7.37 -52.48 -0.39 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 21 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16 26 C -0.15 -1.95 8.85 37.16 0.33 -1.63 16 27 C -0.14 -2.56 8.25 37.16 0.31 -2.25 16 28 C -0.04 -0.40 9.53 -39.22 -0.37 -0.77 16 29 C -0.22 -1.72 9.01 -39.50 -0.36 -2.08 16 30 H 0.23 0.46 7.80 -54.08 -0.42 0.04 16 31 H 0.09 0.40 7.65 -51.93 -0.40 0.00 16 32 H 0.09 0.42 7.65 -51.93 -0.40 0.02 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 1.68 7.64 -52.48 -0.40 1.28 16 35 H 0.39 3.92 6.49 -40.82 -0.27 3.65 16 36 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.81 6.18 -51.93 -0.32 0.49 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 46 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.13 0.85 6.39 -52.49 -0.34 0.52 16 50 H 0.13 0.67 6.28 -52.49 -0.33 0.34 16 LS Contribution 414.79 15.07 6.25 6.25 Total: -1.00 -33.61 414.79 -8.62 -42.22 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.55 Total: 10.98 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.34 Total: -9.08 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.15 Total: -54.26 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.10 Total: -13.48 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.61 -8.62 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331224240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.348 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds