Wall clock time and date at job start Wed Apr 1 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46631 * 2 1 4 4 C 1.53000 * 109.46890 * 119.99435 * 2 1 3 5 5 N 1.46503 * 109.47390 * 300.00187 * 4 2 1 6 6 C 1.34778 * 119.99706 * 179.72310 * 5 4 2 7 7 O 1.21342 * 120.00253 * 0.27913 * 6 5 4 8 8 C 1.49452 * 119.99691 * 180.27677 * 6 5 4 9 9 O 1.21352 * 119.99966 * 0.02562 * 8 6 5 10 10 N 1.34772 * 120.00047 * 180.02562 * 8 6 5 11 11 C 1.46497 * 120.00183 * 180.02562 * 10 8 6 12 12 C 1.50707 * 109.47083 * 179.97438 * 11 10 8 13 13 C 1.38632 * 119.74902 * 269.72813 * 12 11 10 14 14 C 1.37620 * 120.24285 * 179.72378 * 13 12 11 15 15 C 1.40712 * 119.74781 * 0.56571 * 14 13 12 16 16 C 1.41399 * 120.24750 * 179.68094 * 15 14 13 17 17 H 1.07994 * 120.00023 * 204.41258 * 16 15 14 18 18 C 1.39944 * 119.99577 * 24.41170 * 16 15 14 19 19 N 1.30830 * 120.00250 * 17.84385 * 18 16 15 20 20 Si 1.86799 * 119.99824 * 197.84630 * 18 16 15 21 21 H 1.48504 * 109.47357 * 59.99903 * 20 18 16 22 22 H 1.48503 * 109.47008 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47226 * 299.99792 * 20 18 16 24 24 C 1.40715 * 119.50971 * 359.71224 * 15 14 13 25 25 C 1.37617 * 119.74801 * 359.97438 * 24 15 14 26 26 C 1.52997 * 109.47241 * 239.99922 * 2 1 3 27 27 C 1.52999 * 117.49917 * 128.74656 * 26 2 1 28 28 C 1.53000 * 117.50097 * 60.08385 * 26 2 1 29 29 H 1.08997 * 109.47283 * 300.00305 * 1 2 3 30 30 H 1.08996 * 109.47194 * 60.00377 * 1 2 3 31 31 H 1.09002 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46554 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46876 * 299.99319 * 3 2 1 34 34 H 1.08997 * 109.47536 * 59.99849 * 3 2 1 35 35 H 1.09000 * 109.46782 * 179.97438 * 4 2 1 36 36 H 1.09007 * 109.46970 * 60.00576 * 4 2 1 37 37 H 0.97001 * 119.99599 * 0.02562 * 5 4 2 38 38 H 0.97003 * 119.99636 * 359.97438 * 10 8 6 39 39 H 1.09000 * 109.47144 * 299.99375 * 11 10 8 40 40 H 1.08999 * 109.47201 * 59.99552 * 11 10 8 41 41 H 1.07998 * 119.87582 * 359.97438 * 13 12 11 42 42 H 1.08004 * 120.12564 * 180.27390 * 14 13 12 43 43 H 0.96993 * 120.00144 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.12682 * 179.97438 * 24 15 14 45 45 H 1.07996 * 119.87746 * 180.02562 * 25 24 15 46 46 H 1.08998 * 115.54854 * 274.41548 * 26 2 1 47 47 H 1.08999 * 117.49995 * 359.97438 * 27 26 2 48 48 H 1.08994 * 117.49989 * 145.01599 * 27 26 2 49 49 H 1.08993 * 117.50188 * 214.97888 * 28 26 2 50 50 H 1.09006 * 117.49822 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.5516 -0.0305 2.4455 6 6 1.8726 -0.4942 3.6696 7 8 2.5702 -1.4807 3.7810 8 6 1.3693 0.2068 4.8898 9 8 0.6712 1.1932 4.7783 10 7 1.6906 -0.2565 6.1139 11 6 1.1968 0.4303 7.3100 12 6 1.6947 -0.2832 8.5405 13 6 0.9372 -1.3009 9.0995 14 6 1.3848 -1.9630 10.2198 15 6 2.6107 -1.5956 10.8047 16 6 3.0775 -2.2644 11.9599 17 1 3.7673 -1.7704 12.6281 18 6 2.6456 -3.5663 12.2371 19 7 2.1075 -4.2924 11.2911 20 14 2.8372 -4.2673 13.9579 21 1 2.0832 -3.4262 14.9220 22 1 2.3066 -5.6540 13.9894 23 1 4.2747 -4.2793 14.3303 24 6 3.3684 -0.5573 10.2321 25 6 2.9044 0.0867 9.1079 26 6 2.0400 -0.7212 -1.2492 27 6 3.0763 0.0039 -2.1100 28 6 1.6374 -0.1484 -2.6096 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 3.1300 -0.7215 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9936 0.7580 2.3564 38 1 2.2483 -1.0452 6.2029 39 1 1.5590 1.4583 7.3142 40 1 0.1068 0.4290 7.3057 41 1 -0.0058 -1.5777 8.6517 42 1 0.7952 -2.7585 10.6511 43 1 1.8078 -5.1946 11.4834 44 1 4.3105 -0.2670 10.6731 45 1 3.4844 0.8836 8.6665 46 1 2.1254 -1.8046 -1.1646 47 1 3.3945 0.9951 -1.7867 48 1 3.8432 -0.6023 -2.5920 49 1 1.4583 -0.8548 -3.4201 50 1 1.0095 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336090734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:28 Heat of formation + Delta-G solvation = -43.502600 kcal Electronic energy + Delta-G solvation = -28706.453437 eV Core-core repulsion = 24698.457633 eV Total energy + Delta-G solvation = -4007.995805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.65871 -39.54596 -38.32925 -37.61707 -35.69342 -34.77831 -33.48285 -32.47816 -30.44057 -29.37983 -27.83851 -27.76750 -26.94918 -24.78651 -23.52433 -22.61973 -22.18026 -21.09911 -20.30927 -20.17682 -19.06766 -18.30320 -17.40365 -16.82579 -16.32032 -15.98765 -15.71103 -15.43992 -15.12944 -14.96142 -14.61464 -14.29690 -14.01298 -13.91648 -13.73160 -13.40904 -13.35803 -12.97350 -12.71677 -12.54311 -12.23162 -12.06268 -12.01886 -11.94000 -11.72391 -11.56001 -11.46254 -11.43389 -11.16010 -11.08481 -11.06030 -10.75296 -10.65225 -10.48932 -10.32481 -9.78994 -9.52587 -9.47072 -9.34573 -9.22298 -8.84381 -7.58732 -7.47183 -6.87812 -4.47785 1.56090 2.33100 2.73062 2.97906 3.01489 3.03205 3.11739 3.36358 3.38253 3.84346 3.87557 4.14537 4.26883 4.42942 4.49699 4.62375 4.72180 4.74450 4.75996 5.00474 5.21881 5.25469 5.34864 5.37172 5.42746 5.54357 5.58027 5.58167 5.60216 5.71684 5.73732 5.80237 5.81515 5.90076 5.94376 6.10996 6.15496 6.22977 6.31502 6.57356 6.85693 6.96441 7.02889 7.16366 7.24859 7.49777 7.54229 7.73966 7.89394 7.94275 7.98943 8.17305 8.20606 8.52433 8.77398 8.85222 10.06011 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.001677 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.073091 B =16692.756508 C =17155.904595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.150 4.150 4 C 0.130 3.870 5 N -0.703 5.703 6 C 0.505 3.495 7 O -0.517 6.517 8 C 0.498 3.502 9 O -0.538 6.538 10 N -0.682 5.682 11 C 0.182 3.818 12 C -0.251 4.251 13 C -0.079 4.079 14 C -0.169 4.169 15 C 0.118 3.882 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.229 4.229 25 C -0.067 4.067 26 C -0.142 4.142 27 C -0.183 4.183 28 C -0.175 4.175 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.414 0.586 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.283 0.717 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 6.317 -22.243 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 C -0.207 4.207 4 C 0.007 3.993 5 N -0.359 5.359 6 C 0.286 3.714 7 O -0.392 6.392 8 C 0.278 3.722 9 O -0.416 6.416 10 N -0.333 5.333 11 C 0.061 3.939 12 C -0.253 4.253 13 C -0.098 4.098 14 C -0.189 4.189 15 C 0.115 3.885 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.410 5.410 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.249 4.249 25 C -0.086 4.086 26 C -0.161 4.161 27 C -0.220 4.220 28 C -0.212 4.212 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.196 6.055 -22.262 23.175 hybrid contribution 0.137 -0.551 0.672 0.880 sum -2.059 5.504 -21.591 22.376 Atomic orbital electron populations 1.21892 0.93539 1.02532 1.02092 1.20293 0.96184 0.95437 0.92627 1.22057 1.01625 0.94810 1.02172 1.21467 0.99620 0.96053 0.82205 1.45806 1.53078 1.32189 1.04780 1.20411 0.81296 0.84789 0.84943 1.90781 1.36366 1.25261 1.86782 1.20085 0.82099 0.85064 0.84987 1.90718 1.37992 1.26026 1.86884 1.46497 1.50608 1.31540 1.04680 1.20126 0.97974 0.94723 0.81029 1.18924 1.00078 1.05601 1.00707 1.20556 0.97595 0.95179 0.96474 1.21306 0.97171 1.02292 0.98096 1.17681 0.90076 0.89719 0.91047 1.19647 1.24004 0.98127 1.06807 0.90233 1.25966 0.92801 0.96987 0.98619 1.69812 1.29007 1.09115 1.33033 0.86328 0.79831 0.78125 0.82269 1.18696 1.20240 1.18898 1.20968 1.00535 1.03872 0.99533 1.20405 0.94535 0.97811 0.95847 1.22193 1.04066 0.99130 0.90701 1.23182 0.92500 1.02617 1.03720 1.22944 0.98212 1.03228 0.96831 0.92286 0.92053 0.92096 0.91764 0.92047 0.92185 0.90756 0.90853 0.75166 0.74963 0.91764 0.91719 0.89324 0.86322 0.90563 0.88823 0.89304 0.87465 0.88017 0.88935 0.88876 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.14 37.16 0.30 -0.64 16 2 C -0.05 -0.30 0.64 -154.51 -0.10 -0.40 16 3 C -0.15 -0.95 6.90 37.16 0.26 -0.69 16 4 C 0.13 1.18 4.55 -4.04 -0.02 1.17 16 5 N -0.70 -7.69 4.95 -60.73 -0.30 -7.99 16 6 C 0.50 7.31 7.89 -11.58 -0.09 7.22 16 7 O -0.52 -8.77 16.48 5.50 0.09 -8.68 16 8 C 0.50 7.96 7.89 -11.59 -0.09 7.86 16 9 O -0.54 -9.23 16.48 5.50 0.09 -9.14 16 10 N -0.68 -11.47 5.54 -61.91 -0.34 -11.81 16 11 C 0.18 3.22 5.79 -5.19 -0.03 3.19 16 12 C -0.25 -5.18 5.27 -104.33 -0.55 -5.73 16 13 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 14 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 15 C 0.12 3.03 5.57 -106.82 -0.60 2.43 16 16 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.69 10.95 55.55 0.61 -19.09 16 20 Si 0.91 18.08 29.60 -169.99 -5.03 13.05 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.23 -5.42 9.80 -38.87 -0.38 -5.80 16 25 C -0.07 -1.43 9.67 -39.66 -0.38 -1.82 16 26 C -0.14 -0.88 5.14 -90.62 -0.47 -1.35 16 27 C -0.18 -1.05 9.57 -26.69 -0.26 -1.30 16 28 C -0.18 -0.95 9.39 -26.69 -0.25 -1.20 16 29 H 0.06 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.06 0.35 7.29 -51.93 -0.38 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 6.97 -51.93 -0.36 0.05 16 33 H 0.06 0.34 7.07 -51.93 -0.37 -0.03 16 34 H 0.06 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.41 4.06 5.63 -40.82 -0.23 3.83 16 38 H 0.41 7.16 7.94 -40.82 -0.32 6.83 16 39 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.06 1.12 8.08 -51.93 -0.42 0.71 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 43 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 44 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 47 H 0.10 0.56 5.85 -51.93 -0.30 0.26 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.48 7.07 -51.93 -0.37 0.12 16 LS Contribution 407.14 15.07 6.14 6.14 Total: -1.00 -27.85 407.14 -10.11 -37.97 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.56 Total: 13.66 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.80 Total: -14.10 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.04 Total: -38.89 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.18 Total: -17.82 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -27.85 -10.11 -37.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336090734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.537 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds