Wall clock time and date at job start Wed Apr 1 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 C 1.53003 * 109.46884 * 239.99810 * 2 1 3 5 5 N 1.46502 * 109.47347 * 119.99963 * 2 1 3 6 6 C 1.46761 * 124.35504 * 179.97438 * 5 2 1 7 7 C 1.54479 * 105.47701 * 197.03732 * 6 5 2 8 8 H 1.09002 * 110.96645 * 216.46408 * 7 6 5 9 9 N 1.46504 * 110.96928 * 92.70162 * 7 6 5 10 10 C 1.34774 * 119.99612 * 161.16653 * 9 7 6 11 11 O 1.21275 * 120.00513 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99581 * 180.02562 * 10 9 7 13 13 H 1.09003 * 109.46711 * 299.99752 * 12 10 9 14 14 C 1.50699 * 109.47278 * 59.99899 * 12 10 9 15 15 H 1.07994 * 120.00024 * 33.92710 * 14 12 10 16 16 C 1.37877 * 119.99543 * 213.92419 * 14 12 10 17 17 N 1.31512 * 120.00355 * 6.39349 * 16 14 12 18 18 Si 1.86806 * 119.99675 * 186.38993 * 16 14 12 19 19 H 1.48497 * 109.46962 * 89.99859 * 18 16 14 20 20 H 1.48502 * 109.47253 * 210.00353 * 18 16 14 21 21 H 1.48503 * 109.46835 * 330.00424 * 18 16 14 22 22 C 1.50702 * 109.46867 * 180.02562 * 12 10 9 23 23 C 1.38239 * 119.99772 * 293.84038 * 22 12 10 24 24 C 1.38231 * 119.99713 * 179.76771 * 23 22 12 25 25 C 1.38237 * 120.00157 * 0.48910 * 24 23 22 26 26 C 1.38235 * 119.99804 * 359.78854 * 25 24 23 27 27 C 1.38234 * 120.00381 * 359.95747 * 26 25 24 28 28 C 1.54627 * 101.76418 * 334.58459 * 7 6 5 29 29 C 1.34426 * 124.34860 * 359.97197 * 5 2 1 30 30 O 1.21281 * 124.93803 * 359.61072 * 29 5 2 31 31 H 1.09001 * 109.47212 * 300.00142 * 1 2 3 32 32 H 1.08995 * 109.47560 * 60.00124 * 1 2 3 33 33 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47236 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46979 * 299.99846 * 3 2 1 36 36 H 1.09001 * 109.47117 * 59.99799 * 3 2 1 37 37 H 1.09002 * 109.46897 * 299.99805 * 4 2 1 38 38 H 1.08991 * 109.47201 * 60.00409 * 4 2 1 39 39 H 1.09003 * 109.47058 * 179.97438 * 4 2 1 40 40 H 1.09005 * 110.24636 * 78.02952 * 6 5 2 41 41 H 1.09009 * 110.24251 * 316.04026 * 6 5 2 42 42 H 0.97001 * 119.99773 * 341.16895 * 9 7 6 43 43 H 0.97003 * 119.99972 * 179.97438 * 17 16 14 44 44 H 1.07997 * 119.99939 * 0.02562 * 23 22 12 45 45 H 1.07998 * 119.99872 * 180.25277 * 24 23 22 46 46 H 1.08001 * 120.00091 * 179.76651 * 25 24 23 47 47 H 1.07999 * 119.99958 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00403 * 180.02562 * 27 26 25 49 49 H 1.08994 * 110.48573 * 143.47546 * 28 7 6 50 50 H 1.09004 * 110.48094 * 265.98573 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 3.4367 -0.8795 1.5223 7 6 3.4694 -1.9979 2.5875 8 1 4.2485 -1.8102 3.3263 9 7 3.6470 -3.3114 1.9633 10 6 4.0763 -4.3550 2.7001 11 8 4.3160 -4.2068 3.8797 12 6 4.2596 -5.7060 2.0579 13 1 3.3081 -6.0459 1.6490 14 6 5.2744 -5.6015 0.9487 15 1 6.1044 -4.9164 1.0390 16 6 5.1432 -6.3805 -0.1813 17 7 4.0692 -7.1208 -0.3486 18 14 6.4910 -6.3843 -1.4747 19 1 7.4779 -7.4478 -1.1580 20 1 5.8951 -6.6436 -2.8099 21 1 7.1716 -5.0645 -1.4842 22 6 4.7429 -6.6916 3.0904 23 6 5.9940 -6.5399 3.6584 24 6 6.4354 -7.4411 4.6090 25 6 5.6298 -8.4999 4.9843 26 6 4.3810 -8.6549 4.4122 27 6 3.9374 -7.7506 3.4654 28 6 2.0643 -1.8716 3.2204 29 6 1.2248 -1.2327 2.1361 30 8 0.0123 -1.2132 2.1171 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1299 -0.7209 -1.2495 40 1 3.8562 0.0409 1.9287 41 1 3.9900 -1.1874 0.6350 42 1 3.4557 -3.4298 1.0197 43 1 3.9768 -7.6686 -1.1438 44 1 6.6249 -5.7148 3.3624 45 1 7.4112 -7.3203 5.0557 46 1 5.9762 -9.2062 5.7243 47 1 3.7517 -9.4823 4.7051 48 1 2.9615 -7.8714 3.0186 49 1 1.6717 -2.8554 3.4772 50 1 2.0998 -1.2335 4.1035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362207822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:36 Heat of formation + Delta-G solvation = -50.431241 kcal Electronic energy + Delta-G solvation = -31098.132682 eV Core-core repulsion = 27089.836429 eV Total energy + Delta-G solvation = -4008.296253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.86343 -39.11902 -37.81625 -36.70659 -35.91993 -33.70101 -32.68841 -31.13432 -29.96607 -29.49307 -27.95713 -27.49193 -27.38948 -26.67909 -24.01066 -22.07915 -21.62693 -21.49500 -20.50985 -19.43405 -18.55692 -16.93190 -16.61642 -16.53548 -16.13979 -15.82475 -15.31500 -14.75259 -14.55701 -14.34352 -14.08112 -13.95425 -13.90888 -13.81208 -13.58848 -13.30109 -12.96384 -12.75621 -12.48098 -12.38716 -12.29631 -12.16083 -12.00447 -11.79586 -11.70267 -11.55052 -11.49337 -11.36912 -11.26189 -11.11074 -11.08186 -11.06386 -10.44297 -10.30815 -10.03236 -9.49652 -9.38584 -8.86896 -8.74422 -8.63098 -8.47085 -7.97587 -7.65046 -6.32667 -4.38374 2.34412 2.37203 2.69435 2.91869 3.16099 3.24140 3.24340 3.59826 3.81951 4.23195 4.37229 4.49291 4.76900 4.79197 4.82808 4.89857 4.95914 5.04889 5.26803 5.33944 5.42188 5.48316 5.55581 5.62714 5.64021 5.69972 5.72041 5.74006 5.79432 5.82539 5.88691 5.94372 6.01928 6.17481 6.19747 6.28289 6.30366 6.46702 6.56497 6.65427 6.83744 6.94044 7.06323 7.16364 7.17223 7.34382 7.41328 7.57507 7.71785 7.91867 8.02722 8.25519 8.28573 8.65691 9.13983 9.27673 10.75876 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003640 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.432547 B = 7691.132195 C = 9166.078144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.173 3.827 3 C -0.156 4.156 4 C -0.161 4.161 5 N -0.611 5.611 6 C 0.095 3.905 7 C 0.139 3.861 8 H 0.110 0.890 9 N -0.722 5.722 10 C 0.532 3.468 11 O -0.563 6.563 12 C 0.049 3.951 13 H 0.092 0.908 14 C -0.516 4.516 15 H 0.063 0.937 16 C 0.076 3.924 17 N -0.878 5.878 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.012 4.012 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.120 4.120 28 C -0.168 4.168 29 C 0.523 3.477 30 O -0.533 6.533 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.407 0.593 43 H 0.267 0.733 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 11.943 0.479 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.090 3.910 3 C -0.214 4.214 4 C -0.219 4.219 5 N -0.346 5.346 6 C -0.029 4.029 7 C 0.032 3.968 8 H 0.127 0.873 9 N -0.375 5.375 10 C 0.322 3.678 11 O -0.442 6.442 12 C 0.028 3.972 13 H 0.110 0.890 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.129 4.129 17 N -0.513 5.513 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.013 4.013 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.138 4.138 28 C -0.210 4.210 29 C 0.311 3.689 30 O -0.410 6.410 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.243 0.757 43 H 0.077 0.923 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.130 0.870 49 H 0.124 0.876 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.101 11.960 1.097 12.193 hybrid contribution 0.805 -0.255 -1.282 1.535 sum -1.296 11.705 -0.184 11.778 Atomic orbital electron populations 1.22087 0.92244 1.03705 1.01684 1.20448 0.95243 0.91371 0.83930 1.22182 1.01501 0.95304 1.02408 1.22213 1.01743 1.01409 0.96497 1.48426 1.07072 1.56627 1.22492 1.22378 0.82442 0.98501 0.99576 1.21624 0.96586 0.83854 0.94734 0.87259 1.45967 1.69707 1.07788 1.14003 1.21668 0.73078 0.87141 0.85923 1.90589 1.51480 1.85483 1.16609 1.18138 1.01022 0.85924 0.92159 0.89019 1.20651 1.09901 1.24636 1.00122 0.91912 1.24955 0.95371 0.94736 0.97878 1.69878 1.26016 1.27092 1.28343 0.86518 0.81943 0.78810 0.80385 1.20291 1.21080 1.19643 1.20046 0.93178 0.95262 0.92835 1.20818 0.95966 0.98079 0.95395 1.20961 0.99164 0.96057 0.99092 1.20807 0.95364 0.98911 1.01557 1.20910 0.96369 0.99326 0.98378 1.21011 0.99723 0.95602 0.97482 1.22858 0.96351 1.03770 0.98004 1.20902 0.87389 0.77376 0.83206 1.90700 1.12902 1.59666 1.77688 0.91417 0.92644 0.91142 0.92186 0.91434 0.92288 0.91641 0.91446 0.91990 0.90054 0.89295 0.75695 0.92264 0.87075 0.87579 0.87699 0.87538 0.86997 0.87603 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.00 37.16 0.26 -1.40 16 2 C 0.17 1.85 1.20 -131.82 -0.16 1.69 16 3 C -0.16 -1.32 8.54 37.16 0.32 -1.00 16 4 C -0.16 -1.62 8.49 37.16 0.32 -1.31 16 5 N -0.61 -7.29 2.76 -157.57 -0.43 -7.73 16 6 C 0.09 0.99 6.21 -3.12 -0.02 0.97 16 7 C 0.14 1.84 3.43 -66.30 -0.23 1.62 16 8 H 0.11 1.46 7.73 -51.93 -0.40 1.06 16 9 N -0.72 -12.06 5.06 -52.22 -0.26 -12.33 16 10 C 0.53 10.96 7.04 -10.98 -0.08 10.89 16 11 O -0.56 -12.63 15.16 5.56 0.08 -12.55 16 12 C 0.05 1.11 2.44 -94.07 -0.23 0.88 16 13 H 0.09 2.26 7.00 -51.93 -0.36 1.89 16 14 C -0.52 -12.29 7.46 -34.44 -0.26 -12.54 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.08 1.86 5.45 -17.82 -0.10 1.76 16 17 N -0.88 -22.62 12.78 55.43 0.71 -21.91 16 18 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 C -0.01 -0.28 4.30 -104.62 -0.45 -0.73 16 23 C -0.08 -1.84 8.31 -39.58 -0.33 -2.16 16 24 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 25 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 26 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 27 C -0.12 -2.58 9.67 -39.58 -0.38 -2.96 16 28 C -0.17 -2.29 6.58 -26.74 -0.18 -2.47 16 29 C 0.52 7.63 7.84 -10.86 -0.09 7.54 16 30 O -0.53 -9.34 13.99 5.56 0.08 -9.26 16 31 H 0.07 0.89 7.06 -51.93 -0.37 0.52 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 34 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.59 7.21 -51.93 -0.37 0.22 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.91 7.02 -51.92 -0.36 0.55 16 42 H 0.41 6.80 8.46 -40.82 -0.35 6.46 16 43 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 44 H 0.11 2.42 7.89 -52.49 -0.41 2.00 16 45 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 46 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 47 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 48 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 49 H 0.11 1.68 8.09 -51.93 -0.42 1.26 16 50 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -29.22 405.41 -9.55 -38.77 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -8.02 Total: 12.76 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.79 Total: -8.22 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.01 Total: -41.96 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.16 Total: -21.81 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.22 -9.55 -38.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362207822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.665 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds