Wall clock time and date at job start Wed Apr 1 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00129 * 2 1 4 4 C 1.46896 * 110.99873 * 123.95671 * 2 1 3 5 5 H 1.08996 * 112.95075 * 275.08189 * 4 2 1 6 6 C 1.53956 * 113.66573 * 46.48621 * 4 2 1 7 7 C 1.53949 * 87.29686 * 139.20218 * 6 4 2 8 8 H 1.09002 * 113.65815 * 89.83278 * 7 6 4 9 9 N 1.46492 * 113.66545 * 220.79679 * 7 6 4 10 10 S 1.65601 * 120.00201 * 245.49881 * 9 7 6 11 11 O 1.42101 * 104.27931 * 181.07075 * 10 9 7 12 12 O 1.42105 * 104.27535 * 308.92929 * 10 9 7 13 13 C 1.81402 * 104.45114 * 64.99531 * 10 9 7 14 14 C 1.52995 * 109.47167 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.47328 * 299.99828 * 14 13 10 16 16 C 1.52995 * 109.47401 * 60.00212 * 14 13 10 17 17 C 1.50705 * 109.46989 * 180.02562 * 14 13 10 18 18 H 1.07995 * 120.00011 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99985 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99966 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00134 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46722 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47058 * 119.99424 * 21 19 17 24 24 H 1.48492 * 109.47314 * 240.00058 * 21 19 17 25 25 C 1.52909 * 86.78489 * 335.27076 * 7 6 4 26 26 C 1.52912 * 121.13358 * 259.18351 * 25 7 6 27 27 C 1.53959 * 86.77808 * 209.37653 * 26 25 7 28 28 C 1.52906 * 121.14397 * 150.61655 * 25 7 6 29 29 H 1.09002 * 109.46850 * 296.04514 * 1 2 3 30 30 H 1.09001 * 109.46990 * 56.04068 * 1 2 3 31 31 H 1.08998 * 109.47656 * 176.04818 * 1 2 3 32 32 H 1.09000 * 109.47306 * 177.03863 * 3 2 1 33 33 H 1.08994 * 109.47571 * 297.04237 * 3 2 1 34 34 H 1.09004 * 109.46813 * 57.04476 * 3 2 1 35 35 H 1.09007 * 113.57605 * 24.59958 * 6 4 2 36 36 H 1.08997 * 113.58156 * 253.80803 * 6 4 2 37 37 H 0.97005 * 120.00406 * 65.49710 * 9 7 6 38 38 H 1.08996 * 109.47036 * 300.00614 * 13 10 9 39 39 H 1.09001 * 109.46861 * 60.00389 * 13 10 9 40 40 H 1.09002 * 109.46770 * 60.00282 * 15 14 13 41 41 H 1.09000 * 109.47408 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47400 * 300.00739 * 15 14 13 43 43 H 1.09004 * 109.47020 * 59.99751 * 16 14 13 44 44 H 1.08995 * 109.47868 * 179.97438 * 16 14 13 45 45 H 1.09002 * 109.47075 * 299.99950 * 16 14 13 46 46 H 0.97001 * 120.00450 * 180.02562 * 20 19 17 47 47 H 1.08998 * 113.65950 * 323.84284 * 26 25 7 48 48 H 1.08997 * 113.66383 * 94.90813 * 26 25 7 49 49 H 1.09001 * 113.58020 * 270.12571 * 27 26 25 50 50 H 1.09000 * 113.64753 * 139.34339 * 27 26 25 51 51 H 1.08994 * 113.66161 * 265.09395 * 28 25 7 52 52 H 1.09008 * 113.65824 * 36.05019 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 2.0647 -0.1762 2.0515 6 6 1.3105 -2.1308 1.3335 7 6 2.7055 -2.7050 1.6405 8 1 2.9737 -2.6615 2.6961 9 7 2.9429 -4.0227 1.0462 10 16 3.1521 -5.3451 2.0207 11 8 3.3789 -6.4159 1.1145 12 8 4.1532 -4.9438 2.9459 13 6 1.5557 -5.5473 2.8582 14 6 1.6224 -6.7519 3.7991 15 6 1.9380 -8.0127 2.9920 16 6 2.7196 -6.5252 4.8409 17 6 0.2959 -6.9202 4.4944 18 1 -0.5135 -6.2361 4.2863 19 6 0.1160 -7.9469 5.3970 20 7 1.1018 -8.7795 5.6508 21 14 -1.5278 -8.1551 6.2594 22 1 -2.4637 -7.0961 5.8032 23 1 -2.0924 -9.4893 5.9333 24 1 -1.3341 -8.0449 7.7275 25 6 3.2688 -1.5484 0.8140 26 6 3.7227 -1.7570 -0.6312 27 6 4.7281 -0.6165 -0.3885 28 6 4.6513 -0.9655 1.1089 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0838 1.3428 0.0531 33 1 1.6896 1.8781 -0.9152 34 1 1.6038 1.9109 0.8624 35 1 0.8655 -2.5302 0.4220 36 1 0.6303 -2.1591 2.1847 37 1 2.9776 -4.1207 0.0817 38 1 1.3310 -4.6492 3.4335 39 1 0.7739 -5.7084 2.1160 40 1 2.8973 -7.8912 2.4888 41 1 1.9860 -8.8708 3.6623 42 1 1.1563 -8.1742 2.2497 43 1 2.4947 -5.6269 5.4160 44 1 2.7669 -7.3831 5.5116 45 1 3.6789 -6.4037 4.3377 46 1 0.9752 -9.5021 6.2855 47 1 4.1929 -2.7246 -0.8066 48 1 2.9576 -1.5161 -1.3692 49 1 4.3330 0.3710 -0.6269 50 1 5.7088 -0.7972 -0.8286 51 1 4.6279 -0.0924 1.7609 52 1 5.3820 -1.7105 1.4240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364104953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:35 Heat of formation + Delta-G solvation = -40.942036 kcal Electronic energy + Delta-G solvation = -30567.736498 eV Core-core repulsion = 26695.295679 eV Total energy + Delta-G solvation = -3872.440819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.87256 -38.11681 -38.07590 -37.20695 -36.86468 -36.19391 -33.63212 -33.00702 -28.44506 -28.31247 -27.68547 -27.24517 -26.63900 -26.09849 -25.43339 -22.83092 -21.63781 -21.36666 -20.20843 -19.20228 -18.62302 -17.87203 -17.75109 -16.89174 -16.66740 -16.58775 -16.39840 -16.29518 -15.33510 -15.28509 -14.99090 -14.76509 -14.66625 -14.41630 -14.18551 -13.82657 -13.69567 -13.41577 -13.18903 -13.06346 -13.00745 -12.97291 -12.91923 -12.88229 -12.74212 -12.57591 -12.48545 -12.42507 -12.19613 -12.16228 -12.06845 -11.93753 -11.78026 -11.55973 -11.34842 -11.17593 -11.04249 -10.92909 -10.58914 -10.41561 -10.04273 -9.20688 -8.02282 -6.20713 -0.57226 1.43230 1.46317 1.55712 1.92327 2.44678 2.87790 3.04913 3.20180 3.35594 3.46703 3.50210 3.72029 3.78672 3.96087 4.01013 4.05682 4.18215 4.25631 4.32559 4.48586 4.58858 4.59838 4.61128 4.71970 4.74335 4.82247 4.87040 4.87521 4.89464 4.93633 4.97774 5.00017 5.04943 5.06944 5.09452 5.13487 5.24874 5.32956 5.39180 5.43324 5.51677 5.54585 5.65713 5.68410 5.97959 6.12063 6.14962 6.16330 6.22326 6.35068 6.84447 7.47596 8.97772 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003303 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.284170 B = 8476.077799 C = 9584.102055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.019 3.981 4 C 0.085 3.915 5 H 0.078 0.922 6 C -0.146 4.146 7 C 0.122 3.878 8 H 0.111 0.889 9 N -1.094 6.094 10 S 2.611 3.389 11 O -0.996 6.996 12 O -0.992 6.992 13 C -0.582 4.582 14 C 0.069 3.931 15 C -0.160 4.160 16 C -0.159 4.159 17 C -0.514 4.514 18 H 0.064 0.936 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.088 4.088 26 C -0.106 4.106 27 C -0.130 4.130 28 C -0.135 4.135 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.422 0.578 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 21.046 -12.380 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.129 4.129 4 C -0.024 4.024 5 H 0.096 0.904 6 C -0.185 4.185 7 C 0.014 3.986 8 H 0.128 0.872 9 N -0.853 5.853 10 S 2.709 3.291 11 O -0.986 6.986 12 O -0.981 6.981 13 C -0.715 4.715 14 C 0.067 3.933 15 C -0.218 4.218 16 C -0.217 4.217 17 C -0.553 4.553 18 H 0.082 0.918 19 C -0.183 4.183 20 N -0.548 5.548 21 Si 0.780 3.220 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.091 4.091 26 C -0.144 4.144 27 C -0.167 4.167 28 C -0.173 4.173 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.258 0.742 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.711 20.178 -12.462 23.778 hybrid contribution -1.535 -0.103 1.269 1.995 sum 0.175 20.076 -11.193 22.986 Atomic orbital electron populations 1.22427 0.86757 1.02725 1.00719 1.62042 1.08223 1.14115 1.41286 1.22550 1.01061 0.88175 1.01121 1.22614 0.94224 0.93015 0.92542 0.90426 1.23686 0.96351 0.94977 1.03508 1.22190 0.97360 0.81032 0.98010 0.87163 1.55245 1.89872 1.20410 1.19784 1.04770 0.77806 0.72542 0.74016 1.93502 1.86122 1.55102 1.63903 1.93503 1.56761 1.82202 1.65662 1.30442 1.20565 1.08527 1.11927 1.17918 0.96162 0.88328 0.90869 1.22211 0.98169 1.02381 0.99066 1.22196 0.96246 1.01961 1.01280 1.21323 0.97303 1.13133 1.23542 0.91779 1.25685 0.99660 0.95589 0.97344 1.69954 1.32553 1.17072 1.35175 0.85564 0.80368 0.77913 0.78125 1.18845 1.21070 1.21020 1.22905 0.94015 0.94435 0.97743 1.22398 0.98887 0.98493 0.94585 1.22850 0.99229 0.99341 0.95301 1.22821 0.96045 1.00634 0.97802 0.95637 0.90669 0.91067 0.90780 0.90610 0.95609 0.87919 0.89917 0.74180 0.84577 0.84530 0.95064 0.91094 0.94125 0.94050 0.91168 0.94964 0.92992 0.90902 0.89591 0.88869 0.91603 0.90802 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.18 127.69 1.17 1.45 16 2 N -0.53 -7.60 4.10 -921.56 -3.78 -11.38 16 3 C 0.02 0.22 9.50 127.69 1.21 1.43 16 4 C 0.09 1.38 3.28 45.21 0.15 1.53 16 5 H 0.08 1.23 8.05 -2.39 -0.02 1.21 16 6 C -0.15 -2.59 6.36 31.23 0.20 -2.39 16 7 C 0.12 2.70 4.20 45.28 0.19 2.89 16 8 H 0.11 2.60 7.75 -2.39 -0.02 2.58 16 9 N -1.09 -28.02 5.50 -168.19 -0.92 -28.95 16 10 S 2.61 93.94 4.47 -56.49 -0.25 93.69 16 11 O -1.00 -41.57 15.70 -127.65 -2.00 -43.57 16 12 O -0.99 -41.01 15.18 -127.65 -1.94 -42.95 16 13 C -0.58 -21.62 5.01 71.98 0.36 -21.26 16 14 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 15 C -0.16 -8.02 7.77 71.98 0.56 -7.46 16 16 C -0.16 -7.88 7.78 71.98 0.56 -7.32 16 17 C -0.51 -26.50 8.01 25.60 0.21 -26.29 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 19 C 0.02 0.87 5.15 84.66 0.44 1.30 16 20 N -0.91 -50.36 9.35 21.45 0.20 -50.16 16 21 Si 0.95 41.92 29.54 68.60 2.03 43.94 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C -0.09 -1.62 1.06 -52.31 -0.06 -1.68 16 26 C -0.11 -1.85 6.82 30.89 0.21 -1.64 16 27 C -0.13 -2.01 7.94 31.23 0.25 -1.77 16 28 C -0.14 -2.47 7.84 30.88 0.24 -2.22 16 29 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.95 6.52 -2.39 -0.02 0.93 16 32 H 0.07 0.84 5.52 -2.39 -0.01 0.83 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.10 1.77 7.27 -2.38 -0.02 1.75 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.42 9.37 7.39 -96.74 -0.72 8.65 16 38 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 39 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 40 H 0.03 1.49 5.47 -2.39 -0.01 1.48 16 41 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 42 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 45 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 46 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 47 H 0.07 1.37 7.17 -2.39 -0.02 1.35 16 48 H 0.09 1.47 7.57 -2.39 -0.02 1.45 16 49 H 0.09 1.23 5.65 -2.39 -0.01 1.22 16 50 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -65.82 395.28 -0.82 -66.64 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.19 Total: 32.88 kcal Atomic # 6 Polarization: -65.81 SS G_CDS: 5.66 Total: -60.14 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -4.51 Total: -90.48 kcal Atomic # 8 Polarization: -82.58 SS G_CDS: -3.94 Total: -86.52 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 93.94 SS G_CDS: -0.25 Total: 93.69 kcal Total: -65.82 -0.82 -66.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364104953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.699 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds