Wall clock time and date at job start Wed Apr 1 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00479 * 2 1 4 4 C 1.46899 * 111.00045 * 123.95543 * 2 1 3 5 5 H 1.08998 * 112.88615 * 323.26468 * 4 2 1 6 6 C 1.53952 * 113.66359 * 191.91709 * 4 2 1 7 7 C 1.53952 * 87.29645 * 220.70164 * 6 4 2 8 8 H 1.09003 * 113.66212 * 270.17515 * 7 6 4 9 9 N 1.46495 * 113.66116 * 139.20649 * 7 6 4 10 10 S 1.65602 * 119.99542 * 114.50870 * 9 7 6 11 11 O 1.42104 * 104.27848 * 308.92298 * 10 9 7 12 12 O 1.42107 * 104.27491 * 181.06912 * 10 9 7 13 13 C 1.81395 * 104.45255 * 64.99818 * 10 9 7 14 14 C 1.53003 * 109.47221 * 179.97438 * 13 10 9 15 15 C 1.52994 * 109.46989 * 60.00185 * 14 13 10 16 16 C 1.52999 * 109.47185 * 299.99934 * 14 13 10 17 17 C 1.50696 * 109.47133 * 180.02562 * 14 13 10 18 18 H 1.08000 * 119.99992 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00241 * 180.02562 * 17 14 13 20 20 N 1.31519 * 119.99649 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 120.00326 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47247 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47129 * 300.00040 * 21 19 17 24 24 H 1.48499 * 109.47151 * 60.00274 * 21 19 17 25 25 C 1.52912 * 113.74476 * 94.68866 * 4 2 1 26 26 C 1.52907 * 121.13901 * 265.10835 * 25 4 2 27 27 C 1.53949 * 86.78323 * 100.81513 * 26 25 4 28 28 C 1.52902 * 121.13537 * 13.67100 * 25 4 2 29 29 H 1.09000 * 109.46603 * 296.04656 * 1 2 3 30 30 H 1.09001 * 109.46777 * 56.04446 * 1 2 3 31 31 H 1.08995 * 109.47161 * 176.04019 * 1 2 3 32 32 H 1.08994 * 109.48034 * 189.85685 * 3 2 1 33 33 H 1.09004 * 109.46824 * 309.85966 * 3 2 1 34 34 H 1.09004 * 109.47210 * 69.85527 * 3 2 1 35 35 H 1.08998 * 113.57364 * 106.09604 * 6 4 2 36 36 H 1.08994 * 113.57772 * 335.30791 * 6 4 2 37 37 H 0.96995 * 120.00363 * 294.50222 * 9 7 6 38 38 H 1.08999 * 109.47312 * 60.00032 * 13 10 9 39 39 H 1.09001 * 109.47313 * 300.00161 * 13 10 9 40 40 H 1.08999 * 109.47473 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47373 * 300.00222 * 15 14 13 42 42 H 1.09006 * 109.47563 * 59.99454 * 15 14 13 43 43 H 1.08998 * 109.47367 * 300.00177 * 16 14 13 44 44 H 1.09003 * 109.47055 * 59.99928 * 16 14 13 45 45 H 1.08999 * 109.46973 * 179.97438 * 16 14 13 46 46 H 0.97002 * 120.00148 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.66387 * 215.28965 * 26 25 4 48 48 H 1.09003 * 113.65966 * 346.34546 * 26 25 4 49 49 H 1.09004 * 113.58207 * 270.13488 * 27 26 25 50 50 H 1.08998 * 113.65360 * 139.34508 * 27 26 25 51 51 H 1.09002 * 113.66521 * 13.65238 * 28 25 4 52 52 H 1.09002 * 113.66865 * 144.62005 * 28 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.3961 -0.6499 2.0405 6 6 3.5050 -0.5705 1.3686 7 6 3.5823 -2.0808 1.6571 8 1 3.4304 -2.3341 2.7063 9 7 4.7615 -2.7301 1.0791 10 16 5.9205 -3.3756 2.0703 11 8 6.2296 -2.3264 2.9775 12 8 6.9016 -3.8845 1.1771 13 6 5.0769 -4.7323 2.9295 14 6 6.0554 -5.4167 3.8862 15 6 6.5614 -4.4001 4.9115 16 6 7.2392 -5.9734 3.0928 17 6 5.3548 -6.5442 4.5995 18 1 4.3157 -6.7521 4.3910 19 6 6.0402 -7.3103 5.5182 20 7 7.3055 -7.0568 5.7724 21 14 5.1716 -8.7074 6.4030 22 1 6.1209 -9.3710 7.3323 23 1 4.0222 -8.1673 7.1727 24 1 4.6809 -9.6944 5.4078 25 6 2.3229 -2.2213 0.8012 26 6 1.3121 -3.3392 1.0592 27 6 0.9896 -3.2766 -0.4448 28 6 2.4020 -2.6990 -0.6492 29 1 -0.3632 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0710 32 1 3.0710 1.3478 -0.1759 33 1 1.5109 1.9466 -0.7889 34 1 1.7954 1.8374 0.9648 35 1 3.7367 0.0511 2.2334 36 1 4.0477 -0.2694 0.4726 37 1 4.8633 -2.7820 0.1159 38 1 4.7168 -5.4567 2.1991 39 1 4.2332 -4.3358 3.4944 40 1 7.2588 -4.8875 5.5928 41 1 7.0683 -3.5848 4.3952 42 1 5.7180 -4.0034 5.4767 43 1 6.8787 -6.6976 2.3623 44 1 7.7461 -5.1581 2.5764 45 1 7.9365 -6.4606 3.7744 46 1 7.7879 -7.5960 6.4185 47 1 1.7689 -4.2788 1.3700 48 1 0.4813 -3.0389 1.6977 49 1 0.1920 -2.5756 -0.6909 50 1 0.8484 -4.2555 -0.9029 51 1 2.4418 -1.8873 -1.3756 52 1 3.1660 -3.4576 -0.8190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364104955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:41 Heat of formation + Delta-G solvation = -20.786213 kcal Electronic energy + Delta-G solvation = -30618.120327 eV Core-core repulsion = 26746.553530 eV Total energy + Delta-G solvation = -3871.566797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.06930 -36.57288 -36.49465 -36.26054 -35.35013 -35.14573 -32.05897 -31.65383 -27.88923 -26.64588 -25.85665 -25.70547 -25.36480 -25.20589 -24.65496 -22.05278 -20.86529 -19.60985 -18.73107 -18.29510 -17.22769 -16.85907 -15.98375 -15.84254 -15.60115 -15.24213 -15.10105 -14.76462 -14.54510 -14.36177 -14.08073 -13.39469 -13.11440 -13.00319 -12.82632 -12.61280 -12.49361 -12.36265 -12.19980 -12.11139 -11.99483 -11.81427 -11.79063 -11.39658 -11.34199 -11.14358 -11.05197 -11.00416 -10.89488 -10.69943 -10.44300 -10.38317 -10.26141 -10.21792 -10.15175 -10.04884 -9.64174 -9.52476 -9.06354 -8.66031 -8.57586 -8.39490 -6.02895 -4.14976 0.90654 3.21267 3.26848 3.32477 3.33918 3.71701 4.25037 4.25765 4.33874 4.40758 4.49655 4.64770 4.76338 4.79485 4.84926 4.87613 5.07312 5.10977 5.18160 5.22356 5.31259 5.34563 5.39057 5.53426 5.60333 5.61479 5.66641 5.72463 5.75710 5.78407 5.81592 5.87080 5.93228 6.09710 6.29331 6.32979 6.40347 6.43489 6.71350 6.76544 6.80731 6.86197 6.91926 7.03895 7.19505 7.32541 7.51440 7.68095 7.98828 8.10267 8.33684 8.83300 9.50354 10.98369 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.003274 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.243362 B = 8549.556248 C = 9317.348391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.528 5.528 3 C 0.023 3.977 4 C 0.076 3.924 5 H 0.075 0.925 6 C -0.143 4.143 7 C 0.144 3.856 8 H 0.112 0.888 9 N -1.112 6.112 10 S 2.591 3.409 11 O -0.963 6.963 12 O -0.967 6.967 13 C -0.582 4.582 14 C 0.083 3.917 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.502 4.502 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.095 4.095 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.105 4.105 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.412 0.588 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.263 0.737 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.082 0.918 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 12.922 -11.683 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.251 5.251 3 C -0.125 4.125 4 C -0.033 4.033 5 H 0.093 0.907 6 C -0.182 4.182 7 C 0.035 3.965 8 H 0.130 0.870 9 N -0.867 5.867 10 S 2.689 3.311 11 O -0.953 6.953 12 O -0.957 6.957 13 C -0.715 4.715 14 C 0.081 3.919 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.723 3.277 22 H -0.212 1.212 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.097 4.097 26 C -0.169 4.169 27 C -0.174 4.174 28 C -0.143 4.143 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.251 12.988 -11.753 21.376 hybrid contribution -1.427 -0.770 1.017 1.914 sum -13.678 12.218 -10.737 21.252 Atomic orbital electron populations 1.22510 0.87632 1.02438 1.00228 1.62035 1.07570 1.13518 1.42017 1.22391 1.01368 0.88655 1.00100 1.22766 0.95518 0.93072 0.91906 0.90695 1.23591 0.94470 0.97358 1.02814 1.21806 0.84675 0.92614 0.97378 0.87031 1.55756 1.37383 1.73581 1.19963 1.05664 0.74383 0.76562 0.74478 1.93546 1.82318 1.54172 1.65282 1.93552 1.56590 1.81608 1.63951 1.30534 1.12819 1.16054 1.12129 1.17907 0.90142 0.93775 0.90096 1.22271 1.01561 0.96825 1.01451 1.22274 1.00225 1.00133 0.99518 1.20906 0.96995 1.13742 1.22530 0.92385 1.24936 0.94917 0.97345 0.96524 1.69795 1.08522 1.39654 1.34207 0.86605 0.79341 0.82200 0.79515 1.21199 1.20293 1.20276 1.22953 0.95108 0.93855 0.97814 1.22833 0.98429 0.98760 0.96908 1.22840 0.97579 1.00741 0.96285 1.22398 0.96862 1.00277 0.94719 0.95789 0.91595 0.90939 0.90959 0.91706 0.95587 0.90591 0.88622 0.75418 0.86303 0.86648 0.88688 0.95325 0.94551 0.94488 0.95385 0.88679 0.92698 0.89381 0.91663 0.90166 0.91842 0.89943 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.52 60.07 0.57 0.72 16 2 N -0.53 -4.46 4.12 -242.63 -1.00 -5.46 16 3 C 0.02 0.17 9.03 60.06 0.54 0.72 16 4 C 0.08 0.71 3.34 -67.26 -0.22 0.49 16 5 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 6 C -0.14 -1.52 6.44 -25.75 -0.17 -1.68 16 7 C 0.14 1.71 4.10 -67.48 -0.28 1.44 16 8 H 0.11 1.33 7.67 -51.93 -0.40 0.93 16 9 N -1.11 -14.98 5.50 -4.51 -0.02 -15.01 16 10 S 2.59 47.51 4.44 -107.50 -0.48 47.03 16 11 O -0.96 -20.06 15.44 -57.54 -0.89 -20.95 16 12 O -0.97 -20.33 15.70 -57.54 -0.90 -21.23 16 13 C -0.58 -11.18 5.01 37.16 0.19 -10.99 16 14 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 15 C -0.16 -4.01 7.78 37.15 0.29 -3.72 16 16 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 17 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -24.13 9.35 55.43 0.52 -23.61 16 21 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.09 -0.94 1.06 -154.71 -0.16 -1.10 16 26 C -0.13 -1.26 7.84 -26.28 -0.21 -1.47 16 27 C -0.14 -1.20 8.04 -25.75 -0.21 -1.41 16 28 C -0.10 -1.00 6.82 -26.28 -0.18 -1.18 16 29 H 0.02 0.17 8.13 -51.93 -0.42 -0.25 16 30 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.07 0.52 5.70 -51.93 -0.30 0.22 16 32 H 0.07 0.56 6.70 -51.93 -0.35 0.22 16 33 H 0.06 0.42 8.02 -51.93 -0.42 0.01 16 34 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.02 7.15 -51.93 -0.37 0.64 16 37 H 0.41 4.87 7.39 -34.47 -0.25 4.62 16 38 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 39 H 0.12 1.99 7.75 -51.92 -0.40 1.58 16 40 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 41 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 45 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 46 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.65 5.75 -51.93 -0.30 0.35 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.08 0.80 7.57 -51.93 -0.39 0.41 16 52 H 0.08 0.78 7.16 -51.93 -0.37 0.41 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -31.12 395.17 -10.76 -41.88 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.93 Total: 7.65 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 0.01 Total: -31.82 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.51 Total: -44.08 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.79 Total: -42.18 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.48 Total: 47.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.12 -10.76 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364104955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.095 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds