Wall clock time and date at job start Wed Apr 1 2020 03:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46924 * 2 1 4 4 C 1.53005 * 109.47042 * 119.99585 * 2 1 3 5 5 N 1.46496 * 109.47009 * 175.23471 * 4 2 1 6 6 C 1.45646 * 117.70938 * 275.67821 * 5 4 2 7 7 C 1.52984 * 110.77646 * 158.10136 * 6 5 4 8 8 N 1.47261 * 108.18637 * 46.72457 * 7 6 5 9 9 C 1.34782 * 121.35240 * 118.47831 * 8 7 6 10 10 O 1.21275 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99785 * 179.97438 * 9 8 7 12 12 H 1.08994 * 109.47312 * 299.99604 * 11 9 8 13 13 C 1.50696 * 109.47247 * 59.99989 * 11 9 8 14 14 H 1.08003 * 119.99837 * 234.74019 * 13 11 9 15 15 C 1.37876 * 120.00338 * 54.46566 * 13 11 9 16 16 N 1.31520 * 119.99758 * 2.01398 * 15 13 11 17 17 Si 1.86795 * 120.00173 * 182.01375 * 15 13 11 18 18 H 1.48499 * 109.47076 * 89.99906 * 17 15 13 19 19 H 1.48501 * 109.47144 * 209.99641 * 17 15 13 20 20 H 1.48497 * 109.47417 * 330.00128 * 17 15 13 21 21 C 1.50706 * 109.46877 * 179.97438 * 11 9 8 22 22 C 1.38247 * 119.99542 * 242.11135 * 21 11 9 23 23 C 1.38234 * 119.99234 * 179.78637 * 22 21 11 24 24 C 1.38233 * 120.00362 * 0.43966 * 23 22 21 25 25 C 1.38231 * 120.00086 * 359.81088 * 24 23 22 26 26 C 1.38232 * 120.00304 * 62.38120 * 21 11 9 27 27 C 1.47047 * 117.29549 * 298.74600 * 8 7 6 28 28 C 1.33382 * 117.70328 * 95.69861 * 5 4 2 29 29 O 1.21279 * 118.48995 * 4.32097 * 28 5 4 30 30 H 1.08998 * 109.47650 * 300.00193 * 1 2 3 31 31 H 1.09002 * 109.47442 * 60.00267 * 1 2 3 32 32 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47389 * 239.99346 * 2 1 3 34 34 H 1.09003 * 109.47087 * 305.70264 * 3 2 1 35 35 H 1.08991 * 109.47699 * 65.70297 * 3 2 1 36 36 H 1.09006 * 109.47148 * 185.70649 * 3 2 1 37 37 H 1.09004 * 109.46833 * 55.23392 * 4 2 1 38 38 H 1.08996 * 109.46900 * 295.23646 * 4 2 1 39 39 H 1.08998 * 109.21601 * 37.76591 * 6 5 4 40 40 H 1.09004 * 109.18144 * 278.41370 * 6 5 4 41 41 H 1.09000 * 109.72022 * 287.05166 * 7 6 5 42 42 H 1.08997 * 109.71995 * 166.40201 * 7 6 5 43 43 H 0.96997 * 119.99404 * 179.97438 * 16 15 13 44 44 H 1.07997 * 119.99829 * 359.97438 * 22 21 11 45 45 H 1.08004 * 119.99523 * 180.27280 * 23 22 21 46 46 H 1.08008 * 119.99825 * 179.83278 * 24 23 22 47 47 H 1.07995 * 119.99784 * 179.97438 * 25 24 23 48 48 H 1.07993 * 119.99759 * 359.97438 * 26 21 11 49 49 H 1.09000 * 109.57234 * 162.31354 * 27 8 7 50 50 H 1.08999 * 109.56796 * 282.66813 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5004 -0.8213 1.1933 6 6 4.0749 -1.9321 0.4468 7 6 5.5121 -1.6180 0.0267 8 7 6.2238 -1.0733 1.1951 9 6 7.2999 -1.6970 1.7143 10 8 7.7003 -2.7290 1.2188 11 6 8.0056 -1.1121 2.9105 12 1 8.3721 -0.1155 2.6646 13 6 7.0437 -1.0224 4.0670 14 1 6.8860 -0.0777 4.5662 15 6 6.3606 -2.1451 4.4843 16 7 6.5780 -3.3025 3.8988 17 14 5.1265 -2.0221 5.8811 18 1 3.7829 -1.7139 5.3288 19 1 5.0766 -3.3135 6.6126 20 1 5.5387 -0.9413 6.8122 21 6 9.1662 -1.9951 3.2904 22 6 9.1923 -2.6072 4.5297 23 6 10.2548 -3.4206 4.8764 24 6 11.2955 -3.6149 3.9876 25 6 11.2719 -2.9988 2.7504 26 6 10.2074 -2.1887 2.4019 27 6 5.7092 0.1756 1.7762 28 6 4.2108 0.1109 1.8300 29 8 3.6187 0.9424 2.4850 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.5956 1.9849 -0.8345 35 1 1.7624 1.9260 0.9365 36 1 3.1252 1.4442 -0.1022 37 1 1.6085 -1.7213 1.2931 38 1 1.7480 -0.1604 2.1372 39 1 3.4730 -2.1157 -0.4432 40 1 4.0710 -2.8245 1.0727 41 1 5.5077 -0.8821 -0.7773 42 1 6.0041 -2.5300 -0.3114 43 1 6.0977 -4.0923 4.1926 44 1 8.3812 -2.4521 5.2257 45 1 10.2731 -3.9023 5.8429 46 1 12.1269 -4.2484 4.2596 47 1 12.0851 -3.1502 2.0561 48 1 10.1888 -1.7074 1.4353 49 1 6.1050 0.2997 2.7842 50 1 6.0133 1.0191 1.1565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417442003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:01 Heat of formation + Delta-G solvation = -33.904191 kcal Electronic energy + Delta-G solvation = -32253.134719 eV Core-core repulsion = 28245.555133 eV Total energy + Delta-G solvation = -4007.579587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.39179 -38.92073 -37.57455 -36.35940 -35.35580 -33.95975 -33.18551 -30.99153 -29.73827 -29.65041 -27.78480 -27.19401 -27.14420 -25.06394 -24.13228 -23.14497 -21.27899 -20.59055 -20.24957 -19.28141 -17.88587 -17.25388 -16.75881 -16.21431 -15.58277 -15.57963 -15.24907 -14.82286 -14.75859 -14.47586 -14.25113 -13.95503 -13.70941 -13.45646 -13.20506 -12.91170 -12.77655 -12.55964 -12.36026 -12.25050 -12.11626 -12.00442 -11.80462 -11.75525 -11.45465 -11.23699 -11.15270 -11.04302 -10.98525 -10.94032 -10.79756 -10.66309 -10.37532 -10.10749 -9.80451 -9.60788 -9.40970 -8.71065 -8.43035 -8.40144 -7.82937 -7.76173 -7.43467 -6.25534 -4.40113 2.48210 2.59360 3.05492 3.18436 3.23771 3.26422 3.30406 3.77202 4.07212 4.25912 4.76685 4.88346 4.95453 4.96868 4.99240 5.03522 5.13669 5.41125 5.46570 5.48938 5.62786 5.66656 5.82140 5.83258 5.85472 5.88230 5.89609 5.91790 5.93284 6.01996 6.04047 6.18609 6.24366 6.27358 6.31200 6.41029 6.42352 6.60153 6.67062 6.72983 6.82970 7.06483 7.19570 7.26285 7.49015 7.56311 7.63780 7.73288 7.79525 8.10797 8.22115 8.28329 8.56252 8.64447 9.23854 9.48697 10.73156 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.003971 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.492748 B = 7049.254563 C = 7941.038104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.107 3.893 5 N -0.600 5.600 6 C 0.104 3.896 7 C 0.102 3.898 8 N -0.619 5.619 9 C 0.562 3.438 10 O -0.539 6.539 11 C 0.056 3.944 12 H 0.058 0.942 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.076 3.924 16 N -0.839 5.839 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.019 4.019 22 C -0.050 4.050 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.112 4.112 27 C 0.090 3.910 28 C 0.521 3.479 29 O -0.554 6.554 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.266 0.734 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.157 0.843 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 4.042 -7.498 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.196 4.196 4 C -0.017 4.017 5 N -0.332 5.332 6 C -0.020 4.020 7 C -0.021 4.021 8 N -0.356 5.356 9 C 0.353 3.647 10 O -0.414 6.414 11 C 0.035 3.965 12 H 0.076 0.924 13 C -0.578 4.578 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.472 5.472 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.020 4.020 22 C -0.068 4.068 23 C -0.168 4.168 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.130 4.130 27 C -0.036 4.036 28 C 0.310 3.690 29 O -0.432 6.432 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.174 0.826 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.176 3.661 -7.408 9.750 hybrid contribution -0.969 -0.446 0.606 1.227 sum -6.146 3.215 -6.802 9.714 Atomic orbital electron populations 1.21760 0.94840 1.01598 1.01905 1.21460 0.95662 0.97252 0.98499 1.21760 1.00819 0.95321 1.01650 1.21603 0.80424 1.00579 0.99049 1.47156 1.06494 1.27296 1.52278 1.21726 0.94906 0.89432 0.95897 1.21651 0.90580 1.01030 0.88881 1.47979 1.31290 1.25450 1.30890 1.21066 0.78250 0.83107 0.82274 1.90543 1.66064 1.23155 1.61612 1.17946 0.92057 0.93891 0.92629 0.92374 1.20685 1.24960 0.96176 1.15932 0.90900 1.24994 0.96270 0.95370 0.96599 1.70110 1.38797 0.99017 1.39246 0.86724 0.82167 0.77848 0.82540 1.20232 1.20988 1.19238 1.19762 0.93000 0.96163 0.93044 1.21371 0.95555 0.92705 0.97137 1.21055 0.95620 1.01113 0.99018 1.20793 0.98770 1.01417 0.95045 1.20760 0.98803 1.00104 0.96641 1.20863 0.94455 0.99415 0.98315 1.22161 0.89021 0.87226 1.05144 1.20434 0.90753 0.80194 0.77615 1.90658 1.71045 1.40124 1.41398 0.92484 0.92624 0.92763 0.91414 0.93468 0.91959 0.93131 0.91325 0.89165 0.90754 0.91357 0.91982 0.87814 0.92324 0.84617 0.88046 0.88174 0.88055 0.88123 0.82565 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.19 37.16 0.34 -0.99 16 2 C -0.11 -1.23 3.10 -90.62 -0.28 -1.51 16 3 C -0.14 -1.70 8.02 37.16 0.30 -1.40 16 4 C 0.11 1.48 4.81 -4.04 -0.02 1.46 16 5 N -0.60 -9.57 2.64 -175.04 -0.46 -10.03 16 6 C 0.10 1.53 6.51 -4.51 -0.03 1.50 16 7 C 0.10 1.61 6.53 -3.63 -0.02 1.59 16 8 N -0.62 -11.78 2.98 -174.37 -0.52 -12.30 16 9 C 0.56 12.61 5.50 -10.98 -0.06 12.54 16 10 O -0.54 -13.62 14.58 5.56 0.08 -13.54 16 11 C 0.06 1.26 1.96 -94.08 -0.18 1.07 16 12 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.54 -12.64 5.12 -34.44 -0.18 -12.82 16 14 H 0.07 1.69 7.51 -52.48 -0.39 1.29 16 15 C 0.08 1.84 3.42 -17.82 -0.06 1.78 16 16 N -0.84 -21.70 10.26 55.43 0.57 -21.13 16 17 Si 0.88 19.96 29.54 -169.99 -5.02 14.94 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.02 -0.43 4.47 -104.62 -0.47 -0.90 16 22 C -0.05 -1.15 7.79 -39.58 -0.31 -1.46 16 23 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 24 C -0.14 -2.74 10.05 -39.59 -0.40 -3.14 16 25 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 26 C -0.11 -2.41 8.57 -39.58 -0.34 -2.74 16 27 C 0.09 1.62 6.13 -5.20 -0.03 1.59 16 28 C 0.52 9.57 6.21 -11.91 -0.07 9.49 16 29 O -0.55 -11.34 15.06 5.56 0.08 -11.26 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.72 7.74 -51.93 -0.40 0.32 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 36 H 0.05 0.69 6.99 -51.93 -0.36 0.33 16 37 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 38 H 0.09 1.44 6.92 -51.93 -0.36 1.08 16 39 H 0.07 0.84 7.67 -51.93 -0.40 0.44 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.75 7.06 -51.93 -0.37 1.38 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.14 3.31 5.08 -52.49 -0.27 3.05 16 45 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 46 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 47 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 48 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 49 H 0.16 3.13 4.39 -51.93 -0.23 2.90 16 50 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -29.48 388.81 -9.83 -39.31 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.81 Total: 8.86 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.61 Total: -0.70 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.41 Total: -43.47 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.16 Total: -24.80 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.48 -9.83 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417442003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.405 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds