Wall clock time and date at job start Wed Apr 1 2020 03:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46924 * 2 1 4 4 C 1.53005 * 109.47042 * 119.99585 * 2 1 3 5 5 N 1.46496 * 109.47009 * 175.23471 * 4 2 1 6 6 C 1.45646 * 117.70938 * 275.67821 * 5 4 2 7 7 C 1.52984 * 110.77646 * 158.10136 * 6 5 4 8 8 N 1.47261 * 108.18637 * 46.72457 * 7 6 5 9 9 C 1.34782 * 121.35240 * 118.47831 * 8 7 6 10 10 O 1.21275 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99785 * 179.97438 * 9 8 7 12 12 H 1.08994 * 109.47312 * 299.99604 * 11 9 8 13 13 C 1.50696 * 109.47247 * 59.99989 * 11 9 8 14 14 H 1.08003 * 119.99837 * 234.74019 * 13 11 9 15 15 C 1.37876 * 120.00338 * 54.46566 * 13 11 9 16 16 N 1.31520 * 119.99758 * 2.01398 * 15 13 11 17 17 Si 1.86795 * 120.00173 * 182.01375 * 15 13 11 18 18 H 1.48499 * 109.47076 * 89.99906 * 17 15 13 19 19 H 1.48501 * 109.47144 * 209.99641 * 17 15 13 20 20 H 1.48497 * 109.47417 * 330.00128 * 17 15 13 21 21 C 1.50706 * 109.46877 * 179.97438 * 11 9 8 22 22 C 1.38247 * 119.99542 * 242.11135 * 21 11 9 23 23 C 1.38234 * 119.99234 * 179.78637 * 22 21 11 24 24 C 1.38233 * 120.00362 * 0.43966 * 23 22 21 25 25 C 1.38231 * 120.00086 * 359.81088 * 24 23 22 26 26 C 1.38232 * 120.00304 * 62.38120 * 21 11 9 27 27 C 1.47047 * 117.29549 * 298.74600 * 8 7 6 28 28 C 1.33382 * 117.70328 * 95.69861 * 5 4 2 29 29 O 1.21279 * 118.48995 * 4.32097 * 28 5 4 30 30 H 1.08998 * 109.47650 * 300.00193 * 1 2 3 31 31 H 1.09002 * 109.47442 * 60.00267 * 1 2 3 32 32 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47389 * 239.99346 * 2 1 3 34 34 H 1.09003 * 109.47087 * 305.70264 * 3 2 1 35 35 H 1.08991 * 109.47699 * 65.70297 * 3 2 1 36 36 H 1.09006 * 109.47148 * 185.70649 * 3 2 1 37 37 H 1.09004 * 109.46833 * 55.23392 * 4 2 1 38 38 H 1.08996 * 109.46900 * 295.23646 * 4 2 1 39 39 H 1.08998 * 109.21601 * 37.76591 * 6 5 4 40 40 H 1.09004 * 109.18144 * 278.41370 * 6 5 4 41 41 H 1.09000 * 109.72022 * 287.05166 * 7 6 5 42 42 H 1.08997 * 109.71995 * 166.40201 * 7 6 5 43 43 H 0.96997 * 119.99404 * 179.97438 * 16 15 13 44 44 H 1.07997 * 119.99829 * 359.97438 * 22 21 11 45 45 H 1.08004 * 119.99523 * 180.27280 * 23 22 21 46 46 H 1.08008 * 119.99825 * 179.83278 * 24 23 22 47 47 H 1.07995 * 119.99784 * 179.97438 * 25 24 23 48 48 H 1.07993 * 119.99759 * 359.97438 * 26 21 11 49 49 H 1.09000 * 109.57234 * 162.31354 * 27 8 7 50 50 H 1.08999 * 109.56796 * 282.66813 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5004 -0.8213 1.1933 6 6 4.0749 -1.9321 0.4468 7 6 5.5121 -1.6180 0.0267 8 7 6.2238 -1.0733 1.1951 9 6 7.2999 -1.6970 1.7143 10 8 7.7003 -2.7290 1.2188 11 6 8.0056 -1.1121 2.9105 12 1 8.3721 -0.1155 2.6646 13 6 7.0437 -1.0224 4.0670 14 1 6.8860 -0.0777 4.5662 15 6 6.3606 -2.1451 4.4843 16 7 6.5780 -3.3025 3.8988 17 14 5.1265 -2.0221 5.8811 18 1 3.7829 -1.7139 5.3288 19 1 5.0766 -3.3135 6.6126 20 1 5.5387 -0.9413 6.8122 21 6 9.1662 -1.9951 3.2904 22 6 9.1923 -2.6072 4.5297 23 6 10.2548 -3.4206 4.8764 24 6 11.2955 -3.6149 3.9876 25 6 11.2719 -2.9988 2.7504 26 6 10.2074 -2.1887 2.4019 27 6 5.7092 0.1756 1.7762 28 6 4.2108 0.1109 1.8300 29 8 3.6187 0.9424 2.4850 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.5956 1.9849 -0.8345 35 1 1.7624 1.9260 0.9365 36 1 3.1252 1.4442 -0.1022 37 1 1.6085 -1.7213 1.2931 38 1 1.7480 -0.1604 2.1372 39 1 3.4730 -2.1157 -0.4432 40 1 4.0710 -2.8245 1.0727 41 1 5.5077 -0.8821 -0.7773 42 1 6.0041 -2.5300 -0.3114 43 1 6.0977 -4.0923 4.1926 44 1 8.3812 -2.4521 5.2257 45 1 10.2731 -3.9023 5.8429 46 1 12.1269 -4.2484 4.2596 47 1 12.0851 -3.1502 2.0561 48 1 10.1888 -1.7074 1.4353 49 1 6.1050 0.2997 2.7842 50 1 6.0133 1.0191 1.1565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417442003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:59 Heat of formation + Delta-G solvation = -49.005338 kcal Electronic energy + Delta-G solvation = -32253.789554 eV Core-core repulsion = 28245.555133 eV Total energy + Delta-G solvation = -4008.234421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.80393 -40.53571 -39.16467 -37.61036 -36.75439 -35.73112 -34.50982 -32.72850 -31.28163 -31.09976 -29.29841 -28.71266 -28.03523 -26.35753 -25.78429 -24.58092 -22.90641 -22.14400 -21.32608 -20.77361 -19.34026 -18.92633 -18.19018 -17.69106 -17.11593 -16.99183 -16.86857 -16.50709 -16.12536 -15.79898 -15.57234 -15.41677 -15.33782 -14.70731 -14.56631 -14.47206 -14.16714 -13.99731 -13.86908 -13.70083 -13.42584 -13.37457 -13.11170 -13.04057 -12.86163 -12.75196 -12.70716 -12.60894 -12.39690 -12.16025 -12.09422 -11.87587 -11.82046 -11.61635 -11.45121 -11.21519 -11.06278 -10.57720 -10.21615 -9.69040 -9.39266 -9.34280 -9.08286 -8.15882 -6.30216 0.86566 0.97025 1.30563 1.38222 1.42800 1.62157 1.94019 2.17100 2.33338 2.54366 3.10156 3.33718 3.55016 3.85272 3.89332 3.95939 4.13302 4.17938 4.28585 4.34311 4.37930 4.46465 4.49765 4.51687 4.53847 4.66206 4.69934 4.77493 4.81964 4.85530 4.87971 4.92949 4.98701 5.01344 5.02968 5.05205 5.18635 5.19393 5.32584 5.43109 5.44495 5.52919 5.57740 5.63727 5.80286 5.89863 5.92178 6.00930 6.41173 6.44202 6.53282 6.60783 6.82391 7.15970 7.33757 7.78805 8.81665 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.003971 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.492748 B = 7049.254563 C = 7941.038104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C -0.134 4.134 4 C 0.103 3.897 5 N -0.597 5.597 6 C 0.109 3.891 7 C 0.100 3.900 8 N -0.619 5.619 9 C 0.562 3.438 10 O -0.572 6.572 11 C 0.048 3.952 12 H 0.069 0.931 13 C -0.528 4.528 14 H 0.070 0.930 15 C 0.054 3.946 16 N -0.861 5.861 17 Si 0.919 3.081 18 H -0.293 1.293 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.041 4.041 22 C -0.076 4.076 23 C -0.158 4.158 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.126 4.126 27 C 0.091 3.909 28 C 0.516 3.484 29 O -0.583 6.583 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.258 0.742 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.105 0.895 49 H 0.135 0.865 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 3.901 -9.313 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 C -0.192 4.192 4 C -0.020 4.020 5 N -0.329 5.329 6 C -0.014 4.014 7 C -0.023 4.023 8 N -0.354 5.354 9 C 0.354 3.646 10 O -0.451 6.451 11 C 0.027 3.973 12 H 0.087 0.913 13 C -0.566 4.566 14 H 0.088 0.912 15 C -0.152 4.152 16 N -0.495 5.495 17 Si 0.746 3.254 18 H -0.219 1.219 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.042 4.042 22 C -0.094 4.094 23 C -0.176 4.176 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.144 4.144 27 C -0.035 4.035 28 C 0.305 3.695 29 O -0.463 6.463 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.155 0.845 47 H 0.152 0.848 48 H 0.123 0.877 49 H 0.152 0.848 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.194 3.535 -9.231 11.166 hybrid contribution -0.956 -0.358 1.160 1.545 sum -6.149 3.176 -8.071 10.632 Atomic orbital electron populations 1.21735 0.93147 1.02533 1.02291 1.21414 0.96958 0.96159 0.97448 1.21716 0.99936 0.96253 1.01266 1.21777 0.79133 1.01496 0.99555 1.47241 1.07461 1.26652 1.51500 1.21770 0.95068 0.87723 0.96878 1.21883 0.90503 1.01451 0.88419 1.47938 1.30555 1.25492 1.31459 1.20919 0.78960 0.82677 0.82082 1.90509 1.67345 1.24514 1.62709 1.18028 0.92100 0.94653 0.92512 0.91276 1.20778 1.24366 0.95656 1.15818 0.91232 1.25273 0.97102 0.95276 0.97515 1.70218 1.39727 0.99147 1.40426 0.86149 0.80226 0.77620 0.81409 1.21943 1.21125 1.18817 1.19884 0.93742 0.96998 0.93571 1.21307 0.96235 0.94613 0.97225 1.21325 0.95408 1.00550 1.00299 1.21190 0.99096 1.01057 0.94396 1.21171 0.98893 0.98768 0.97362 1.21022 0.94816 1.00230 0.98327 1.22116 0.89011 0.87748 1.04597 1.20457 0.90843 0.80541 0.77679 1.90647 1.71456 1.41486 1.42740 0.93300 0.91073 0.91582 0.89669 0.91426 0.94222 0.94651 0.89740 0.91794 0.86198 0.93940 0.88528 0.88903 0.93251 0.86784 0.86242 0.84533 0.84782 0.87653 0.84757 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.19 71.98 0.66 -1.56 16 2 C -0.10 -2.02 3.10 -10.79 -0.03 -2.05 16 3 C -0.13 -3.10 8.02 71.98 0.58 -2.52 16 4 C 0.10 2.72 4.81 86.38 0.42 3.14 16 5 N -0.60 -18.44 2.64 -826.88 -2.18 -20.62 16 6 C 0.11 2.99 6.51 86.53 0.56 3.55 16 7 C 0.10 2.99 6.53 86.23 0.56 3.55 16 8 N -0.62 -23.31 2.98 -823.97 -2.46 -25.77 16 9 C 0.56 25.45 5.50 87.66 0.48 25.93 16 10 O -0.57 -29.28 14.58 -3.01 -0.04 -29.33 16 11 C 0.05 2.20 1.96 -13.03 -0.03 2.18 16 12 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 13 C -0.53 -25.37 5.12 25.60 0.13 -25.23 16 14 H 0.07 3.31 7.51 -2.91 -0.02 3.29 16 15 C 0.05 2.67 3.42 84.65 0.29 2.96 16 16 N -0.86 -45.78 10.26 21.45 0.22 -45.56 16 17 Si 0.92 42.13 29.54 68.60 2.03 44.16 16 18 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 C -0.04 -1.91 4.47 -19.86 -0.09 -2.00 16 22 C -0.08 -3.55 7.79 22.27 0.17 -3.38 16 23 C -0.16 -6.42 10.05 22.27 0.22 -6.19 16 24 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 25 C -0.14 -5.34 10.05 22.27 0.22 -5.12 16 26 C -0.13 -5.32 8.57 22.27 0.19 -5.13 16 27 C 0.09 3.24 6.13 85.33 0.52 3.76 16 28 C 0.52 18.86 6.21 87.68 0.54 19.40 16 29 O -0.58 -24.25 15.06 -3.02 -0.05 -24.30 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.46 7.74 -2.39 -0.02 1.45 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.08 7.85 -2.39 -0.02 1.06 16 36 H 0.03 0.91 6.99 -2.38 -0.02 0.89 16 37 H 0.08 1.95 8.06 -2.38 -0.02 1.93 16 38 H 0.06 2.05 6.92 -2.39 -0.02 2.04 16 39 H 0.12 2.24 7.67 -2.39 -0.02 2.22 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 3.04 7.06 -2.39 -0.02 3.02 16 43 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 44 H 0.11 5.76 5.08 -2.91 -0.01 5.74 16 45 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 46 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 47 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 48 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 49 H 0.14 5.47 4.39 -2.39 -0.01 5.46 16 50 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -65.87 388.81 4.09 -61.78 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.93 Total: 33.17 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.64 Total: 6.46 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -4.42 Total: -91.95 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.09 Total: -53.63 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -65.87 4.09 -61.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417442003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds