Wall clock time and date at job start Wed Apr 1 2020 03:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47358 * 2 1 4 4 C 1.52999 * 109.47346 * 239.99296 * 2 1 3 5 5 N 1.46499 * 109.47097 * 119.99517 * 2 1 3 6 6 C 1.46762 * 124.35418 * 179.97438 * 5 2 1 7 7 C 1.54478 * 105.47540 * 196.99573 * 6 5 2 8 8 C 1.54622 * 101.76627 * 334.58284 * 7 6 5 9 9 H 1.08996 * 110.60507 * 266.06380 * 8 7 6 10 10 N 1.46507 * 110.48666 * 143.47352 * 8 7 6 11 11 C 1.34775 * 119.99805 * 158.77110 * 10 8 7 12 12 O 1.21277 * 120.00417 * 359.72751 * 11 10 8 13 13 C 1.50702 * 119.99586 * 179.72654 * 11 10 8 14 14 H 1.09004 * 109.47026 * 60.00507 * 13 11 10 15 15 C 1.50694 * 109.47346 * 300.00167 * 13 11 10 16 16 H 1.07997 * 120.00088 * 324.88006 * 15 13 11 17 17 C 1.37879 * 120.00171 * 144.87958 * 15 13 11 18 18 N 1.31516 * 119.99916 * 5.19314 * 17 15 13 19 19 Si 1.86800 * 119.99992 * 185.19321 * 17 15 13 20 20 H 1.48500 * 109.47356 * 90.00170 * 19 17 15 21 21 H 1.48505 * 109.46970 * 210.00413 * 19 17 15 22 22 H 1.48504 * 109.47159 * 329.99764 * 19 17 15 23 23 C 1.50701 * 109.46954 * 180.02562 * 13 11 10 24 24 C 1.38238 * 119.99684 * 66.01164 * 23 13 11 25 25 C 1.38236 * 119.99510 * 179.81167 * 24 23 13 26 26 C 1.38238 * 120.00206 * 0.39465 * 25 24 23 27 27 C 1.38231 * 119.99718 * 359.86016 * 26 25 24 28 28 C 1.38232 * 120.00424 * 359.95415 * 27 26 25 29 29 C 1.34422 * 124.34872 * 359.97438 * 5 2 1 30 30 O 1.21281 * 124.94098 * 359.64390 * 29 5 2 31 31 H 1.09004 * 109.47350 * 300.00429 * 1 2 3 32 32 H 1.08999 * 109.46993 * 60.00584 * 1 2 3 33 33 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47185 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46592 * 299.99662 * 3 2 1 36 36 H 1.08996 * 109.47541 * 59.99626 * 3 2 1 37 37 H 1.08996 * 109.47403 * 300.00633 * 4 2 1 38 38 H 1.09003 * 109.46609 * 60.00437 * 4 2 1 39 39 H 1.08999 * 109.47494 * 180.02562 * 4 2 1 40 40 H 1.08997 * 110.24410 * 315.99847 * 6 5 2 41 41 H 1.09008 * 110.24476 * 77.90824 * 6 5 2 42 42 H 1.09002 * 110.96652 * 216.46256 * 7 6 5 43 43 H 1.09005 * 110.96790 * 92.70634 * 7 6 5 44 44 H 0.96999 * 119.99829 * 338.50522 * 10 8 7 45 45 H 0.97001 * 119.99685 * 179.97438 * 18 17 15 46 46 H 1.07993 * 120.00285 * 359.97438 * 24 23 13 47 47 H 1.08005 * 119.99929 * 180.23356 * 25 24 23 48 48 H 1.08001 * 120.00033 * 179.83395 * 26 25 24 49 49 H 1.08003 * 119.99878 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00215 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 2.0183 -0.6905 1.1962 6 6 3.4366 -0.8794 1.5224 7 6 3.4691 -1.9970 2.5884 8 6 2.0641 -1.8699 3.2214 9 1 2.0973 -1.2304 4.1035 10 7 1.5362 -3.1919 3.5676 11 6 0.5599 -3.3074 4.4896 12 8 0.1219 -2.3174 5.0362 13 6 0.0126 -4.6668 4.8412 14 1 0.8163 -5.2929 5.2288 15 6 -0.5728 -5.3067 3.6088 16 1 -1.0705 -4.6977 2.8687 17 6 -0.4731 -6.6697 3.4262 18 7 0.0412 -7.4241 4.3728 19 14 -1.0684 -7.4448 1.8342 20 1 0.0469 -7.4823 0.8545 21 1 -1.5384 -8.8277 2.1024 22 1 -2.1871 -6.6405 1.2802 23 6 -1.0607 -4.5205 5.8888 24 6 -2.2418 -3.8709 5.5822 25 6 -3.2280 -3.7402 6.5421 26 6 -3.0297 -4.2518 7.8109 27 6 -1.8465 -4.8967 8.1189 28 6 -0.8619 -5.0309 7.1580 29 6 1.2247 -1.2325 2.1362 30 8 0.0122 -1.2136 2.1168 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6766 -1.7490 -1.2491 38 1 1.6767 -0.2075 -2.1391 39 1 3.1300 -0.7218 -1.2489 40 1 3.9898 -1.1880 0.6354 41 1 3.8566 0.0417 1.9267 42 1 4.2483 -1.8089 3.3271 43 1 3.6012 -2.9746 2.1247 44 1 1.8866 -3.9838 3.1305 45 1 0.1110 -8.3831 4.2444 46 1 -2.3952 -3.4679 4.5921 47 1 -4.1523 -3.2360 6.3015 48 1 -3.7991 -4.1473 8.5616 49 1 -1.6915 -5.2961 9.1103 50 1 0.0623 -5.5351 7.3986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461160849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:25 Heat of formation + Delta-G solvation = -45.454634 kcal Electronic energy + Delta-G solvation = -31349.090125 eV Core-core repulsion = 27341.009674 eV Total energy + Delta-G solvation = -4008.080451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.77101 -38.94099 -37.65157 -36.48945 -35.86436 -33.59456 -33.02464 -31.02514 -29.84920 -29.54050 -27.83131 -27.50339 -27.27003 -26.22092 -23.80263 -22.33036 -21.56429 -21.38673 -20.50319 -19.32401 -18.44483 -16.86748 -16.65032 -16.52271 -15.90924 -15.68770 -15.34567 -14.79174 -14.46699 -14.30135 -14.16765 -13.94873 -13.79156 -13.75617 -13.24785 -13.00679 -12.87305 -12.69105 -12.44934 -12.37084 -12.23657 -12.14820 -11.95507 -11.85740 -11.71347 -11.57740 -11.50096 -11.29145 -11.09318 -11.01642 -10.99839 -10.92602 -10.34591 -10.18437 -9.94291 -9.54882 -9.34724 -8.73789 -8.62226 -8.53975 -8.19391 -7.85978 -7.52715 -6.23163 -4.28092 2.45681 2.48426 2.80161 2.98795 3.20822 3.29279 3.34511 3.77420 3.99877 4.31445 4.43912 4.51650 4.75492 4.79519 4.89337 4.92875 4.95891 5.00980 5.14018 5.28805 5.36842 5.47272 5.50906 5.57272 5.66500 5.74153 5.76004 5.79249 5.86344 5.86632 5.89641 5.90613 5.98184 6.20163 6.28983 6.38708 6.40329 6.58364 6.68060 6.76143 6.92521 7.05043 7.10405 7.24339 7.30171 7.45075 7.53524 7.70513 7.82811 8.03196 8.15019 8.35772 8.50295 8.77782 9.28676 9.37820 10.85153 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.003789 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.019604 B = 7388.539779 C = 8438.784509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.175 3.825 3 C -0.156 4.156 4 C -0.157 4.157 5 N -0.619 5.619 6 C 0.107 3.893 7 C -0.138 4.138 8 C 0.118 3.882 9 H 0.115 0.885 10 N -0.714 5.714 11 C 0.532 3.468 12 O -0.554 6.554 13 C 0.053 3.947 14 H 0.088 0.912 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.879 5.879 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.009 4.009 24 C -0.082 4.082 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.505 3.495 30 O -0.496 6.496 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.407 0.593 45 H 0.266 0.734 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 11.213 -6.615 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.091 3.909 3 C -0.214 4.214 4 C -0.215 4.215 5 N -0.357 5.357 6 C -0.017 4.017 7 C -0.176 4.176 8 C 0.008 3.992 9 H 0.133 0.867 10 N -0.368 5.368 11 C 0.322 3.678 12 O -0.431 6.431 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.131 4.131 18 N -0.515 5.515 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.010 4.010 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.152 4.152 28 C -0.136 4.136 29 C 0.290 3.710 30 O -0.368 6.368 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.243 0.757 45 H 0.076 0.924 46 H 0.130 0.870 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.481 11.757 -6.220 15.775 hybrid contribution -0.099 -0.934 -1.162 1.494 sum 8.382 10.823 -7.382 15.553 Atomic orbital electron populations 1.22097 0.92149 1.03890 1.01773 1.20400 0.95389 0.91238 0.83857 1.22182 1.01185 0.95512 1.02501 1.22184 1.01187 1.01308 0.96845 1.48423 1.07004 1.57595 1.22631 1.21944 0.82713 0.98431 0.98571 1.22899 0.96587 0.99894 0.98251 1.21419 0.91927 0.88588 0.97300 0.86745 1.45759 1.41037 1.06291 1.43709 1.21684 0.76755 0.92772 0.76576 1.90592 1.58534 1.40524 1.53425 1.18096 0.94800 0.89159 0.94747 0.89403 1.20727 1.38295 0.92261 1.03487 0.91821 1.24955 0.94404 0.97130 0.96618 1.69923 1.43884 1.05624 1.32075 0.86511 0.79325 0.78599 0.83223 1.20452 1.21069 1.19629 1.19992 0.95691 0.92408 0.92871 1.20861 0.93110 0.97545 0.98534 1.20955 0.98849 1.01479 0.94023 1.20784 0.97574 1.01812 0.96562 1.20879 0.94639 1.01019 0.98617 1.20966 0.98932 1.00610 0.93135 1.21452 0.88080 0.78126 0.83343 1.90750 1.12643 1.57019 1.76406 0.91212 0.92761 0.91049 0.92404 0.91537 0.92167 0.91962 0.91514 0.92392 0.90473 0.91238 0.88630 0.89190 0.75677 0.92447 0.87029 0.87666 0.87792 0.87635 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.00 37.15 0.26 -1.67 16 2 C 0.17 1.97 1.20 -131.82 -0.16 1.81 16 3 C -0.16 -1.38 8.54 37.16 0.32 -1.07 16 4 C -0.16 -1.48 8.49 37.16 0.32 -1.16 16 5 N -0.62 -7.80 2.76 -157.58 -0.43 -8.24 16 6 C 0.11 0.95 6.60 -3.12 -0.02 0.93 16 7 C -0.14 -1.35 6.86 -25.10 -0.17 -1.52 16 8 C 0.12 1.80 3.23 -67.94 -0.22 1.58 16 9 H 0.11 1.85 7.66 -51.93 -0.40 1.45 16 10 N -0.71 -13.24 5.05 -53.82 -0.27 -13.51 16 11 C 0.53 12.16 6.99 -10.99 -0.08 12.08 16 12 O -0.55 -14.01 15.12 5.56 0.08 -13.92 16 13 C 0.05 1.29 2.38 -94.08 -0.22 1.07 16 14 H 0.09 2.21 7.13 -51.93 -0.37 1.84 16 15 C -0.51 -13.19 7.47 -34.44 -0.26 -13.45 16 16 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 17 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 18 N -0.88 -23.38 12.84 55.43 0.71 -22.67 16 19 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.01 -0.21 4.30 -104.62 -0.45 -0.66 16 24 C -0.08 -1.98 8.31 -39.58 -0.33 -2.31 16 25 C -0.13 -2.84 10.05 -39.58 -0.40 -3.24 16 26 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 27 C -0.13 -2.68 10.05 -39.59 -0.40 -3.08 16 28 C -0.12 -2.67 9.67 -39.58 -0.38 -3.05 16 29 C 0.50 8.61 7.47 -10.86 -0.08 8.52 16 30 O -0.50 -10.73 13.95 5.56 0.08 -10.65 16 31 H 0.07 1.10 7.06 -51.93 -0.37 0.73 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.17 7.08 -51.93 -0.37 0.80 16 34 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.46 7.21 -51.93 -0.37 0.08 16 40 H 0.08 0.55 7.12 -51.93 -0.37 0.18 16 41 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.84 7.80 -51.93 -0.41 0.44 16 44 H 0.41 7.08 8.27 -40.82 -0.34 6.74 16 45 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.11 2.81 7.89 -52.49 -0.41 2.39 16 47 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 48 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 49 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 50 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -32.73 405.06 -9.52 -42.26 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.00 Total: 11.90 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.77 Total: -6.72 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.01 Total: -44.42 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.16 Total: -24.57 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.73 -9.52 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461160849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.198 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds