Wall clock time and date at job start Wed Apr 1 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 C 1.53000 * 109.47028 * 120.00018 * 2 1 3 5 5 N 1.46496 * 109.47142 * 239.99500 * 2 1 3 6 6 C 1.46766 * 124.34585 * 60.00231 * 5 2 1 7 7 C 1.54481 * 105.47120 * 197.01469 * 6 5 2 8 8 C 1.54632 * 101.76694 * 334.58226 * 7 6 5 9 9 H 1.09004 * 110.48427 * 143.47106 * 8 7 6 10 10 N 1.46493 * 110.49014 * 265.98794 * 8 7 6 11 11 C 1.34774 * 120.00281 * 204.99777 * 10 8 7 12 12 O 1.21279 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.50695 * 120.00303 * 179.97438 * 11 10 8 14 14 H 1.08996 * 109.47316 * 300.00160 * 13 11 10 15 15 C 1.50702 * 109.47133 * 60.00418 * 13 11 10 16 16 H 1.08007 * 120.00162 * 235.36111 * 15 13 11 17 17 C 1.37872 * 120.00099 * 55.35290 * 15 13 11 18 18 N 1.31518 * 119.99909 * 1.99740 * 17 15 13 19 19 Si 1.86796 * 120.00409 * 182.00109 * 17 15 13 20 20 H 1.48501 * 109.47185 * 59.99902 * 19 17 15 21 21 H 1.48496 * 109.47572 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47149 * 300.00433 * 19 17 15 23 23 C 1.50701 * 109.47212 * 180.02562 * 13 11 10 24 24 C 1.38232 * 120.00035 * 226.92059 * 23 13 11 25 25 C 1.38236 * 120.00164 * 179.76802 * 24 23 13 26 26 C 1.38241 * 119.99461 * 0.50606 * 25 24 23 27 27 C 1.38231 * 120.00256 * 359.74941 * 26 25 24 28 28 C 1.38233 * 119.99873 * 359.97438 * 27 26 25 29 29 C 1.34418 * 124.35036 * 239.69942 * 5 2 1 30 30 O 1.21274 * 124.94342 * 359.58067 * 29 5 2 31 31 H 1.09001 * 109.46868 * 60.00038 * 1 2 3 32 32 H 1.08997 * 109.46807 * 300.00171 * 1 2 3 33 33 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47003 * 59.99880 * 3 2 1 35 35 H 1.09005 * 109.46791 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.46891 * 299.99318 * 3 2 1 37 37 H 1.08998 * 109.47503 * 59.99458 * 4 2 1 38 38 H 1.09001 * 109.47332 * 180.02562 * 4 2 1 39 39 H 1.09007 * 109.46884 * 300.00045 * 4 2 1 40 40 H 1.08993 * 110.24843 * 316.01737 * 6 5 2 41 41 H 1.08999 * 110.24771 * 78.01903 * 6 5 2 42 42 H 1.09002 * 110.97094 * 92.70646 * 7 6 5 43 43 H 1.09005 * 110.96938 * 216.42805 * 7 6 5 44 44 H 0.97006 * 119.99598 * 24.99689 * 10 8 7 45 45 H 0.97006 * 120.00257 * 179.97438 * 18 17 15 46 46 H 1.07999 * 120.00224 * 0.02562 * 24 23 13 47 47 H 1.08000 * 120.00696 * 180.22815 * 25 24 23 48 48 H 1.07998 * 119.99704 * 179.72173 * 26 25 24 49 49 H 1.08001 * 119.99794 * 179.97438 * 27 26 25 50 50 H 1.08002 * 120.00354 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0184 -0.6907 -1.1961 6 6 1.7232 -0.2733 -2.5718 7 6 2.0550 -1.4972 -3.4540 8 6 3.0996 -2.2372 -2.5866 9 1 2.9763 -3.3164 -2.6786 10 7 4.4571 -1.8429 -2.9708 11 6 5.4916 -2.6753 -2.7397 12 8 5.2985 -3.7510 -2.2140 13 6 6.8880 -2.2699 -3.1354 14 1 6.9249 -2.0963 -4.2108 15 6 7.2689 -1.0056 -2.4091 16 1 7.5947 -0.1398 -2.9666 17 6 7.2012 -0.9540 -1.0330 18 7 6.8421 -2.0202 -0.3519 19 14 7.6196 0.6301 -0.1359 20 1 6.7007 1.7085 -0.5809 21 1 7.4695 0.4251 1.3271 22 1 9.0207 1.0166 -0.4410 23 6 7.8525 -3.3690 -2.7711 24 6 9.0308 -3.0653 -2.1152 25 6 9.9133 -4.0741 -1.7767 26 6 9.6222 -5.3854 -2.1035 27 6 8.4464 -5.6885 -2.7642 28 6 7.5613 -4.6803 -3.0975 29 6 2.7991 -1.7847 -1.1745 30 8 3.2017 -2.3311 -0.1695 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6767 -1.7489 1.2493 38 1 3.1300 -0.7209 1.2495 39 1 1.6766 -0.2074 2.1392 40 1 0.6693 -0.0128 -2.6691 41 1 2.3493 0.5740 -2.8515 42 1 1.1712 -2.1152 -3.6123 43 1 2.4869 -1.1867 -4.4055 44 1 4.6115 -0.9826 -3.3916 45 1 6.7948 -1.9841 0.6164 46 1 9.2600 -2.0404 -1.8634 47 1 10.8321 -3.8373 -1.2610 48 1 10.3138 -6.1730 -1.8431 49 1 8.2194 -6.7129 -3.0198 50 1 6.6428 -4.9170 -3.6140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461160859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:40 Heat of formation + Delta-G solvation = -56.587862 kcal Electronic energy + Delta-G solvation = -32299.730229 eV Core-core repulsion = 28291.167005 eV Total energy + Delta-G solvation = -4008.563224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.86939 -40.51331 -39.04297 -37.66761 -36.98619 -35.46136 -34.10299 -32.62235 -31.34580 -30.59970 -29.17464 -28.49418 -28.24305 -27.50444 -25.67132 -23.13669 -22.99966 -22.65192 -21.76374 -21.04602 -19.53129 -18.67938 -17.92869 -17.47156 -17.23712 -16.93498 -16.64057 -16.24595 -16.02393 -15.56567 -15.36407 -15.24227 -15.01690 -14.84646 -14.76224 -14.28510 -14.02861 -13.96079 -13.86390 -13.78524 -13.67893 -13.29812 -13.05517 -13.01128 -12.83171 -12.75485 -12.68155 -12.64765 -12.39870 -12.27256 -12.18502 -11.99927 -11.97849 -11.79391 -11.42302 -11.17136 -10.82149 -10.61985 -10.14211 -9.55857 -9.48044 -9.36774 -9.08554 -8.05021 -6.24766 0.88255 0.93626 1.34430 1.37099 1.43910 1.58424 2.03931 2.34540 2.50664 2.86172 3.22606 3.37057 3.49843 3.55886 3.88991 3.89881 4.01124 4.08845 4.25167 4.33676 4.35499 4.49920 4.54911 4.57809 4.60495 4.66689 4.69816 4.74931 4.80283 4.85192 4.89947 4.91426 5.01048 5.02699 5.07802 5.13272 5.14172 5.18760 5.25646 5.37305 5.46513 5.54911 5.67730 5.84153 5.87050 5.90387 5.96041 5.99247 6.26800 6.43227 6.53546 6.76304 7.06658 7.39045 7.43768 7.96233 8.90542 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.004341 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.887685 B = 6448.284704 C = 7415.157728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.167 3.833 3 C -0.151 4.151 4 C -0.132 4.132 5 N -0.612 5.612 6 C 0.098 3.902 7 C -0.121 4.121 8 C 0.115 3.885 9 H 0.084 0.916 10 N -0.708 5.708 11 C 0.549 3.451 12 O -0.574 6.574 13 C 0.051 3.949 14 H 0.075 0.925 15 C -0.535 4.535 16 H 0.074 0.926 17 C 0.042 3.958 18 N -0.855 5.855 19 Si 0.928 3.072 20 H -0.266 1.266 21 H -0.309 1.309 22 H -0.263 1.263 23 C -0.034 4.034 24 C -0.088 4.088 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.118 4.118 29 C 0.491 3.509 30 O -0.558 6.558 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.020 0.980 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.409 0.591 45 H 0.247 0.753 46 H 0.111 0.889 47 H 0.125 0.875 48 H 0.137 0.863 49 H 0.129 0.871 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 7.175 -7.558 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.084 3.916 3 C -0.209 4.209 4 C -0.190 4.190 5 N -0.347 5.347 6 C -0.023 4.023 7 C -0.158 4.158 8 C 0.005 3.995 9 H 0.102 0.898 10 N -0.362 5.362 11 C 0.338 3.662 12 O -0.452 6.452 13 C 0.029 3.971 14 H 0.093 0.907 15 C -0.573 4.573 16 H 0.092 0.908 17 C -0.164 4.164 18 N -0.488 5.488 19 Si 0.756 3.244 20 H -0.191 1.191 21 H -0.236 1.236 22 H -0.188 1.188 23 C -0.035 4.035 24 C -0.106 4.106 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.165 4.165 28 C -0.136 4.136 29 C 0.276 3.724 30 O -0.434 6.434 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.245 0.755 45 H 0.056 0.944 46 H 0.129 0.871 47 H 0.143 0.857 48 H 0.155 0.845 49 H 0.147 0.853 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.481 6.073 -6.389 15.280 hybrid contribution 0.646 0.829 1.354 1.714 sum -11.835 6.901 -5.035 14.596 Atomic orbital electron populations 1.22084 0.91334 1.02430 1.04266 1.20587 0.95644 0.92103 0.83272 1.22151 0.99845 0.94631 1.04255 1.21950 0.99725 0.99876 0.97417 1.48562 1.50362 1.27864 1.07948 1.22341 1.03709 0.97544 0.78725 1.22959 0.98072 0.96189 0.98617 1.21495 0.85104 1.00953 0.91912 0.89838 1.45489 1.04710 1.21946 1.64043 1.21145 0.87232 0.82457 0.75321 1.90543 1.85486 1.25838 1.43371 1.17978 0.87810 0.93935 0.97326 0.90724 1.20792 1.48168 0.97388 0.90932 0.90758 1.25543 0.94831 0.97418 0.98633 1.70226 1.43790 1.28608 1.06191 0.86061 0.79517 0.81951 0.76919 1.19128 1.23603 1.18778 1.19953 0.94430 0.93897 0.95231 1.21123 0.94003 0.99217 0.96225 1.21309 1.00205 0.93643 1.01996 1.21164 0.97843 0.96454 1.00602 1.21195 0.95187 0.98975 1.01187 1.21052 0.97888 0.93412 1.01270 1.21891 0.77256 0.80962 0.92271 1.90734 1.53425 1.60370 1.38837 0.89636 0.89842 0.93207 0.89695 0.95657 0.89639 0.93892 0.96040 0.90466 0.86675 0.90286 0.86728 0.85937 0.75540 0.94417 0.87105 0.85744 0.84524 0.85303 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.49 71.98 0.61 -1.87 16 2 C 0.17 4.35 1.20 3.61 0.00 4.35 16 3 C -0.15 -3.43 8.54 71.98 0.61 -2.82 16 4 C -0.13 -4.51 6.99 71.98 0.50 -4.00 16 5 N -0.61 -17.63 2.76 -771.03 -2.13 -19.76 16 6 C 0.10 1.76 6.59 86.83 0.57 2.33 16 7 C -0.12 -2.23 6.78 31.65 0.21 -2.01 16 8 C 0.11 3.95 3.29 44.99 0.15 4.10 16 9 H 0.08 3.28 7.55 -2.39 -0.02 3.27 16 10 N -0.71 -27.43 4.99 -442.56 -2.21 -29.64 16 11 C 0.55 26.69 5.45 87.66 0.48 27.17 16 12 O -0.57 -32.79 13.60 -3.03 -0.04 -32.83 16 13 C 0.05 2.42 2.77 -13.03 -0.04 2.39 16 14 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 15 C -0.53 -26.44 7.11 25.60 0.18 -26.26 16 16 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 17 C 0.04 2.21 4.01 84.65 0.34 2.55 16 18 N -0.86 -51.04 10.90 21.45 0.23 -50.81 16 19 Si 0.93 43.15 29.54 68.60 2.03 45.18 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 23 C -0.03 -1.69 4.51 -19.87 -0.09 -1.78 16 24 C -0.09 -4.26 8.21 22.27 0.18 -4.08 16 25 C -0.15 -6.53 10.05 22.27 0.22 -6.31 16 26 C -0.14 -5.60 10.05 22.27 0.22 -5.37 16 27 C -0.15 -6.10 10.05 22.27 0.22 -5.88 16 28 C -0.12 -5.55 8.21 22.27 0.18 -5.37 16 29 C 0.49 19.78 7.48 87.90 0.66 20.43 16 30 O -0.56 -29.50 13.99 -3.01 -0.04 -29.54 16 31 H 0.08 1.03 7.21 -2.39 -0.02 1.01 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.08 1.46 7.90 -2.39 -0.02 1.44 16 37 H 0.04 1.63 7.10 -2.39 -0.02 1.61 16 38 H 0.02 0.92 7.04 -2.39 -0.02 0.90 16 39 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.12 1.21 7.12 -2.39 -0.02 1.19 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.12 1.67 8.07 -2.38 -0.02 1.65 16 44 H 0.41 13.64 8.52 -92.70 -0.79 12.85 16 45 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 46 H 0.11 5.63 6.04 -2.91 -0.02 5.62 16 47 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 48 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 49 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 50 H 0.10 4.74 7.01 -2.91 -0.02 4.72 16 Total: -1.00 -81.62 395.89 3.23 -78.39 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: 0.15 Total: 41.43 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.24 Total: -2.43 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -4.10 Total: -100.21 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -0.08 Total: -62.37 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -81.62 3.23 -78.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461160859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.803 kcal (2) G-P(sol) polarization free energy of solvation -81.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds