Wall clock time and date at job start Wed Apr 1 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46914 * 2 1 4 4 C 1.53001 * 109.47280 * 240.00041 * 2 1 3 5 5 H 1.08999 * 109.86842 * 303.94563 * 4 2 1 6 6 C 1.54325 * 109.88177 * 64.95523 * 4 2 1 7 7 C 1.55161 * 102.93878 * 97.22894 * 6 4 2 8 8 H 1.09000 * 111.00355 * 277.42724 * 7 6 4 9 9 N 1.46895 * 111.00550 * 153.61361 * 7 6 4 10 10 C 1.48540 * 111.00098 * 57.59964 * 9 7 6 11 11 C 1.54933 * 103.22531 * 159.71967 * 10 9 7 12 12 C 1.54589 * 102.92594 * 322.58710 * 11 10 9 13 13 C 1.47900 * 111.00181 * 174.99873 * 9 7 6 14 14 C 1.54915 * 101.58391 * 35.50029 * 7 6 4 15 15 N 1.47021 * 109.88493 * 182.76781 * 4 2 1 16 16 S 1.65599 * 125.64723 * 59.47506 * 15 4 2 17 17 O 1.42102 * 104.27762 * 212.22582 * 16 15 4 18 18 O 1.42099 * 104.27865 * 340.07841 * 16 15 4 19 19 C 1.81396 * 104.44965 * 96.15411 * 16 15 4 20 20 C 1.53005 * 109.47115 * 180.02562 * 19 16 15 21 21 C 1.50701 * 109.47003 * 179.97438 * 20 19 16 22 22 H 1.08002 * 119.99882 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00091 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99759 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00278 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47186 * 59.99924 * 25 23 21 27 27 H 1.48496 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47050 * 299.99948 * 25 23 21 29 29 H 1.09003 * 109.46776 * 183.44386 * 1 2 3 30 30 H 1.09002 * 109.46934 * 303.44467 * 1 2 3 31 31 H 1.08997 * 109.46856 * 63.44149 * 1 2 3 32 32 H 1.09000 * 109.47280 * 119.99472 * 2 1 3 33 33 H 1.09001 * 109.47652 * 60.00175 * 3 2 1 34 34 H 1.09003 * 109.46955 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47234 * 299.99758 * 3 2 1 36 36 H 1.09004 * 110.72028 * 215.58566 * 6 4 2 37 37 H 1.08994 * 110.72277 * 338.86860 * 6 4 2 38 38 H 1.08999 * 110.66676 * 278.15874 * 10 9 7 39 39 H 1.08997 * 110.66536 * 41.28800 * 10 9 7 40 40 H 1.09001 * 110.72433 * 204.22478 * 11 10 9 41 41 H 1.09004 * 110.87404 * 81.02428 * 11 10 9 42 42 H 1.08994 * 110.31314 * 263.04399 * 12 11 10 43 43 H 1.09009 * 110.30735 * 140.87043 * 12 11 10 44 44 H 1.08994 * 109.91764 * 333.50619 * 13 9 7 45 45 H 1.08999 * 109.92182 * 94.80613 * 13 9 7 46 46 H 1.08996 * 110.36274 * 81.82893 * 14 7 6 47 47 H 1.09001 * 110.36480 * 204.15359 * 14 7 6 48 48 H 1.09005 * 109.46994 * 299.99828 * 19 16 15 49 49 H 1.08996 * 109.47419 * 59.99470 * 19 16 15 50 50 H 1.08996 * 109.47168 * 299.99573 * 20 19 16 51 51 H 1.08997 * 109.46961 * 59.99971 * 20 19 16 52 52 H 0.96994 * 119.99403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 1.6239 -1.7277 -1.2918 6 6 1.6358 0.0676 -2.5125 7 6 2.9117 0.8912 -2.8309 8 1 2.9519 1.7982 -2.2277 9 7 2.9885 1.2107 -4.2627 10 6 1.7839 1.9577 -4.7068 11 6 2.2542 2.6438 -6.0139 12 6 3.7160 3.0319 -5.6941 13 6 4.1392 2.0951 -4.5474 14 6 4.0310 -0.0983 -2.4211 15 7 3.5087 -0.7846 -1.2255 16 16 4.4247 -1.5063 -0.0497 17 8 5.6098 -0.7238 0.0010 18 8 3.5542 -1.5906 1.0703 19 6 4.7812 -3.1598 -0.7048 20 6 5.6318 -3.9353 0.3032 21 6 5.9274 -5.3093 -0.2408 22 1 5.5464 -5.6004 -1.2086 23 6 6.6844 -6.1946 0.4968 24 7 7.1480 -5.8403 1.6755 25 14 7.0515 -7.8974 -0.1778 26 1 7.7919 -7.7732 -1.4590 27 1 7.8769 -8.6501 0.8006 28 1 5.7769 -8.6228 -0.4110 29 1 -0.3633 -1.0259 0.0617 30 1 -0.3633 0.5664 0.8575 31 1 -0.3633 0.4595 -0.9192 32 1 1.8934 -0.5137 0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.4005 -0.6112 -3.3323 37 1 0.7937 0.7270 -2.3025 38 1 0.9590 1.2738 -4.9065 39 1 1.4970 2.7016 -3.9636 40 1 1.6559 3.5312 -6.2206 41 1 2.2141 1.9494 -6.8532 42 1 3.7697 4.0718 -5.3723 43 1 4.3495 2.8718 -6.5667 44 1 4.3858 2.6804 -3.6617 45 1 4.9991 1.4990 -4.8531 46 1 4.2142 -0.8160 -3.2208 47 1 4.9456 0.4428 -2.1788 48 1 3.8456 -3.6923 -0.8759 49 1 5.3245 -3.0687 -1.6453 50 1 6.5674 -3.4030 0.4747 51 1 5.0880 -4.0265 1.2434 52 1 7.6802 -6.4633 2.1945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475777911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:40 Heat of formation + Delta-G solvation = -75.104011 kcal Electronic energy + Delta-G solvation = -30196.800069 eV Core-core repulsion = 26322.877876 eV Total energy + Delta-G solvation = -3873.922194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.20341 -38.24311 -36.62463 -35.43217 -34.25700 -33.87243 -32.34717 -31.14049 -29.58423 -28.75347 -27.71452 -27.07082 -25.57840 -23.27676 -22.46567 -21.52356 -20.99412 -20.43947 -19.73662 -18.28077 -17.38306 -17.08985 -16.56802 -16.03591 -15.60355 -15.38927 -15.32815 -14.57130 -14.39103 -14.10334 -14.08740 -13.74740 -13.60503 -13.32990 -13.10611 -12.83621 -12.73226 -12.48747 -12.30210 -12.19665 -11.97417 -11.76531 -11.72912 -11.63193 -11.57054 -11.51733 -11.34431 -11.20789 -11.05642 -10.96443 -10.94907 -10.88544 -10.79787 -10.66890 -10.45974 -10.36173 -10.07742 -9.71882 -9.29379 -8.73141 -8.64067 -8.49060 -6.11368 -4.16979 0.74908 3.01357 3.28290 3.32845 3.34928 3.68227 4.13575 4.29996 4.34870 4.39825 4.49007 4.53598 4.65577 4.76020 4.79408 4.98261 5.04555 5.08629 5.14393 5.19670 5.23614 5.29868 5.37591 5.41123 5.47391 5.51030 5.52983 5.58769 5.64758 5.68613 5.69261 5.72826 5.75151 5.77117 5.80154 5.87260 5.91157 5.95660 6.03403 6.16510 6.17208 6.34166 6.50669 6.53867 6.60705 6.63738 6.84972 7.30433 7.36687 7.81614 8.18710 8.86194 9.47661 10.99695 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003040 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.390105 B = 9209.373359 C =10272.109513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C -0.144 4.144 4 C 0.162 3.838 5 H 0.076 0.924 6 C -0.118 4.118 7 C 0.061 3.939 8 H 0.066 0.934 9 N -0.508 5.508 10 C 0.037 3.963 11 C -0.124 4.124 12 C -0.131 4.131 13 C 0.032 3.968 14 C 0.127 3.873 15 N -1.012 6.012 16 S 2.604 3.396 17 O -0.963 6.963 18 O -0.957 6.957 19 C -0.589 4.589 20 C 0.029 3.971 21 C -0.520 4.520 22 H 0.061 0.939 23 C 0.058 3.942 24 N -0.891 5.891 25 Si 0.900 3.100 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.032 0.968 51 H 0.033 0.967 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 18.204 -13.248 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.201 4.201 4 C 0.056 3.944 5 H 0.094 0.906 6 C -0.156 4.156 7 C -0.049 4.049 8 H 0.084 0.916 9 N -0.233 5.233 10 C -0.091 4.091 11 C -0.162 4.162 12 C -0.169 4.169 13 C -0.096 4.096 14 C 0.001 3.999 15 N -0.848 5.848 16 S 2.705 3.295 17 O -0.954 6.954 18 O -0.948 6.948 19 C -0.723 4.723 20 C -0.010 4.010 21 C -0.560 4.560 22 H 0.079 0.921 23 C -0.145 4.145 24 N -0.529 5.529 25 Si 0.728 3.272 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.051 0.949 51 H 0.051 0.949 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.075 18.042 -12.466 25.532 hybrid contribution 0.186 -0.662 -0.347 0.770 sum -12.889 17.380 -12.813 25.147 Atomic orbital electron populations 1.21822 0.94838 1.01920 1.01428 1.21956 0.96037 0.97200 1.00340 1.21903 1.01216 0.95996 1.00995 1.21249 0.79327 0.99086 0.94768 0.90584 1.22795 0.96913 0.98854 0.97076 1.23187 0.96058 0.97757 0.87917 0.91611 1.64733 1.02562 1.40070 1.15909 1.23192 0.93828 0.96157 0.95895 1.22473 0.95714 1.00183 0.97820 1.22402 0.96856 0.98994 0.98688 1.22918 0.94871 0.94215 0.97603 1.21875 0.96362 0.94657 0.86981 1.58829 1.15545 1.71055 1.39327 1.05335 0.73125 0.77554 0.73532 1.93529 1.48161 1.67939 1.85765 1.93471 1.65258 1.87663 1.48406 1.30492 1.10466 1.19155 1.12159 1.18955 0.93963 0.95790 0.92307 1.20971 1.33467 0.97366 1.04189 0.92072 1.25070 0.95531 0.98997 0.94877 1.69950 1.35152 1.36275 1.11537 0.86521 0.78446 0.83520 0.78748 1.20044 1.21063 1.20060 0.92433 0.92569 0.92866 0.86842 0.92923 0.92815 0.92919 0.89761 0.90062 0.89879 0.93807 0.91236 0.90681 0.91650 0.90958 0.93531 0.89927 0.90550 0.90330 0.86225 0.86317 0.94950 0.94864 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.05 37.16 0.34 -1.04 16 2 C -0.14 -1.68 2.60 -90.62 -0.24 -1.91 16 3 C -0.14 -1.67 7.62 37.16 0.28 -1.38 16 4 C 0.16 1.95 2.93 -66.95 -0.20 1.75 16 5 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 6 C -0.12 -1.10 4.40 -24.89 -0.11 -1.21 16 7 C 0.06 0.61 1.86 -65.56 -0.12 0.49 16 8 H 0.07 0.68 5.69 -51.93 -0.30 0.39 16 9 N -0.51 -4.64 5.15 -219.94 -1.13 -5.77 16 10 C 0.04 0.27 5.78 -1.90 -0.01 0.26 16 11 C -0.12 -0.79 7.06 -24.88 -0.18 -0.97 16 12 C -0.13 -0.88 6.93 -25.38 -0.18 -1.06 16 13 C 0.03 0.27 6.35 -2.75 -0.02 0.25 16 14 C 0.13 1.57 6.43 -2.53 -0.02 1.56 16 15 N -1.01 -14.32 2.71 -104.42 -0.28 -14.60 16 16 S 2.60 48.26 5.61 -107.50 -0.60 47.66 16 17 O -0.96 -20.50 17.40 -57.54 -1.00 -21.50 16 18 O -0.96 -19.49 14.85 -57.54 -0.85 -20.35 16 19 C -0.59 -11.69 6.12 37.16 0.23 -11.46 16 20 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 21 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 22 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 25 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.42 6.30 -51.93 -0.33 0.10 16 32 H 0.11 1.76 5.39 -51.93 -0.28 1.48 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.72 7.61 -51.93 -0.40 0.32 16 35 H 0.05 0.51 5.47 -51.93 -0.28 0.22 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.65 5.41 -51.93 -0.28 0.37 16 38 H 0.08 0.58 8.01 -51.93 -0.42 0.16 16 39 H 0.04 0.32 8.02 -51.93 -0.42 -0.10 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.05 0.41 7.62 -51.93 -0.40 0.01 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.02 7.72 -51.93 -0.40 0.62 16 48 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 49 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 50 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -33.34 401.97 -12.24 -45.58 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.37 Total: 0.03 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -0.76 Total: -27.47 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.68 Total: -46.38 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.86 Total: -41.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 48.26 SS G_CDS: -0.60 Total: 47.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.34 -12.24 -45.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475777911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.529 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds