Wall clock time and date at job start Wed Apr 1 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32999 * 119.99757 * 2 1 4 4 C 1.50700 * 119.99757 * 179.97438 * 3 2 1 5 5 C 1.47098 * 120.00161 * 0.02562 * 3 2 1 6 6 O 1.21608 * 119.99893 * 359.97438 * 5 3 2 7 7 N 1.34775 * 120.00006 * 179.97438 * 5 3 2 8 8 C 1.46498 * 120.00012 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.47280 * 180.02562 * 8 7 5 10 10 C 1.53934 * 113.73278 * 271.72889 * 9 8 7 11 11 N 1.47956 * 86.18143 * 221.91692 * 10 9 8 12 12 C 1.46904 * 110.99874 * 137.57928 * 11 10 9 13 13 C 1.50696 * 109.47114 * 90.64265 * 12 11 10 14 14 C 1.38302 * 119.93077 * 269.73201 * 13 12 11 15 15 C 1.38104 * 120.06777 * 179.72758 * 14 13 12 16 16 C 1.38881 * 119.93053 * 0.51556 * 15 14 13 17 17 O 1.35747 * 120.07321 * 179.73170 * 16 15 14 18 18 C 1.34829 * 117.00471 * 174.48724 * 17 16 15 19 19 H 1.07995 * 119.99569 * 5.05626 * 18 17 16 20 20 C 1.38649 * 119.99899 * 185.05505 * 18 17 16 21 21 N 1.31559 * 119.99922 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00410 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46892 * 89.99651 * 22 20 18 24 24 H 1.48495 * 109.47249 * 209.99906 * 22 20 18 25 25 H 1.48498 * 109.46774 * 330.00071 * 22 20 18 26 26 C 1.38889 * 119.86267 * 359.75244 * 16 15 14 27 27 C 1.38104 * 119.92698 * 0.02562 * 26 16 15 28 28 C 1.47970 * 90.76212 * 24.69009 * 11 10 9 29 29 H 1.09001 * 109.47270 * 299.99756 * 1 2 3 30 30 H 1.08998 * 109.47059 * 59.99752 * 1 2 3 31 31 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.99982 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47147 * 270.00258 * 4 3 2 34 34 H 1.09004 * 109.47361 * 29.99946 * 4 3 2 35 35 H 1.08995 * 109.47420 * 150.00506 * 4 3 2 36 36 H 0.97003 * 120.00078 * 0.02562 * 7 5 3 37 37 H 1.09002 * 109.47124 * 60.00166 * 8 7 5 38 38 H 1.09004 * 109.47331 * 300.00133 * 8 7 5 39 39 H 1.09006 * 112.93821 * 43.42877 * 9 8 7 40 40 H 1.08999 * 113.75650 * 336.23663 * 10 9 8 41 41 H 1.09004 * 113.76008 * 107.59864 * 10 9 8 42 42 H 1.09006 * 109.47071 * 210.64252 * 12 11 10 43 43 H 1.08993 * 109.47208 * 330.64316 * 12 11 10 44 44 H 1.07995 * 119.96628 * 359.97208 * 14 13 12 45 45 H 1.07991 * 120.03330 * 180.27018 * 15 14 13 46 46 H 0.96998 * 119.99992 * 179.97438 * 21 20 18 47 47 H 1.07990 * 120.03565 * 179.97438 * 26 16 15 48 48 H 1.08001 * 119.96098 * 179.97438 * 27 26 16 49 49 H 1.08997 * 113.75414 * 220.99327 * 28 11 10 50 50 H 1.09007 * 113.75707 * 89.62681 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2204 2.4257 0.0006 7 7 2.1103 3.5929 0.0011 8 6 1.3778 4.8616 0.0011 9 6 2.3720 6.0246 0.0011 10 6 2.8069 6.4679 1.4096 11 7 2.6731 7.8531 0.9073 12 6 2.0210 8.7137 1.9035 13 6 3.0680 9.3430 2.7859 14 6 3.4674 8.7044 3.9459 15 6 4.4308 9.2759 4.7538 16 6 4.9909 10.4982 4.4059 17 8 5.9341 11.0651 5.2007 18 6 6.5183 12.1930 4.7485 19 1 6.1731 12.6501 3.8330 20 6 7.5621 12.7658 5.4589 21 7 8.1318 13.8666 5.0180 22 14 8.1595 11.9746 7.0421 23 1 9.2348 10.9983 6.7325 24 1 8.6895 13.0233 7.9502 25 1 7.0292 11.2733 7.7022 26 6 4.5837 11.1396 3.2432 27 6 3.6232 10.5607 2.4372 28 6 1.7076 7.4077 -0.1218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.0470 -0.9353 -0.0004 33 1 4.0419 1.1520 1.0284 34 1 4.0425 0.2617 -0.5129 35 1 4.0425 2.0417 -0.5132 36 1 3.0803 3.5930 0.0007 37 1 0.7508 4.9192 0.8909 38 1 0.7514 4.9196 -0.8891 39 1 3.2022 5.8738 -0.6890 40 1 2.0908 6.2129 2.1908 41 1 3.8301 6.1890 1.6614 42 1 1.4569 9.4955 1.3947 43 1 1.3440 8.1153 2.5131 44 1 3.0283 7.7561 4.2182 45 1 4.7453 8.7747 5.6571 46 1 8.8618 14.2676 5.5152 47 1 5.0170 12.0903 2.9702 48 1 3.3059 11.0592 1.5332 49 1 1.8525 7.8798 -1.0934 50 1 0.6699 7.4277 0.2117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481618384.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:43 Heat of formation + Delta-G solvation = 11.094759 kcal Electronic energy + Delta-G solvation = -28466.761292 eV Core-core repulsion = 24461.133006 eV Total energy + Delta-G solvation = -4005.628286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.63781 -39.90669 -39.03402 -36.76532 -35.57420 -35.07233 -32.53147 -31.89376 -30.53342 -30.23790 -28.88417 -26.57279 -26.26042 -25.34370 -24.92391 -23.09001 -22.08661 -21.96515 -20.42389 -20.26886 -19.20890 -17.87345 -17.27520 -16.71087 -16.59938 -16.09886 -15.61423 -15.32331 -15.13459 -14.75648 -14.58069 -14.37456 -14.02910 -13.86664 -13.77076 -13.70348 -13.48009 -13.18445 -12.99770 -12.98698 -12.76762 -12.68079 -12.44736 -12.34756 -12.22446 -11.90483 -11.78700 -11.74495 -11.30900 -11.08728 -10.95410 -10.73206 -10.66842 -10.51119 -10.15063 -9.88824 -9.61593 -9.38232 -9.23020 -8.89264 -8.81999 -8.24604 -7.31058 -6.41602 -4.08184 1.00882 2.14031 2.18989 2.85029 2.93151 3.21427 3.25099 3.39696 3.79877 4.11550 4.23379 4.34111 4.38347 4.42594 4.52455 4.79635 4.85095 4.86261 4.95878 5.00434 5.06925 5.11621 5.13669 5.18464 5.27644 5.29386 5.36353 5.36542 5.46569 5.50506 5.53047 5.61097 5.65132 5.71384 5.71909 5.77052 5.91385 6.03995 6.12137 6.14304 6.16524 6.21882 6.38210 6.57535 6.80557 6.92598 7.06436 7.18243 7.25830 7.33710 7.61837 7.80648 7.90850 8.04086 8.93721 9.56353 10.66070 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.001699 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.400368 B =16474.334411 C =17375.519846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.115 4.115 5 C 0.549 3.451 6 O -0.540 6.540 7 N -0.726 5.726 8 C 0.129 3.871 9 C -0.131 4.131 10 C 0.010 3.990 11 N -0.469 5.469 12 C 0.077 3.923 13 C -0.166 4.166 14 C -0.069 4.069 15 C -0.193 4.193 16 C 0.160 3.840 17 O -0.218 6.218 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.221 4.221 27 C -0.054 4.054 28 C 0.009 3.991 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.279 0.721 47 H 0.132 0.868 48 H 0.108 0.892 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 -24.316 -11.661 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.202 4.202 4 C -0.172 4.172 5 C 0.338 3.662 6 O -0.419 6.419 7 N -0.378 5.378 8 C 0.005 3.995 9 C -0.150 4.150 10 C -0.118 4.118 11 N -0.191 5.191 12 C -0.050 4.050 13 C -0.167 4.167 14 C -0.088 4.088 15 C -0.212 4.212 16 C 0.108 3.892 17 O -0.123 6.123 18 C -0.465 4.465 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.240 4.240 27 C -0.073 4.073 28 C -0.120 4.120 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.126 0.874 49 H 0.109 0.891 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.690 -23.763 -11.572 29.319 hybrid contribution 0.265 -0.369 0.900 1.008 sum -12.425 -24.132 -10.672 29.166 Atomic orbital electron populations 1.21035 0.91710 1.01009 1.04147 1.23656 0.97287 0.96705 0.91144 1.21470 0.96454 0.93137 1.09186 1.20776 0.90800 1.02969 1.02666 1.18426 0.87242 0.84138 0.76377 1.90788 1.13596 1.87634 1.49867 1.45971 1.10571 1.05609 1.75653 1.21413 0.94213 0.81477 1.02428 1.23288 0.99031 0.93665 0.99029 1.24071 1.02603 0.90092 0.95067 1.68653 1.34367 1.07141 1.08944 1.21384 0.94079 0.96597 0.92977 1.19060 1.03288 0.97209 0.97145 1.20432 0.96239 0.98062 0.94027 1.20155 1.02539 0.95789 1.02760 1.19128 0.89100 0.91427 0.89536 1.83567 1.46983 1.39373 1.42423 1.20769 1.15500 0.99330 1.10875 0.87627 1.24464 0.95021 0.95441 0.99074 1.69647 1.23870 1.18631 1.39610 0.86183 0.79652 0.79000 0.82070 1.19902 1.20790 1.18410 1.21275 1.02450 1.03018 0.97275 1.20610 0.94905 0.94253 0.97521 1.23908 0.95848 0.93483 0.98754 0.90100 0.90110 0.92992 0.85815 0.90926 0.91113 0.91699 0.76262 0.91330 0.91157 0.87667 0.91167 0.89298 0.90797 0.93803 0.87511 0.86685 0.91072 0.84994 0.87357 0.89076 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.45 36.01 0.30 -0.62 16 2 C -0.07 -0.45 9.95 -36.13 -0.36 -0.81 16 3 C -0.20 -1.43 6.00 -102.85 -0.62 -2.05 16 4 C -0.12 -0.53 9.61 36.01 0.35 -0.19 16 5 C 0.55 5.19 7.72 -12.67 -0.10 5.09 16 6 O -0.54 -6.72 13.07 5.27 0.07 -6.66 16 7 N -0.73 -5.45 5.50 -61.49 -0.34 -5.79 16 8 C 0.13 1.00 5.53 -4.04 -0.02 0.98 16 9 C -0.13 -0.99 3.94 -89.69 -0.35 -1.34 16 10 C 0.01 0.10 7.51 -2.77 -0.02 0.08 16 11 N -0.47 -5.44 6.14 -239.73 -1.47 -6.92 16 12 C 0.08 0.97 4.92 -4.98 -0.02 0.95 16 13 C -0.17 -2.71 5.44 -104.58 -0.57 -3.28 16 14 C -0.07 -1.15 9.69 -39.61 -0.38 -1.54 16 15 C -0.19 -3.82 9.99 -39.39 -0.39 -4.22 16 16 C 0.16 3.72 6.65 -39.10 -0.26 3.46 16 17 O -0.22 -5.79 8.59 0.06 0.00 -5.79 16 18 C -0.39 -11.01 9.95 30.88 0.31 -10.70 16 19 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.43 13.96 55.48 0.77 -24.65 16 22 Si 0.91 21.70 28.62 -169.99 -4.86 16.84 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 26 C -0.22 -4.79 9.17 -39.39 -0.36 -5.15 16 27 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 28 C 0.01 0.08 7.52 -2.76 -0.02 0.06 16 29 H 0.08 0.74 7.22 -51.93 -0.37 0.37 16 30 H 0.08 0.73 7.22 -51.93 -0.37 0.35 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.25 8.07 -51.93 -0.42 -0.16 16 35 H 0.06 0.25 6.70 -51.93 -0.35 -0.10 16 36 H 0.40 2.23 6.57 -40.82 -0.27 1.96 16 37 H 0.07 0.60 7.84 -51.93 -0.41 0.20 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.66 7.23 -51.93 -0.38 0.28 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 43 H 0.04 0.50 7.32 -51.93 -0.38 0.12 16 44 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 45 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 46 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.13 3.01 5.64 -52.49 -0.30 2.72 16 48 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 LS Contribution 408.95 15.07 6.16 6.16 Total: -1.00 -31.93 408.95 -10.39 -42.33 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.72 Total: 3.45 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -3.01 Total: -18.97 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -1.04 Total: -37.36 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.93 -10.39 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481618384.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.422 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds