Wall clock time and date at job start Wed Apr 1 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47029 * 2 1 4 4 C 1.50706 * 119.99789 * 274.99822 * 3 2 1 5 5 C 1.32990 * 120.00332 * 94.99665 * 3 2 1 6 6 C 1.47104 * 120.00415 * 172.13954 * 5 3 2 7 7 O 1.21613 * 119.99963 * 353.55486 * 6 5 3 8 8 N 1.34774 * 120.00267 * 173.55338 * 6 5 3 9 9 C 1.46499 * 120.00134 * 180.02562 * 8 6 5 10 10 C 1.53933 * 113.73676 * 106.23210 * 9 8 6 11 11 N 1.48193 * 86.10203 * 90.77877 * 10 9 8 12 12 C 1.46898 * 111.07023 * 137.51901 * 11 10 9 13 13 C 1.50702 * 109.46926 * 90.57111 * 12 11 10 14 14 C 1.38300 * 119.92837 * 269.72512 * 13 12 11 15 15 C 1.38100 * 120.06986 * 179.72456 * 14 13 12 16 16 C 1.38881 * 119.92744 * 0.52951 * 15 14 13 17 17 O 1.35749 * 120.06937 * 179.72857 * 16 15 14 18 18 C 1.34830 * 117.00155 * 185.82100 * 17 16 15 19 19 H 1.08003 * 119.99521 * 4.89825 * 18 17 16 20 20 C 1.38654 * 120.00292 * 184.90649 * 18 17 16 21 21 N 1.31564 * 119.99486 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47346 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46928 * 119.99690 * 22 20 18 25 25 H 1.48502 * 109.47456 * 239.99890 * 22 20 18 26 26 C 1.38878 * 119.86004 * 359.74502 * 16 15 14 27 27 C 1.38097 * 119.93517 * 359.97438 * 26 16 15 28 28 C 1.47965 * 90.79733 * 24.59896 * 11 10 9 29 29 H 1.09003 * 109.46982 * 60.00127 * 1 2 3 30 30 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47179 * 300.00348 * 1 2 3 32 32 H 1.08997 * 109.47179 * 239.99652 * 2 1 3 33 33 H 1.09000 * 109.46961 * 119.99347 * 2 1 3 34 34 H 1.09001 * 109.46703 * 264.08988 * 4 3 2 35 35 H 1.08992 * 109.47212 * 24.09297 * 4 3 2 36 36 H 1.08999 * 109.47204 * 144.09439 * 4 3 2 37 37 H 1.08007 * 119.99961 * 352.14140 * 5 3 2 38 38 H 0.97000 * 119.99882 * 359.97438 * 8 6 5 39 39 H 1.09000 * 112.93540 * 334.66138 * 9 8 6 40 40 H 1.08994 * 113.76035 * 205.06229 * 10 9 8 41 41 H 1.08994 * 113.75677 * 336.42699 * 10 9 8 42 42 H 1.09001 * 109.47116 * 210.57079 * 12 11 10 43 43 H 1.08996 * 109.47205 * 330.56899 * 12 11 10 44 44 H 1.08005 * 119.96835 * 359.97438 * 14 13 12 45 45 H 1.07996 * 120.03793 * 180.27322 * 15 14 13 46 46 H 0.97003 * 119.99534 * 180.02562 * 21 20 18 47 47 H 1.08004 * 120.02966 * 179.97438 * 26 16 15 48 48 H 1.07997 * 119.96908 * 179.97438 * 27 26 16 49 49 H 1.08993 * 113.76125 * 221.07924 * 28 11 10 50 50 H 1.09007 * 113.75509 * 89.72003 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3486 2.0144 1.1473 6 6 2.9996 3.3335 1.1381 7 8 3.3547 3.8290 0.0858 8 7 3.2024 3.9930 2.2958 9 6 3.8502 5.3069 2.2866 10 6 2.8837 6.4762 2.5477 11 7 3.2155 6.2979 3.9809 12 6 3.4136 7.5945 4.6424 13 6 2.1017 8.0762 5.2064 14 6 1.2667 8.8639 4.4352 15 6 0.0613 9.3022 4.9471 16 6 -0.3070 8.9602 6.2418 17 8 -1.4887 9.3941 6.7499 18 6 -1.7305 9.1288 8.0495 19 1 -0.9678 8.6641 8.6568 20 6 -2.9584 9.4525 8.6064 21 7 -3.8873 10.0189 7.8667 22 14 -3.2936 9.0844 10.4068 23 1 -2.0957 8.4507 11.0139 24 1 -3.5998 10.3494 11.1219 25 1 -4.4516 8.1611 10.5161 26 6 0.5364 8.1738 7.0157 27 6 1.7378 7.7339 6.4960 28 6 4.5124 5.6806 3.6251 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2060 2.0949 -1.6500 35 1 1.5077 1.7365 -2.0443 36 1 1.9194 3.2172 -1.1466 37 1 2.1274 1.5279 2.0859 38 1 2.9188 3.5980 3.1351 39 1 4.4957 5.4562 1.4211 40 1 3.2215 7.4261 2.1335 41 1 1.8454 6.2502 2.3048 42 1 4.1375 7.4837 5.4497 43 1 3.7855 8.3189 3.9179 44 1 1.5556 9.1332 3.4300 45 1 -0.5924 9.9136 4.3428 46 1 -4.7462 10.2457 8.2564 47 1 0.2529 7.9066 8.0231 48 1 2.3943 7.1226 7.0975 49 1 4.7730 4.8203 4.2415 50 1 5.3276 6.3975 3.5268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494383116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:14 Heat of formation + Delta-G solvation = 7.658173 kcal Electronic energy + Delta-G solvation = -28622.963857 eV Core-core repulsion = 24617.186550 eV Total energy + Delta-G solvation = -4005.777307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.68335 -39.40832 -38.79625 -36.65221 -36.31743 -34.05705 -32.36361 -31.37287 -30.88823 -30.13595 -28.30130 -27.18555 -26.26219 -25.40732 -24.53207 -23.45694 -21.93659 -21.53973 -20.48113 -19.86356 -18.77990 -17.96437 -17.36312 -16.92684 -16.31151 -15.82880 -15.38839 -15.21306 -14.94442 -14.73881 -14.65364 -14.46819 -14.11400 -13.89668 -13.54594 -13.53538 -13.37099 -13.15219 -12.90198 -12.82542 -12.66676 -12.45949 -12.36008 -11.99144 -11.76699 -11.74920 -11.67163 -11.49173 -11.28238 -11.23331 -11.02935 -10.74578 -10.55364 -10.51559 -10.40047 -9.78937 -9.47409 -9.33829 -9.09821 -8.83626 -8.76606 -8.14852 -7.15755 -6.44476 -4.02958 1.11454 2.24488 2.31041 2.97847 3.09513 3.12273 3.13727 3.19379 3.87467 3.97104 4.31071 4.37135 4.48211 4.57212 4.79209 4.83471 4.89028 4.92825 5.04789 5.10736 5.15576 5.18816 5.25522 5.32595 5.33071 5.40905 5.45419 5.49927 5.52599 5.58507 5.59000 5.72268 5.73323 5.80827 5.81945 5.84805 5.89518 6.19233 6.24119 6.26773 6.28177 6.41210 6.47258 6.71820 6.93309 6.95548 7.09978 7.26427 7.40758 7.42501 7.46053 7.85067 8.00897 8.10361 9.01422 9.72343 10.73787 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.001981 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.783403 B =14128.199904 C =15657.169786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.026 4.026 4 C -0.123 4.123 5 C -0.234 4.234 6 C 0.548 3.452 7 O -0.544 6.544 8 N -0.702 5.702 9 C 0.118 3.882 10 C -0.005 4.005 11 N -0.469 5.469 12 C 0.078 3.922 13 C -0.174 4.174 14 C -0.066 4.066 15 C -0.193 4.193 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.234 4.234 27 C -0.053 4.053 28 C -0.009 4.009 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.407 0.593 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.242 -16.669 -12.800 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.028 4.028 4 C -0.179 4.179 5 C -0.255 4.255 6 C 0.338 3.662 7 O -0.424 6.424 8 N -0.352 5.352 9 C 0.011 3.989 10 C -0.135 4.135 11 N -0.192 5.192 12 C -0.049 4.049 13 C -0.175 4.175 14 C -0.085 4.085 15 C -0.213 4.213 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.253 4.253 27 C -0.072 4.072 28 C -0.138 4.138 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.144 0.856 38 H 0.242 0.758 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.123 0.877 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.143 0.857 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.618 -16.422 -13.145 25.615 hybrid contribution 0.143 0.185 1.143 1.166 sum 14.760 -16.237 -12.002 25.011 Atomic orbital electron populations 1.21736 0.94066 1.02156 1.02664 1.20783 0.96826 0.92555 1.03320 1.22564 0.89986 0.94766 0.95467 1.21121 1.02256 1.01189 0.93344 1.22345 1.07544 0.96539 0.99034 1.18581 0.78927 0.85234 0.83415 1.90755 1.51636 1.69477 1.30537 1.45489 1.61250 1.18855 1.09596 1.22264 0.94751 0.83238 0.98608 1.24496 1.01745 0.97641 0.89615 1.68716 1.18439 1.20258 1.11785 1.21355 0.95567 0.89870 0.98104 1.18979 0.97663 1.05408 0.95491 1.20442 0.93356 0.96900 0.97799 1.20162 0.98497 1.07659 0.94957 1.19396 0.86831 0.91332 0.92342 1.83988 1.29770 1.67231 1.27264 1.21364 1.00435 1.42209 0.82620 0.89071 1.25295 0.94490 0.96521 1.00324 1.70055 1.05157 1.38410 1.36190 0.85647 0.78864 0.78408 0.80508 1.19113 1.20167 1.20148 1.21151 0.96732 1.05544 1.01912 1.20537 0.95356 0.96984 0.94323 1.24331 0.93710 1.00350 0.95415 0.92277 0.92071 0.92178 0.90342 0.90651 0.90334 0.92683 0.89348 0.85576 0.75763 0.88024 0.90515 0.89087 0.90969 0.93799 0.87654 0.86686 0.92100 0.85651 0.87705 0.89058 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.50 16 2 C -0.10 -0.58 6.08 -27.88 -0.17 -0.75 16 3 C -0.03 -0.21 5.36 -101.17 -0.54 -0.76 16 4 C -0.12 -1.10 8.46 36.01 0.30 -0.80 16 5 C -0.23 -2.07 9.60 -37.81 -0.36 -2.43 16 6 C 0.55 6.06 7.60 -12.66 -0.10 5.97 16 7 O -0.54 -7.47 12.94 5.27 0.07 -7.40 16 8 N -0.70 -6.86 5.37 -56.13 -0.30 -7.16 16 9 C 0.12 1.17 4.39 -69.62 -0.31 0.87 16 10 C 0.00 -0.06 7.77 -2.63 -0.02 -0.08 16 11 N -0.47 -5.61 6.14 -239.67 -1.47 -7.09 16 12 C 0.08 1.02 4.92 -4.98 -0.02 0.99 16 13 C -0.17 -2.95 5.44 -104.58 -0.57 -3.52 16 14 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 15 C -0.19 -4.15 9.99 -39.39 -0.39 -4.55 16 16 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 17 O -0.18 -5.17 9.76 0.05 0.00 -5.17 16 18 C -0.39 -10.98 9.45 30.89 0.29 -10.69 16 19 H 0.09 2.38 5.29 -52.48 -0.28 2.11 16 20 C 0.04 1.04 5.49 -17.51 -0.10 0.95 16 21 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 22 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.23 -5.15 9.13 -39.40 -0.36 -5.51 16 27 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 28 C -0.01 -0.08 7.69 -2.76 -0.02 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.04 -51.93 -0.42 -0.03 16 34 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 35 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 36 H 0.09 0.99 6.23 -51.93 -0.32 0.67 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.41 3.46 8.72 -40.82 -0.36 3.10 16 39 H 0.10 1.05 7.50 -51.93 -0.39 0.67 16 40 H 0.08 0.81 7.49 -51.93 -0.39 0.42 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 43 H 0.04 0.52 7.33 -51.93 -0.38 0.14 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 45 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 2.77 5.71 -52.48 -0.30 2.47 16 48 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 49 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 LS Contribution 413.80 15.07 6.24 6.24 Total: -1.00 -32.52 413.80 -10.62 -43.14 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.86 Total: 6.87 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.03 Total: -20.31 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -1.01 Total: -38.97 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.52 -10.62 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494383116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.799 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds