Wall clock time and date at job start Wed Apr 1 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99666 * 2 1 4 4 C 1.53002 * 109.47143 * 240.00156 * 3 2 1 5 5 O 1.42901 * 109.47318 * 0.02562 * 3 2 1 6 6 C 1.52995 * 109.47033 * 120.00575 * 3 2 1 7 7 C 1.50704 * 109.47033 * 179.97438 * 6 3 2 8 8 O 1.21272 * 119.99835 * 359.72237 * 7 6 3 9 9 N 1.34781 * 119.99598 * 179.97438 * 7 6 3 10 10 C 1.46501 * 119.99631 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47120 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.76379 * 65.74037 * 11 10 9 13 13 C 1.52783 * 109.77100 * 186.53555 * 11 10 9 14 14 C 1.50600 * 110.85504 * 167.07131 * 13 11 10 15 15 C 1.38980 * 117.61700 * 160.53283 * 14 13 11 16 16 C 1.37909 * 120.58336 * 178.80654 * 15 14 13 17 17 C 1.38266 * 119.82358 * 0.02562 * 16 15 14 18 18 C 1.37953 * 119.72173 * 0.26961 * 17 16 15 19 19 C 1.37672 * 122.86098 * 339.80326 * 14 13 11 20 20 C 1.50805 * 122.34608 * 1.52872 * 19 14 13 21 21 N 1.46683 * 109.67350 * 348.39387 * 20 19 14 22 22 C 1.36937 * 121.33340 * 224.43183 * 21 20 19 23 23 H 1.08000 * 120.00297 * 151.85111 * 22 21 20 24 24 C 1.38817 * 119.99831 * 331.85916 * 22 21 20 25 25 N 1.31615 * 120.00245 * 349.09665 * 24 22 21 26 26 Si 1.86800 * 119.99970 * 169.10650 * 24 22 21 27 27 H 1.48504 * 109.46940 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47240 * 119.99273 * 26 24 22 29 29 H 1.48502 * 109.46901 * 239.99845 * 26 24 22 30 30 H 1.08003 * 119.99796 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00587 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00085 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.47317 * 300.00180 * 4 3 2 34 34 H 1.09003 * 109.46858 * 60.00043 * 4 3 2 35 35 H 1.08994 * 109.47525 * 180.02562 * 4 3 2 36 36 H 0.96696 * 113.99605 * 59.99937 * 5 3 2 37 37 H 1.08998 * 109.47516 * 59.99717 * 6 3 2 38 38 H 1.09004 * 109.47023 * 299.99796 * 6 3 2 39 39 H 0.97001 * 120.00385 * 0.02562 * 9 7 6 40 40 H 1.09004 * 109.47261 * 300.00602 * 10 9 7 41 41 H 1.08998 * 109.46956 * 60.00326 * 10 9 7 42 42 H 1.08999 * 109.20348 * 287.41746 * 13 11 10 43 43 H 1.08994 * 109.20217 * 46.71357 * 13 11 10 44 44 H 1.07995 * 119.70968 * 358.77111 * 15 14 13 45 45 H 1.08004 * 120.08747 * 180.02562 * 16 15 14 46 46 H 1.07999 * 120.13826 * 180.29287 * 17 16 15 47 47 H 1.07998 * 119.75428 * 179.97438 * 18 17 16 48 48 H 1.09004 * 109.43662 * 228.33027 * 20 19 14 49 49 H 1.09002 * 109.44043 * 108.46156 * 20 19 14 50 50 H 0.96996 * 120.00283 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9430 1.3863 -1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3862 1.2491 7 6 3.6970 2.6911 1.2488 8 8 3.5494 3.4764 0.3366 9 7 4.5391 2.9830 2.2599 10 6 5.2725 4.2513 2.2593 11 6 6.1521 4.3323 3.5085 12 1 6.9271 3.5671 3.4639 13 6 6.7945 5.7155 3.5993 14 6 7.4044 5.9353 4.9586 15 6 8.3637 6.9334 5.0807 16 6 8.9441 7.2032 6.3023 17 6 8.5705 6.4753 7.4169 18 6 7.6229 5.4798 7.2975 19 6 7.0405 5.2050 6.0675 20 6 6.0199 4.0965 6.0043 21 7 5.3271 4.1362 4.7120 22 6 3.9675 3.9966 4.6284 23 1 3.4265 4.4559 3.8142 24 6 3.2844 3.2651 5.5902 25 7 3.9513 2.5306 6.4551 26 14 1.4184 3.3227 5.6569 27 1 0.9122 4.2155 4.5836 28 1 0.8736 1.9552 5.4618 29 1 0.9863 3.8439 6.9786 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.6514 0.5578 -1.2494 34 1 2.3163 1.3285 -2.1392 35 1 3.4883 2.3300 -1.2491 36 1 0.5438 2.4030 0.7659 37 1 3.6514 0.5577 1.2491 38 1 2.3165 1.3284 2.1392 39 1 4.6602 2.3531 2.9875 40 1 5.8995 4.3080 1.3694 41 1 4.5647 5.0802 2.2585 42 1 7.5718 5.8004 2.8399 43 1 6.0348 6.4762 3.4200 44 1 8.6576 7.5025 4.2112 45 1 9.6885 7.9810 6.3881 46 1 9.0183 6.6855 8.3769 47 1 7.3310 4.9106 8.1677 48 1 5.2952 4.2244 6.8085 49 1 6.5209 3.1352 6.1180 50 1 3.4740 2.0191 7.1270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502522150.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:44 Heat of formation + Delta-G solvation = -30.863779 kcal Electronic energy + Delta-G solvation = -31112.935545 eV Core-core repulsion = 27105.487801 eV Total energy + Delta-G solvation = -4007.447744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.13438 -40.59676 -38.97798 -37.90356 -35.25257 -34.47000 -33.93968 -32.96519 -32.26599 -31.66222 -30.52712 -28.98916 -27.35721 -26.47854 -24.53817 -23.69674 -22.89344 -22.41255 -21.14481 -20.55703 -20.55068 -18.58106 -17.91238 -17.69356 -17.38319 -16.89010 -16.62980 -16.37658 -16.10584 -16.01430 -15.64404 -15.52369 -15.30115 -15.11182 -14.61453 -14.38757 -14.02743 -13.94867 -13.76562 -13.58489 -13.25512 -13.18628 -13.14298 -13.05428 -12.77582 -12.64640 -12.56647 -12.45050 -12.39695 -12.25547 -12.14516 -11.97159 -11.85699 -11.59968 -11.27724 -11.14946 -10.65892 -10.45051 -10.29123 -9.70416 -9.53511 -9.26105 -8.65551 -7.85537 -5.29829 0.58916 0.62923 1.31750 1.39788 1.47616 1.53949 1.88260 2.44705 2.53806 2.98584 3.32463 3.36940 3.52731 3.77215 3.83957 3.87251 4.08210 4.11106 4.23675 4.25026 4.29301 4.39357 4.40643 4.44111 4.53348 4.62065 4.70610 4.73021 4.76308 4.84209 4.88456 4.92719 4.93251 4.99032 5.15753 5.21060 5.23812 5.27604 5.38701 5.45307 5.52254 5.64160 5.68773 5.70875 5.75270 5.79781 5.83783 6.02175 6.28115 6.37034 6.80702 6.85603 7.15888 7.52348 7.81594 8.37956 9.21718 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.003353 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.766564 B = 8348.591715 C = 9748.974384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.190 4.190 3 C 0.174 3.826 4 C -0.142 4.142 5 O -0.561 6.561 6 C -0.161 4.161 7 C 0.507 3.493 8 O -0.570 6.570 9 N -0.699 5.699 10 C 0.144 3.856 11 C 0.160 3.840 12 H 0.042 0.958 13 C -0.085 4.085 14 C -0.084 4.084 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.109 4.109 20 C 0.224 3.776 21 N -0.599 5.599 22 C -0.226 4.226 23 H 0.062 0.938 24 C -0.034 4.034 25 N -0.928 5.928 26 Si 0.941 3.059 27 H -0.280 1.280 28 H -0.283 1.283 29 H -0.300 1.300 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.376 0.624 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.140 0.860 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.015 0.985 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -1.364 -6.319 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.208 4.208 3 C 0.133 3.867 4 C -0.199 4.199 5 O -0.368 6.368 6 C -0.201 4.201 7 C 0.294 3.706 8 O -0.451 6.451 9 N -0.350 5.350 10 C 0.020 3.980 11 C 0.054 3.946 12 H 0.060 0.940 13 C -0.124 4.124 14 C -0.084 4.084 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.110 4.110 20 C 0.099 3.901 21 N -0.323 5.323 22 C -0.356 4.356 23 H 0.080 0.920 24 C -0.230 4.230 25 N -0.574 5.574 26 Si 0.771 3.229 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.228 1.228 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.224 0.776 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.246 0.754 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.157 0.843 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.133 0.867 48 H 0.078 0.922 49 H 0.033 0.967 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.819 -0.772 -7.414 8.876 hybrid contribution -1.527 -0.527 1.623 2.290 sum 3.292 -1.300 -5.790 6.786 Atomic orbital electron populations 1.24022 0.96026 1.02984 0.98805 1.23624 0.96980 0.98357 1.01870 1.19946 0.87919 0.84580 0.94254 1.21889 0.99012 1.03731 0.95294 1.86651 1.50696 1.50261 1.49193 1.22381 1.00717 0.96346 1.00674 1.20766 0.79393 0.88975 0.81446 1.90601 1.65876 1.51683 1.36940 1.46008 1.43717 1.20825 1.24415 1.21120 0.93927 0.86291 0.96657 1.20827 0.92267 0.95223 0.86308 0.93978 1.20824 0.99724 0.97922 0.93901 1.19667 0.97158 0.96584 0.95036 1.21436 0.96733 0.97415 0.98977 1.21328 1.00742 1.00459 0.92366 1.21306 0.97468 0.95850 0.99877 1.21233 0.98245 0.99375 0.96750 1.20800 0.98034 0.98365 0.93836 1.19328 0.90787 0.91188 0.88845 1.44176 1.02758 1.84938 1.00435 1.19121 0.82563 1.24159 1.09803 0.92042 1.25465 1.00037 0.97521 0.99934 1.70084 1.34609 1.31702 1.21011 0.85600 0.83158 0.77320 0.76805 1.20482 1.20937 1.22768 0.86375 0.88325 0.84736 0.89816 0.92500 0.91401 0.77619 0.86044 0.88873 0.75351 0.90848 0.93931 0.88738 0.91574 0.84259 0.83400 0.83960 0.86715 0.92224 0.96728 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 13.93 67.78 0.94 -2.65 16 2 C -0.19 -4.04 8.77 25.65 0.22 -3.81 16 3 C 0.17 4.69 0.94 -11.54 -0.01 4.68 16 4 C -0.14 -3.82 8.50 71.98 0.61 -3.21 16 5 O -0.56 -17.64 10.85 -131.60 -1.43 -19.07 16 6 C -0.16 -4.55 4.93 29.85 0.15 -4.40 16 7 C 0.51 18.05 7.39 87.66 0.65 18.69 16 8 O -0.57 -23.45 12.95 14.37 0.19 -23.26 16 9 N -0.70 -25.53 4.01 -463.06 -1.86 -27.39 16 10 C 0.14 5.22 4.45 86.38 0.38 5.60 16 11 C 0.16 5.92 3.02 44.78 0.14 6.06 16 12 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 13 C -0.08 -2.75 5.21 29.74 0.15 -2.59 16 14 C -0.08 -2.89 5.76 -19.85 -0.11 -3.01 16 15 C -0.13 -3.55 9.59 22.37 0.21 -3.33 16 16 C -0.13 -3.29 10.04 22.20 0.22 -3.06 16 17 C -0.13 -3.47 10.05 22.21 0.22 -3.25 16 18 C -0.14 -4.69 9.62 22.35 0.22 -4.48 16 19 C -0.11 -4.24 5.82 -19.82 -0.12 -4.36 16 20 C 0.22 10.28 4.80 85.63 0.41 10.69 16 21 N -0.60 -26.94 2.85 -680.35 -1.94 -28.88 16 22 C -0.23 -11.07 6.96 84.03 0.58 -10.49 16 23 H 0.06 3.14 6.19 -2.91 -0.02 3.12 16 24 C -0.03 -1.70 5.08 84.86 0.43 -1.27 16 25 N -0.93 -49.43 11.07 21.65 0.24 -49.19 16 26 Si 0.94 42.49 29.57 68.60 2.03 44.52 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 30 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.10 2.05 6.41 -2.91 -0.02 2.03 16 32 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.25 5.50 -2.39 -0.01 2.24 16 36 H 0.38 9.98 8.05 -74.06 -0.60 9.39 16 37 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.41 15.80 7.34 -92.71 -0.68 15.12 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.04 1.73 7.31 -2.39 -0.02 1.71 16 42 H 0.09 2.45 8.11 -2.39 -0.02 2.43 16 43 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16 44 H 0.14 3.06 8.05 -2.91 -0.02 3.03 16 45 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 46 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 47 H 0.11 3.82 8.05 -2.91 -0.02 3.80 16 48 H 0.06 3.12 6.46 -2.38 -0.02 3.11 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -63.14 394.53 2.22 -60.93 By element: Atomic # 1 Polarization: 46.87 SS G_CDS: -0.32 Total: 46.55 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.31 Total: -4.21 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -3.56 Total: -105.46 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.24 Total: -42.33 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.14 2.22 -60.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502522150.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.062 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds