Wall clock time and date at job start Wed Apr 1 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.46922 * 120.62635 * 359.71868 * 8 6 5 10 10 C 1.52761 * 109.00948 * 233.57972 * 9 8 6 11 11 C 1.53040 * 109.38301 * 305.59117 * 10 9 8 12 12 H 1.08993 * 109.45986 * 301.21397 * 11 10 9 13 13 N 1.46505 * 109.45793 * 181.25669 * 11 10 9 14 14 C 1.34771 * 120.00117 * 84.93243 * 13 11 10 15 15 O 1.21289 * 119.99892 * 0.02562 * 14 13 11 16 16 C 1.50694 * 120.00271 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.47324 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47324 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00144 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00465 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00271 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99470 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47355 * 90.00195 * 22 20 18 24 24 H 1.48509 * 109.46885 * 210.00109 * 22 20 18 25 25 H 1.48507 * 109.47254 * 329.99729 * 22 20 18 26 26 C 1.53036 * 109.53752 * 61.23946 * 11 10 9 27 27 H 1.09002 * 109.52530 * 178.66296 * 26 11 10 28 28 F 1.39901 * 109.49928 * 58.58353 * 26 11 10 29 29 C 1.46925 * 120.63204 * 179.97438 * 8 6 5 30 30 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 32 32 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 36 36 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 37 37 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 38 38 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 39 39 H 1.08998 * 109.59231 * 353.41794 * 9 8 6 40 40 H 1.09009 * 109.58489 * 113.84164 * 9 8 6 41 41 H 1.09001 * 109.56363 * 185.55143 * 10 9 8 42 42 H 1.09001 * 109.38176 * 65.51733 * 10 9 8 43 43 H 0.97005 * 119.99712 * 264.93644 * 13 11 10 44 44 H 1.09001 * 109.46675 * 299.99778 * 16 14 13 45 45 H 1.08994 * 109.47448 * 59.99788 * 16 14 13 46 46 H 1.08998 * 109.46734 * 299.99834 * 17 16 14 47 47 H 1.08994 * 109.47411 * 59.99300 * 17 16 14 48 48 H 0.97003 * 119.99867 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.58633 * 246.15813 * 29 8 6 50 50 H 1.08997 * 109.58490 * 6.43999 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9215 -2.0317 3.4308 10 6 4.1690 -2.8888 3.6377 11 6 3.7505 -4.3218 3.9745 12 1 3.1358 -4.3186 4.8746 13 7 4.9454 -5.1383 4.2028 14 6 5.5259 -5.1579 5.4189 15 8 5.0589 -4.5000 6.3245 16 6 6.7553 -5.9973 5.6536 17 6 7.2090 -5.8422 7.1065 18 6 8.4388 -6.6810 7.3410 19 1 8.8549 -7.2666 6.5346 20 6 9.0328 -6.7011 8.5852 21 7 10.1056 -7.4335 8.7899 22 14 8.3135 -5.6877 9.9799 23 1 7.3141 -6.5008 10.7182 24 1 9.4000 -5.2784 10.9058 25 1 7.6547 -4.4783 9.4244 26 6 2.9476 -4.9075 2.8107 27 1 2.6700 -5.9361 3.0408 28 9 3.7250 -4.8827 1.6479 29 6 1.6812 -4.0715 2.5976 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7490 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 3.2147 -1.0380 3.0924 40 1 2.3753 -1.9535 4.3709 41 1 4.7606 -2.4804 4.4571 42 1 4.7636 -2.8886 2.7242 43 1 5.3187 -5.6647 3.4785 44 1 6.5239 -7.0438 5.4553 45 1 7.5523 -5.6687 4.9867 46 1 7.4402 -4.7957 7.3052 47 1 6.4119 -6.1710 7.7732 48 1 10.5237 -7.4473 9.6651 49 1 1.0320 -4.1627 3.4684 50 1 1.1541 -4.4224 1.7104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608126728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:08 Heat of formation + Delta-G solvation = -177.441150 kcal Electronic energy + Delta-G solvation = -31267.174972 eV Core-core repulsion = 26822.601931 eV Total energy + Delta-G solvation = -4444.573041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.01626 -41.18843 -39.67149 -38.43485 -36.80043 -34.90716 -34.19726 -33.51308 -31.70998 -31.31393 -30.79018 -27.77910 -27.72898 -26.67652 -25.12327 -23.91590 -22.65145 -21.29026 -20.75435 -19.87459 -19.48005 -18.48995 -17.35448 -17.07186 -16.71177 -16.47279 -16.31054 -16.14419 -15.68116 -15.22425 -15.12368 -14.95390 -14.69584 -14.39517 -14.09739 -13.83109 -13.74208 -13.43547 -13.05620 -12.92114 -12.68178 -12.62669 -12.58320 -12.48395 -12.29919 -12.26351 -12.21606 -12.00187 -11.74070 -11.64249 -11.45252 -11.20959 -10.98194 -10.92549 -10.71366 -10.31706 -10.20193 -10.08244 -9.81634 -9.41129 -9.21377 -9.11325 -9.04403 -8.52845 -6.04775 -4.03768 1.72324 2.49309 2.99781 3.19267 3.35823 3.39378 3.42661 3.52631 3.99056 4.08912 4.31178 4.34545 4.38949 4.43921 4.48714 4.53153 4.73168 4.82108 4.96501 4.99395 5.09939 5.14254 5.17361 5.24351 5.30485 5.31998 5.32906 5.39982 5.42062 5.49167 5.50448 5.61978 5.67583 5.89950 5.93385 5.94626 6.03784 6.05658 6.07655 6.11270 6.46181 6.65162 6.94888 7.32540 7.39990 7.64157 7.76610 7.98342 8.46054 8.55908 8.98253 9.57945 11.08007 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.002041 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.354489 B =13712.338549 C =14107.011826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.360 6.360 6 C 0.659 3.341 7 O -0.568 6.568 8 N -0.595 5.595 9 C 0.114 3.886 10 C -0.148 4.148 11 C 0.121 3.879 12 H 0.106 0.894 13 N -0.738 5.738 14 C 0.514 3.486 15 O -0.538 6.538 16 C -0.123 4.123 17 C 0.002 3.998 18 C -0.526 4.526 19 H 0.073 0.927 20 C 0.068 3.932 21 N -0.903 5.903 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 C 0.071 3.929 27 H 0.106 0.894 28 F -0.201 7.201 29 C 0.106 3.894 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.403 0.597 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.263 0.737 49 H 0.094 0.906 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 14.329 -19.765 32.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.414 3.586 7 O -0.457 6.457 8 N -0.335 5.335 9 C -0.009 4.009 10 C -0.188 4.188 11 C 0.015 3.985 12 H 0.124 0.876 13 N -0.391 5.391 14 C 0.303 3.697 15 O -0.414 6.414 16 C -0.162 4.162 17 C -0.036 4.036 18 C -0.564 4.564 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.542 5.542 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.186 1.186 26 C 0.033 3.967 27 H 0.124 0.876 28 F -0.182 7.182 29 C -0.017 4.017 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.237 0.763 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.042 0.958 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.113 0.887 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.398 14.673 -19.286 32.329 hybrid contribution 0.032 0.165 0.327 0.368 sum -21.366 14.838 -18.959 32.189 Atomic orbital electron populations 1.22513 0.93974 1.05014 1.02496 1.22103 0.94358 0.91574 0.82108 1.21865 1.02399 0.92414 1.03144 1.22512 1.01713 1.03445 0.96381 1.86303 1.71381 1.23416 1.46394 1.17865 0.78581 0.80670 0.81440 1.90887 1.41552 1.70423 1.42886 1.46848 1.53014 1.11605 1.22048 1.21701 0.90607 0.97207 0.91355 1.22259 0.98011 0.94710 1.03788 1.21394 0.88365 0.90896 0.97837 0.87639 1.46187 1.29749 1.49453 1.13723 1.21590 0.85574 0.81659 0.80884 1.90653 1.64414 1.43506 1.42803 1.21683 0.92955 0.98891 1.02714 1.19363 0.96573 0.97824 0.89794 1.21110 1.09946 1.27526 0.97796 0.90933 1.24982 0.94602 0.95044 0.98673 1.69910 1.20558 1.40349 1.23333 0.86787 0.78807 0.81754 0.82122 1.20261 1.21453 1.18552 1.22341 0.90477 1.01594 0.82250 0.87609 1.92848 1.76686 1.97917 1.50722 1.22224 0.95586 0.78646 1.05258 0.92182 0.91114 0.89427 0.91363 0.90097 0.91436 0.89399 0.91132 0.92075 0.88370 0.90451 0.88934 0.90521 0.76287 0.89523 0.89480 0.95837 0.96278 0.92705 0.88745 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.37 37.16 0.31 -1.11 16 2 C 0.14 1.12 1.13 -90.62 -0.10 1.02 16 3 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 4 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 5 O -0.36 -3.68 8.53 -40.31 -0.34 -4.02 16 6 C 0.66 7.36 7.74 54.05 0.42 7.78 16 7 O -0.57 -7.26 11.29 -19.28 -0.22 -7.48 16 8 N -0.59 -5.67 2.96 -178.80 -0.53 -6.20 16 9 C 0.11 0.99 6.42 -3.93 -0.03 0.96 16 10 C -0.15 -1.51 5.52 -26.83 -0.15 -1.66 16 11 C 0.12 1.26 2.24 -67.89 -0.15 1.10 16 12 H 0.11 1.16 7.58 -51.93 -0.39 0.76 16 13 N -0.74 -9.04 5.06 -53.77 -0.27 -9.31 16 14 C 0.51 8.64 7.79 -10.99 -0.09 8.56 16 15 O -0.54 -10.91 15.64 5.55 0.09 -10.82 16 16 C -0.12 -2.28 5.64 -27.88 -0.16 -2.44 16 17 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 18 C -0.53 -14.86 9.66 -34.44 -0.33 -15.19 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 22 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 26 C 0.07 0.60 3.71 -26.59 -0.10 0.50 16 27 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 28 F -0.20 -2.20 16.18 2.25 0.04 -2.16 16 29 C 0.11 0.84 6.18 -3.69 -0.02 0.82 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.87 5.88 -51.93 -0.31 0.57 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.83 6.93 -51.93 -0.36 0.47 16 40 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.84 7.74 -51.93 -0.40 0.44 16 43 H 0.40 4.21 8.36 -40.82 -0.34 3.87 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.02 0.59 7.15 -51.93 -0.37 0.22 16 47 H 0.02 0.48 7.53 -51.93 -0.39 0.08 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.11 0.97 7.00 -51.93 -0.36 0.60 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -35.00 398.45 -7.39 -42.39 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.31 Total: 0.50 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 0.05 Total: 0.50 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.03 Total: -42.52 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.47 Total: -22.33 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.00 -7.39 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608126728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.054 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds