Wall clock time and date at job start Wed Apr 1 2020 05:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47072 * 2 1 4 4 C 1.53005 * 109.46984 * 240.00366 * 2 1 3 5 5 O 1.45202 * 109.46991 * 120.00081 * 2 1 3 6 6 C 1.34638 * 116.99655 * 60.00290 * 5 2 1 7 7 O 1.21502 * 120.00380 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99576 * 179.97438 * 6 5 2 9 9 C 1.46932 * 120.63120 * 0.02562 * 8 6 5 10 10 C 1.53184 * 108.77491 * 126.37073 * 9 8 6 11 11 C 1.53038 * 109.31455 * 54.63609 * 10 9 8 12 12 H 1.08989 * 109.45035 * 58.64672 * 11 10 9 13 13 N 1.46499 * 109.46057 * 178.61418 * 11 10 9 14 14 C 1.34777 * 120.00065 * 275.06943 * 13 11 10 15 15 O 1.21283 * 120.00122 * 359.97438 * 14 13 11 16 16 C 1.50701 * 120.00078 * 180.02562 * 14 13 11 17 17 C 1.53004 * 109.47211 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47211 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 C 1.53045 * 109.53726 * 298.63025 * 11 10 9 27 27 H 1.08995 * 109.49700 * 181.31745 * 26 11 10 28 28 F 1.39900 * 109.49912 * 301.41748 * 26 11 10 29 29 C 1.46925 * 120.63238 * 179.97438 * 8 6 5 30 30 H 1.09003 * 109.47016 * 299.99614 * 1 2 3 31 31 H 1.08997 * 109.47108 * 59.99488 * 1 2 3 32 32 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46938 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47572 * 300.00228 * 3 2 1 35 35 H 1.09003 * 109.46886 * 60.00306 * 3 2 1 36 36 H 1.09003 * 109.46453 * 299.99665 * 4 2 1 37 37 H 1.08996 * 109.47214 * 59.99359 * 4 2 1 38 38 H 1.08994 * 109.47090 * 180.02562 * 4 2 1 39 39 H 1.08999 * 109.58099 * 246.15765 * 9 8 6 40 40 H 1.09002 * 109.58729 * 6.58172 * 9 8 6 41 41 H 1.09001 * 109.50162 * 294.67826 * 10 9 8 42 42 H 1.09001 * 109.49675 * 174.59006 * 10 9 8 43 43 H 0.97000 * 120.00380 * 95.06139 * 13 11 10 44 44 H 1.09000 * 109.47827 * 59.99362 * 16 14 13 45 45 H 1.09007 * 109.47098 * 299.99085 * 16 14 13 46 46 H 1.09000 * 109.47211 * 59.99027 * 17 16 14 47 47 H 1.09007 * 109.46376 * 299.99569 * 17 16 14 48 48 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 49 49 H 1.08995 * 109.58782 * 113.84198 * 29 8 6 50 50 H 1.09003 * 109.58462 * 353.41392 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4166 9 6 2.9159 -2.0299 3.4342 10 6 2.2614 -2.2145 4.8068 11 6 2.0004 -3.7033 5.0470 12 1 2.9417 -4.2500 4.9931 13 7 1.4047 -3.8867 6.3728 14 6 2.1958 -3.9807 7.4599 15 8 3.4009 -3.9140 7.3406 16 6 1.5830 -4.1700 8.8236 17 6 2.6919 -4.2464 9.8750 18 6 2.0791 -4.4350 11.2388 19 1 1.0060 -4.4940 11.3450 20 6 2.8882 -4.5259 12.3514 21 7 4.1949 -4.4537 12.2220 22 14 2.1282 -4.7519 14.0428 23 1 1.3411 -6.0109 14.0677 24 1 3.2044 -4.8213 15.0638 25 1 1.2351 -3.6037 14.3417 26 6 1.0409 -4.2335 3.9791 27 1 0.8371 -5.2881 4.1645 28 9 -0.1560 -3.5106 4.0264 29 6 1.6811 -4.0716 2.5974 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7216 -1.2491 39 1 3.9007 -2.4972 3.4331 40 1 3.0135 -0.9664 3.2160 41 1 1.3174 -1.6703 4.8359 42 1 2.9262 -1.8321 5.5813 43 1 0.4409 -3.9403 6.4682 44 1 1.0054 -5.0943 8.8374 45 1 0.9272 -3.3284 9.0473 46 1 3.2699 -3.3223 9.8612 47 1 3.3473 -5.0882 9.6511 48 1 4.7641 -4.5173 13.0049 49 1 2.5650 -4.7056 2.5280 50 1 0.9639 -4.3552 1.8271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608126729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:18 Heat of formation + Delta-G solvation = -180.234601 kcal Electronic energy + Delta-G solvation = -31187.447246 eV Core-core repulsion = 26742.753072 eV Total energy + Delta-G solvation = -4444.694174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -47.96700 -41.14701 -39.55158 -38.35776 -36.73972 -34.82817 -34.14493 -33.47404 -31.58018 -31.22798 -30.50730 -27.75041 -27.70153 -26.35244 -24.99223 -23.86234 -22.65355 -21.53413 -20.70722 -19.82743 -19.42879 -18.43410 -17.11244 -16.98097 -16.65831 -16.41008 -16.23870 -15.86836 -15.62988 -15.10608 -15.01432 -14.89484 -14.63368 -14.44674 -14.31536 -13.78243 -13.67270 -13.31963 -12.94854 -12.86991 -12.64227 -12.55053 -12.40103 -12.29970 -12.23320 -12.18253 -12.07568 -11.92387 -11.70098 -11.60752 -11.19305 -11.14060 -10.92052 -10.85986 -10.68124 -10.62675 -10.27905 -9.98176 -9.70534 -9.31284 -9.15360 -8.99550 -8.93797 -8.33530 -5.97777 -4.02274 1.76716 2.53484 3.14195 3.28417 3.33550 3.38439 3.40337 3.44398 4.05364 4.15416 4.36326 4.38889 4.41952 4.45892 4.49784 4.56038 4.80006 4.87743 5.01390 5.07116 5.12670 5.19941 5.20265 5.28594 5.34805 5.37159 5.39550 5.44035 5.49072 5.51959 5.60355 5.65182 5.75610 5.93623 5.96797 6.01639 6.12061 6.15035 6.19232 6.21223 6.57635 6.85505 6.99516 7.71674 7.77354 7.83189 8.02450 8.04640 8.36280 8.68207 9.05844 9.61381 11.13056 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026142 B = 0.001917 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.803454 B =14600.493005 C =14896.882321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.360 6.360 6 C 0.659 3.341 7 O -0.569 6.569 8 N -0.594 5.594 9 C 0.114 3.886 10 C -0.148 4.148 11 C 0.121 3.879 12 H 0.105 0.895 13 N -0.740 5.740 14 C 0.513 3.487 15 O -0.532 6.532 16 C -0.130 4.130 17 C 0.038 3.962 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.071 3.929 27 H 0.106 0.894 28 F -0.202 7.202 29 C 0.106 3.894 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.401 0.599 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.261 0.739 49 H 0.095 0.905 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 7.156 -27.906 29.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.414 3.586 7 O -0.458 6.458 8 N -0.335 5.335 9 C -0.009 4.009 10 C -0.187 4.187 11 C 0.015 3.985 12 H 0.123 0.877 13 N -0.394 5.394 14 C 0.302 3.698 15 O -0.407 6.407 16 C -0.170 4.170 17 C 0.000 4.000 18 C -0.567 4.567 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.033 3.967 27 H 0.123 0.877 28 F -0.182 7.182 29 C -0.017 4.017 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.235 0.765 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.113 0.887 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.467 7.128 -28.177 29.574 hybrid contribution -0.947 -0.067 1.036 1.405 sum -6.415 7.061 -27.141 28.769 Atomic orbital electron populations 1.22512 0.93913 1.05090 1.02525 1.22098 0.94452 0.91564 0.82045 1.21863 1.02286 0.92457 1.03206 1.22511 1.01546 1.03456 0.96475 1.86305 1.71403 1.23383 1.46379 1.17864 0.78321 0.80580 0.81797 1.90881 1.41214 1.70473 1.43259 1.46857 1.53170 1.11677 1.21781 1.21802 0.93234 0.99549 0.86311 1.22330 1.02771 0.96591 0.97026 1.21376 0.97453 0.96872 0.82765 0.87666 1.46230 1.10522 1.76866 1.05759 1.21614 0.87326 0.74213 0.86616 1.90668 1.14893 1.48614 1.86515 1.21886 1.02155 1.02387 0.90612 1.18893 0.91996 0.98526 0.90539 1.21184 0.92990 1.50626 0.91866 0.92648 1.25021 0.94820 0.95329 0.99202 1.69980 1.03031 1.49875 1.29947 0.86647 0.78751 0.78658 0.83831 1.20253 1.21286 1.20249 1.22331 0.81759 0.96650 0.95928 0.87658 1.92842 1.47720 1.80323 1.97360 1.22208 1.01865 0.80731 0.96900 0.92087 0.91168 0.89396 0.91422 0.90129 0.91365 0.89435 0.91140 0.92169 0.90376 0.88390 0.90594 0.88919 0.76497 0.90152 0.90148 0.95832 0.95827 0.92882 0.88729 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 2 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.54 16 4 C -0.18 -1.47 8.37 37.16 0.31 -1.16 16 5 O -0.36 -3.80 8.53 -40.32 -0.34 -4.14 16 6 C 0.66 7.60 7.74 54.06 0.42 8.01 16 7 O -0.57 -7.45 11.29 -19.27 -0.22 -7.67 16 8 N -0.59 -5.93 2.95 -178.59 -0.53 -6.45 16 9 C 0.11 1.05 6.45 -3.71 -0.02 1.02 16 10 C -0.15 -1.61 5.53 -26.62 -0.15 -1.75 16 11 C 0.12 1.35 2.23 -67.89 -0.15 1.19 16 12 H 0.11 1.24 7.58 -51.94 -0.39 0.85 16 13 N -0.74 -9.67 5.06 -53.77 -0.27 -9.94 16 14 C 0.51 9.23 7.79 -10.98 -0.09 9.14 16 15 O -0.53 -11.61 15.65 5.55 0.09 -11.52 16 16 C -0.13 -2.56 5.64 -27.88 -0.16 -2.71 16 17 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 18 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 22 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.07 0.64 3.71 -26.63 -0.10 0.54 16 27 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 28 F -0.20 -2.29 16.17 2.25 0.04 -2.25 16 29 C 0.11 0.89 6.17 -3.74 -0.02 0.87 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.89 5.88 -51.93 -0.31 0.59 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.87 6.93 -51.93 -0.36 0.51 16 41 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.40 4.46 8.36 -40.82 -0.34 4.12 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.11 1.01 7.00 -51.93 -0.36 0.64 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -34.85 402.08 -7.76 -42.61 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.35 Total: 1.48 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 0.05 Total: 1.73 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.06 Total: -42.81 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.47 Total: -23.32 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.85 -7.76 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608126729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.625 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds