Wall clock time and date at job start Wed Apr 1 2020 05:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46924 * 120.62809 * 179.72615 * 8 6 5 10 10 C 1.53191 * 108.77693 * 126.37170 * 9 8 6 11 11 C 1.53035 * 109.31064 * 54.63312 * 10 9 8 12 12 H 1.09004 * 109.46320 * 58.64820 * 11 10 9 13 13 N 1.46501 * 109.45906 * 178.61422 * 11 10 9 14 14 C 1.34778 * 120.00356 * 204.99908 * 13 11 10 15 15 O 1.21281 * 119.99671 * 0.02562 * 14 13 11 16 16 C 1.50696 * 120.00311 * 180.02562 * 14 13 11 17 17 C 1.53005 * 109.47155 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46951 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99979 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99880 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99920 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47104 * 90.00099 * 22 20 18 24 24 H 1.48497 * 109.47079 * 210.00245 * 22 20 18 25 25 H 1.48494 * 109.47197 * 330.00168 * 22 20 18 26 26 C 1.53036 * 109.53955 * 298.63578 * 11 10 9 27 27 H 1.08996 * 109.49830 * 301.41030 * 26 11 10 28 28 F 1.39902 * 109.49678 * 181.34970 * 26 11 10 29 29 C 1.46921 * 120.63395 * 359.45055 * 8 6 5 30 30 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 31 31 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 32 32 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 36 36 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 37 37 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 38 38 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 39 39 H 1.09002 * 109.59261 * 246.15867 * 9 8 6 40 40 H 1.09004 * 109.58991 * 6.43960 * 9 8 6 41 41 H 1.09003 * 109.50021 * 174.58848 * 10 9 8 42 42 H 1.08997 * 109.49345 * 294.68662 * 10 9 8 43 43 H 0.97001 * 119.99579 * 25.00427 * 13 11 10 44 44 H 1.09001 * 109.46901 * 300.00423 * 16 14 13 45 45 H 1.08999 * 109.47345 * 60.00321 * 16 14 13 46 46 H 1.09002 * 109.46589 * 300.00029 * 17 16 14 47 47 H 1.08991 * 109.46986 * 60.00120 * 17 16 14 48 48 H 0.97005 * 120.00125 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.58446 * 353.41546 * 29 8 6 50 50 H 1.09002 * 109.58874 * 113.84099 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6714 -4.0679 2.6036 10 6 2.9341 -4.9073 2.8227 11 6 3.7359 -4.3208 3.9868 12 1 3.1188 -4.3128 4.8853 13 7 4.9274 -5.1405 4.2206 14 6 5.5048 -5.1585 5.4383 15 8 5.0376 -4.4964 6.3407 16 6 6.7308 -6.0012 5.6786 17 6 7.1813 -5.8433 7.1323 18 6 8.4077 -6.6856 7.3724 19 1 8.8243 -7.2742 6.5685 20 6 8.9983 -6.7039 8.6181 21 7 8.4912 -5.9867 9.5968 22 14 10.5180 -7.7484 8.9159 23 1 11.7341 -6.9473 8.6250 24 1 10.5443 -8.1913 10.3331 25 1 10.4838 -8.9370 8.0265 26 6 4.1599 -2.8902 3.6470 27 1 4.7565 -2.8945 2.7348 28 9 4.9189 -2.3658 4.6987 29 6 2.9158 -2.0297 3.4344 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2488 39 1 1.0195 -4.1549 3.4728 40 1 1.1456 -4.4198 1.7160 41 1 2.6524 -5.9342 3.0556 42 1 3.5421 -4.8925 1.9182 43 1 5.3009 -5.6703 3.4989 44 1 6.4965 -7.0476 5.4827 45 1 7.5306 -5.6772 5.0128 46 1 7.4154 -4.7970 7.3284 47 1 6.3813 -6.1676 7.7978 48 1 8.9070 -5.9993 10.4732 49 1 3.2130 -1.0378 3.0938 50 1 2.3674 -1.9469 4.3728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608126731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:41 Heat of formation + Delta-G solvation = -177.880328 kcal Electronic energy + Delta-G solvation = -31194.416004 eV Core-core repulsion = 26749.823919 eV Total energy + Delta-G solvation = -4444.592085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -47.56734 -41.26651 -39.52893 -38.47156 -36.81278 -34.93337 -34.15529 -33.42226 -31.65065 -31.02907 -30.40599 -27.78963 -27.75546 -26.32971 -24.99412 -23.81728 -22.58272 -21.49297 -20.99076 -19.84408 -19.42709 -18.41872 -17.19548 -16.87553 -16.64415 -16.42027 -15.94940 -15.76437 -15.67963 -15.50823 -15.07300 -14.69613 -14.44938 -14.40978 -14.20562 -13.83491 -13.63227 -13.23332 -12.98045 -12.80920 -12.77445 -12.57081 -12.42512 -12.28493 -12.25026 -12.21847 -12.07331 -11.83356 -11.70752 -11.37095 -11.33268 -11.14008 -10.98004 -10.89494 -10.74434 -10.58329 -10.34625 -9.93460 -9.64357 -9.33122 -9.12999 -8.95823 -8.84947 -8.30283 -5.94256 -3.98633 1.70019 2.43402 3.24412 3.29689 3.34371 3.37033 3.40896 3.43575 4.15391 4.22286 4.31003 4.36928 4.37884 4.48661 4.51070 4.63778 4.64758 4.81673 5.00539 5.08453 5.14710 5.15560 5.20424 5.26915 5.30986 5.34356 5.38783 5.40574 5.45376 5.46706 5.55122 5.61537 5.64638 5.88401 5.89823 5.91392 6.04192 6.08608 6.23863 6.25507 6.62253 6.89873 6.90886 7.76193 7.83773 7.89084 7.93469 8.09523 8.40573 8.79397 9.10056 9.64705 11.16629 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028331 B = 0.001931 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.081064 B =14495.859415 C =14812.444510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.361 6.361 6 C 0.658 3.342 7 O -0.566 6.566 8 N -0.594 5.594 9 C 0.128 3.872 10 C -0.140 4.140 11 C 0.119 3.881 12 H 0.100 0.900 13 N -0.742 5.742 14 C 0.511 3.489 15 O -0.519 6.519 16 C -0.129 4.129 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.070 3.930 27 H 0.084 0.916 28 F -0.186 7.186 29 C 0.090 3.910 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.398 0.602 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.024 0.976 47 H 0.023 0.977 48 H 0.261 0.739 49 H 0.105 0.895 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 10.662 -23.476 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.276 6.276 6 C 0.413 3.587 7 O -0.456 6.456 8 N -0.334 5.334 9 C 0.006 3.994 10 C -0.179 4.179 11 C 0.013 3.987 12 H 0.118 0.882 13 N -0.396 5.396 14 C 0.299 3.701 15 O -0.393 6.393 16 C -0.169 4.169 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.031 3.969 27 H 0.102 0.898 28 F -0.166 7.166 29 C -0.034 4.034 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.232 0.768 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.070 0.930 49 H 0.123 0.877 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.720 11.109 -22.866 30.988 hybrid contribution 1.149 -0.692 -0.107 1.346 sum -16.571 10.417 -22.973 30.181 Atomic orbital electron populations 1.22514 0.93911 1.05026 1.02571 1.22116 0.94421 0.91612 0.82008 1.21871 1.02410 0.92388 1.03212 1.22515 1.01660 1.03423 0.96449 1.86317 1.71370 1.23417 1.46477 1.17899 0.78630 0.80695 0.81461 1.90895 1.41365 1.70429 1.42864 1.46851 1.52630 1.12599 1.21348 1.21695 0.96305 0.77327 1.04036 1.22217 0.96688 1.00620 0.98345 1.21415 0.88483 0.89137 0.99687 0.88180 1.46225 1.30102 1.49406 1.13858 1.21587 0.85616 0.81905 0.80984 1.90686 1.63667 1.42141 1.42765 1.21858 0.92867 0.98135 1.03998 1.18895 0.95925 0.97950 0.87249 1.21223 1.11709 1.27452 0.96156 0.92643 1.25027 0.97415 0.95739 0.96250 1.69999 1.40259 1.40319 1.02187 0.86591 0.83365 0.80589 0.77388 1.20693 1.21236 1.19926 1.22188 0.91802 0.93891 0.89051 0.89838 1.92951 1.76844 1.87613 1.59217 1.22203 0.90828 0.97445 0.92951 0.92111 0.91093 0.89420 0.91348 0.90072 0.91368 0.89417 0.91078 0.92098 0.90160 0.87583 0.88476 0.90392 0.76781 0.90313 0.90318 0.95750 0.95843 0.92968 0.87682 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.37 37.16 0.31 -1.07 16 2 C 0.13 1.07 1.13 -90.62 -0.10 0.97 16 3 C -0.14 -0.81 8.85 37.16 0.33 -0.48 16 4 C -0.18 -1.40 8.37 37.15 0.31 -1.09 16 5 O -0.36 -3.56 8.53 -40.32 -0.34 -3.91 16 6 C 0.66 6.94 7.74 54.06 0.42 7.36 16 7 O -0.57 -6.76 11.29 -19.28 -0.22 -6.98 16 8 N -0.59 -5.47 2.98 -178.82 -0.53 -6.00 16 9 C 0.13 0.97 6.44 -3.71 -0.02 0.95 16 10 C -0.14 -1.04 5.55 -26.61 -0.15 -1.19 16 11 C 0.12 1.34 2.30 -67.89 -0.16 1.18 16 12 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 13 N -0.74 -9.73 5.07 -53.77 -0.27 -10.00 16 14 C 0.51 9.62 7.33 -10.99 -0.08 9.54 16 15 O -0.52 -12.05 14.56 5.56 0.08 -11.97 16 16 C -0.13 -2.59 5.64 -27.88 -0.16 -2.75 16 17 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 18 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 22 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.07 0.80 3.65 -26.84 -0.10 0.71 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 F -0.19 -3.06 15.41 2.25 0.03 -3.02 16 29 C 0.09 0.86 6.16 -3.94 -0.02 0.84 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.84 5.88 -51.93 -0.31 0.54 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.85 5.88 -51.93 -0.31 0.54 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.81 7.00 -51.93 -0.36 0.45 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 47 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.10 0.97 6.93 -51.93 -0.36 0.61 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -36.18 400.44 -7.83 -44.01 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.38 Total: -0.17 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 0.05 Total: 2.09 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.07 Total: -42.84 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.48 Total: -22.86 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.03 Total: -3.02 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.18 -7.83 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608126731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.868 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds