Wall clock time and date at job start Wed Apr 1 2020 03:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46968 * 2 1 4 4 C 1.53002 * 109.47205 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.46898 * 110.99923 * 66.03965 * 5 4 3 7 7 C 1.53000 * 109.46698 * 199.66262 * 6 5 4 8 8 O 1.42905 * 109.47029 * 63.84745 * 7 6 5 9 9 C 1.46898 * 110.99607 * 189.99714 * 5 4 3 10 10 C 1.53077 * 109.44379 * 309.23866 * 9 5 4 11 11 C 1.53187 * 109.29253 * 181.24166 * 10 9 5 12 12 N 1.46921 * 108.89491 * 305.57431 * 11 10 9 13 13 C 1.34775 * 120.63600 * 233.56650 * 12 11 10 14 14 O 1.21287 * 119.99544 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00472 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.47453 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00230 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99737 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99924 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47230 * 59.99837 * 21 19 17 23 23 H 1.48500 * 109.47120 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47346 * 299.99774 * 21 19 17 25 25 C 1.46928 * 118.73791 * 53.54340 * 12 11 10 26 26 C 1.53042 * 109.46179 * 69.44540 * 9 5 4 27 27 H 1.09003 * 109.46700 * 60.00216 * 1 2 3 28 28 H 1.09000 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47025 * 300.00238 * 1 2 3 30 30 H 1.08998 * 109.47025 * 239.99761 * 2 1 3 31 31 H 1.09002 * 109.47177 * 119.99998 * 2 1 3 32 32 H 1.08998 * 109.47442 * 60.00017 * 3 2 1 33 33 H 1.09003 * 109.47234 * 299.99457 * 3 2 1 34 34 H 1.08998 * 109.47120 * 59.99558 * 4 3 2 35 35 H 1.09003 * 109.46368 * 299.99726 * 4 3 2 36 36 H 1.08991 * 109.47525 * 319.66741 * 6 5 4 37 37 H 1.09004 * 109.47142 * 79.66918 * 6 5 4 38 38 H 1.09002 * 109.46930 * 183.84178 * 7 6 5 39 39 H 1.08998 * 109.47350 * 303.83873 * 7 6 5 40 40 H 0.96702 * 113.99761 * 180.02562 * 8 7 6 41 41 H 1.09008 * 109.45607 * 189.41856 * 9 5 4 42 42 H 1.08998 * 109.38764 * 61.36377 * 10 9 5 43 43 H 1.09002 * 109.61789 * 301.25432 * 10 9 5 44 44 H 1.09007 * 109.58438 * 185.72030 * 11 10 9 45 45 H 1.08995 * 109.59107 * 65.43539 * 11 10 9 46 46 H 1.09005 * 109.47008 * 299.99745 * 15 13 12 47 47 H 1.09001 * 109.47163 * 59.99259 * 15 13 12 48 48 H 0.96991 * 119.99921 * 180.02562 * 20 19 17 49 49 H 1.08997 * 109.58724 * 66.17547 * 25 12 11 50 50 H 1.09003 * 109.58930 * 186.46543 * 25 12 11 51 51 H 1.09004 * 109.49685 * 58.67621 * 26 9 5 52 52 H 1.08990 * 109.52165 * 298.59422 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8276 0.0000 6 6 3.7106 3.5088 1.2538 7 6 3.7801 5.0232 1.0477 8 8 2.7971 5.4191 0.0889 9 6 5.5084 2.8737 -0.2387 10 6 6.2140 1.9134 0.7221 11 6 7.7266 1.9872 0.4914 12 7 8.0041 1.7358 -0.9293 13 6 8.8794 0.7802 -1.2994 14 8 9.4471 0.1184 -0.4563 15 6 9.1538 0.5348 -2.7608 16 16 10.3647 -0.7997 -2.9316 17 6 10.4934 -0.8732 -4.6873 18 1 9.9092 -0.2026 -5.3001 19 6 11.3456 -1.7928 -5.2828 20 7 12.0579 -2.6097 -4.5359 21 14 11.4815 -1.8712 -7.1442 22 1 11.9498 -0.5605 -7.6620 23 1 12.4517 -2.9288 -7.5255 24 1 10.1515 -2.1862 -7.7249 25 6 7.3088 2.5457 -1.9389 26 6 5.8005 2.4632 -1.6838 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9286 0.8892 36 1 2.7000 3.2284 1.5505 37 1 4.4129 3.2157 2.0342 38 1 3.5879 5.5279 1.9945 39 1 4.7714 5.2956 0.6855 40 1 2.7842 6.3689 -0.0919 41 1 5.8724 3.8871 -0.0684 42 1 5.8670 0.8968 0.5373 43 1 5.9887 2.1939 1.7510 44 1 8.2263 1.2336 1.1002 45 1 8.0901 2.9777 0.7650 46 1 8.2279 0.2521 -3.2618 47 1 9.5491 1.4439 -3.2139 48 1 12.6537 -3.2521 -4.9520 49 1 7.6359 3.5828 -1.8641 50 1 7.5346 2.1622 -2.9339 51 1 5.2790 3.1353 -2.3654 52 1 5.4590 1.4414 -1.8483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657110063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:06 Heat of formation + Delta-G solvation = -91.677201 kcal Electronic energy + Delta-G solvation = -28783.994940 eV Core-core repulsion = 24909.354079 eV Total energy + Delta-G solvation = -3874.640861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.36868 -38.88477 -36.94023 -36.21177 -34.68747 -32.42348 -31.95176 -31.45840 -30.13446 -28.97840 -27.58007 -25.49636 -24.60838 -23.55640 -23.28607 -22.05540 -21.30376 -19.91175 -18.80494 -17.82172 -17.60196 -16.77569 -16.19021 -15.98785 -15.71997 -15.45450 -15.25069 -14.79810 -14.61404 -14.31443 -14.09159 -13.97750 -13.82289 -13.65486 -13.38491 -13.15598 -12.98066 -12.86262 -12.64742 -12.55744 -12.14015 -12.02806 -11.78462 -11.67075 -11.45621 -11.26272 -11.23256 -11.04806 -11.03256 -11.01425 -10.84782 -10.75253 -10.69069 -10.49883 -10.20431 -9.80524 -9.34684 -9.05314 -8.55860 -8.41051 -8.22175 -6.49615 -6.20802 -3.91532 2.94593 3.05583 3.24058 3.26549 3.29763 3.52314 3.60811 3.97876 4.21029 4.45542 4.53797 4.62805 4.71315 4.74095 4.83171 4.91201 4.91526 4.99198 5.04185 5.05717 5.06735 5.14182 5.17106 5.22241 5.28892 5.37694 5.43650 5.44598 5.47368 5.55707 5.59686 5.62350 5.65490 5.73197 5.74607 5.77125 5.86614 5.88193 5.90085 5.98335 6.06418 6.08388 6.12668 6.15846 6.65809 6.85138 6.87111 7.38869 7.57049 7.60198 8.35698 8.57265 9.24297 10.86603 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002308 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.899229 B =12126.603233 C =12928.927335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.113 4.113 4 C 0.050 3.950 5 N -0.520 5.520 6 C 0.046 3.954 7 C 0.083 3.917 8 O -0.558 6.558 9 C 0.085 3.915 10 C -0.167 4.167 11 C 0.119 3.881 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.109 3.891 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.372 0.628 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.083 0.917 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.395 15.855 11.568 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.077 4.077 5 N -0.242 5.242 6 C -0.082 4.082 7 C 0.005 3.995 8 O -0.362 6.362 9 C -0.023 4.023 10 C -0.207 4.207 11 C -0.005 4.005 12 N -0.356 5.356 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.015 4.015 26 C -0.162 4.162 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.218 0.782 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.110 0.890 51 H 0.102 0.898 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.773 14.319 12.444 28.132 hybrid contribution -0.042 0.952 -1.431 1.719 sum -20.815 15.271 11.013 28.067 Atomic orbital electron populations 1.21749 0.95821 1.01485 1.01739 1.21511 0.95919 0.96870 1.02087 1.21623 0.94516 0.96312 1.02675 1.22212 0.95381 0.88936 1.01191 1.62180 1.12652 1.15636 1.33750 1.22244 1.01842 0.93054 0.91090 1.22161 0.91444 0.94825 0.91082 1.86603 1.58152 1.28341 1.63093 1.21757 0.86592 0.98888 0.95111 1.22634 0.96504 1.01560 1.00000 1.21378 0.94583 1.01767 0.82766 1.48115 1.43956 1.37141 1.06423 1.20340 0.77864 0.78376 0.91085 1.90687 1.48832 1.46764 1.53019 1.23549 1.05782 1.06311 0.94411 1.85398 1.49834 1.39686 1.08599 1.22815 1.30296 1.23905 0.91299 0.90992 1.24989 0.94678 0.94632 0.99274 1.70007 1.24907 1.19788 1.35617 0.86228 0.78138 0.77982 0.83179 1.19934 1.20822 1.19918 1.21726 0.91392 0.95539 0.92825 1.21940 0.95405 1.02802 0.96032 0.92681 0.92847 0.92953 0.91842 0.92272 0.92215 0.91033 0.90349 0.94715 0.89840 0.93099 0.93837 0.93779 0.78218 0.90064 0.90895 0.91160 0.88960 0.92040 0.89280 0.89277 0.92139 0.91533 0.88959 0.89821 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -0.94 5.19 -26.73 -0.14 -1.08 16 4 C 0.05 0.45 3.80 -3.82 -0.01 0.44 16 5 N -0.52 -4.60 4.29 -226.57 -0.97 -5.57 16 6 C 0.05 0.35 5.14 -3.82 -0.02 0.33 16 7 C 0.08 0.56 7.23 37.16 0.27 0.83 16 8 O -0.56 -4.47 13.59 -35.23 -0.48 -4.95 16 9 C 0.09 0.76 2.04 -67.65 -0.14 0.62 16 10 C -0.17 -1.63 4.56 -26.60 -0.12 -1.75 16 11 C 0.12 1.43 6.43 -3.72 -0.02 1.40 16 12 N -0.62 -8.79 2.97 -172.77 -0.51 -9.31 16 13 C 0.54 10.27 7.72 -10.99 -0.08 10.19 16 14 O -0.52 -11.97 15.28 5.55 0.08 -11.88 16 15 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 26 C -0.12 -1.20 5.35 -26.61 -0.14 -1.34 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 6.25 -51.93 -0.32 0.16 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.78 6.29 -51.93 -0.33 0.45 16 35 H 0.03 0.32 6.86 -51.93 -0.36 -0.04 16 36 H 0.08 0.66 5.88 -51.93 -0.31 0.36 16 37 H 0.05 0.35 6.36 -51.93 -0.33 0.02 16 38 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.04 0.29 6.67 -51.93 -0.35 -0.06 16 40 H 0.37 1.42 9.12 45.56 0.42 1.84 16 41 H 0.08 0.69 6.52 -51.92 -0.34 0.36 16 42 H 0.07 0.82 6.61 -51.93 -0.34 0.48 16 43 H 0.07 0.59 6.59 -51.93 -0.34 0.25 16 44 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 47 H 0.09 1.69 7.94 -51.91 -0.41 1.28 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.05 5.93 -51.93 -0.31 0.75 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.07 0.76 6.55 -51.93 -0.34 0.42 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -34.88 409.72 -10.27 -45.15 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.19 Total: 0.28 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 0.13 Total: -6.88 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.75 Total: -40.41 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.39 Total: -16.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.88 -10.27 -45.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657110063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.527 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds