Wall clock time and date at job start Wed Apr 1 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32994 * 120.00093 * 2 1 4 4 C 1.50697 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.47104 * 119.99875 * 179.97438 * 3 2 1 6 6 O 1.21609 * 120.00277 * 0.02562 * 5 3 2 7 7 N 1.34782 * 119.99659 * 180.02562 * 5 3 2 8 8 C 1.46503 * 119.99741 * 180.02562 * 7 5 3 9 9 H 1.08996 * 110.90355 * 322.58954 * 8 7 5 10 10 C 1.55143 * 110.98869 * 86.45362 * 8 7 5 11 11 C 1.54321 * 103.01737 * 153.74414 * 10 8 7 12 12 N 1.47446 * 107.23033 * 337.71947 * 11 10 8 13 13 C 1.46902 * 110.99701 * 236.74047 * 12 11 10 14 14 C 1.50709 * 109.47137 * 290.12763 * 13 12 11 15 15 C 1.38298 * 119.93080 * 269.72473 * 14 13 12 16 16 C 1.38095 * 120.07149 * 179.72422 * 15 14 13 17 17 C 1.38879 * 119.92546 * 0.56960 * 16 15 14 18 18 O 1.35754 * 120.06585 * 179.67929 * 17 16 15 19 19 C 1.34836 * 116.99834 * 174.49203 * 18 17 16 20 20 H 1.08001 * 119.99973 * 5.05862 * 19 18 17 21 21 C 1.38650 * 119.99740 * 185.06075 * 19 18 17 22 22 N 1.31554 * 120.00542 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99809 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46839 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47061 * 119.99939 * 23 21 19 26 26 H 1.48501 * 109.47006 * 240.00132 * 23 21 19 27 27 C 1.38879 * 119.86576 * 359.70791 * 17 16 15 28 28 C 1.38099 * 119.92953 * 359.97438 * 27 17 16 29 29 C 1.47847 * 108.57123 * 359.00497 * 12 11 10 30 30 H 1.08997 * 109.47166 * 300.00020 * 1 2 3 31 31 H 1.09000 * 109.46742 * 59.99839 * 1 2 3 32 32 H 1.08998 * 109.46884 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.00181 * 179.97438 * 2 1 3 34 34 H 1.09007 * 109.46611 * 269.99218 * 4 3 2 35 35 H 1.08997 * 109.47616 * 29.99215 * 4 3 2 36 36 H 1.09005 * 109.47319 * 150.00129 * 4 3 2 37 37 H 0.97000 * 120.00315 * 0.02562 * 7 5 3 38 38 H 1.08996 * 110.70773 * 35.36351 * 10 8 7 39 39 H 1.08997 * 110.70812 * 272.12542 * 10 8 7 40 40 H 1.09004 * 109.88626 * 97.11968 * 11 10 8 41 41 H 1.08996 * 109.89223 * 218.14747 * 11 10 8 42 42 H 1.09001 * 109.47130 * 50.12666 * 13 12 11 43 43 H 1.08995 * 109.47693 * 170.12358 * 13 12 11 44 44 H 1.08007 * 119.96027 * 359.97438 * 15 14 13 45 45 H 1.07994 * 120.04025 * 180.27262 * 16 15 14 46 46 H 0.96998 * 120.00420 * 180.02562 * 22 21 19 47 47 H 1.08002 * 120.03680 * 180.02562 * 27 17 16 48 48 H 1.07998 * 119.96662 * 180.02562 * 28 27 17 49 49 H 1.09001 * 110.36988 * 142.92492 * 29 12 11 50 50 H 1.08990 * 110.37391 * 265.27012 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3169 2.3190 0.0011 8 6 5.7819 2.3189 0.0011 9 1 6.1708 1.5099 0.6193 10 6 6.3376 2.2300 -1.4447 11 6 7.7211 2.9035 -1.3274 12 7 7.6832 3.7751 -0.1387 13 6 8.0131 5.1623 -0.4924 14 6 9.4726 5.2544 -0.8562 15 6 10.4115 5.5297 0.1213 16 6 11.7503 5.6091 -0.2079 17 6 12.1522 5.4239 -1.5243 18 8 13.4669 5.5078 -1.8522 19 6 13.8013 5.2057 -3.1230 20 1 13.0299 4.9926 -3.8483 21 6 15.1354 5.1685 -3.4986 22 7 16.0751 5.4275 -2.6151 23 14 15.5988 4.7491 -5.2590 24 1 14.3664 4.4993 -6.0491 25 1 16.3493 5.8825 -5.8567 26 1 16.4489 3.5315 -5.2705 27 6 11.2065 5.1533 -2.5047 28 6 9.8698 5.0687 -2.1679 29 6 6.3368 3.6885 0.4659 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.0471 -0.9353 0.0004 34 1 1.2366 2.7717 -1.0270 35 1 0.4662 2.3264 0.5146 36 1 2.0078 3.2164 0.5144 37 1 3.8319 3.1590 0.0015 38 1 5.6994 2.7785 -2.1373 39 1 6.4404 1.1901 -1.7548 40 1 8.4940 2.1445 -1.2061 41 1 7.9214 3.4972 -2.2193 42 1 7.4063 5.4747 -1.3423 43 1 7.8089 5.8125 0.3582 44 1 10.0976 5.6787 1.1439 45 1 12.4834 5.8197 0.5566 46 1 17.0084 5.4019 -2.8779 47 1 11.5160 5.0084 -3.5292 48 1 9.1339 4.8578 -2.9297 49 1 6.4064 3.7204 1.5533 50 1 5.7043 4.4977 0.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665452917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:35 Heat of formation + Delta-G solvation = -19.665680 kcal Electronic energy + Delta-G solvation = -28735.830852 eV Core-core repulsion = 24728.868694 eV Total energy + Delta-G solvation = -4006.962158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.43347 -39.31601 -38.54752 -36.58046 -35.90614 -34.67311 -32.40815 -31.63776 -30.21513 -29.87150 -29.22988 -27.99028 -26.60364 -25.58786 -24.44607 -22.62465 -21.95617 -21.28947 -21.00399 -20.04805 -18.96514 -17.96006 -17.44520 -16.91525 -16.84323 -15.95912 -15.40565 -15.30398 -14.82556 -14.58732 -14.48480 -14.12469 -14.05350 -13.90644 -13.70707 -13.55186 -13.44092 -13.19649 -13.11062 -12.88185 -12.70970 -12.57901 -12.53756 -12.32149 -11.87297 -11.74397 -11.69754 -11.61248 -11.41984 -11.21379 -10.87725 -10.76806 -10.57637 -10.50519 -10.40635 -10.18524 -9.55241 -9.31522 -9.28855 -8.82857 -8.31342 -8.14733 -7.16281 -6.43993 -4.02795 0.97450 2.24695 2.28340 2.81123 2.94930 3.12613 3.14454 3.19783 3.97218 4.01991 4.29577 4.38343 4.43119 4.54050 4.69150 4.70478 4.77089 4.89136 4.98310 5.07519 5.11115 5.13393 5.18779 5.19353 5.29377 5.33460 5.36390 5.39109 5.43286 5.47365 5.62811 5.73516 5.77216 5.82597 5.89655 5.92354 5.97099 6.05956 6.10833 6.23447 6.24793 6.43923 6.72275 6.90390 6.91699 7.04304 7.10691 7.19713 7.28996 7.41027 7.46180 7.85005 7.92687 8.01175 9.01841 9.72373 10.74136 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.001685 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.505370 B =16616.002729 C =17294.691680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.118 4.118 5 C 0.554 3.446 6 O -0.541 6.541 7 N -0.718 5.718 8 C 0.136 3.864 9 H 0.104 0.896 10 C -0.152 4.152 11 C 0.044 3.956 12 N -0.518 5.518 13 C 0.110 3.890 14 C -0.179 4.179 15 C -0.052 4.052 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.234 4.234 28 C -0.064 4.064 29 C 0.038 3.962 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.269 0.731 47 H 0.125 0.875 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.440 -4.543 4.620 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.175 4.175 5 C 0.343 3.657 6 O -0.419 6.419 7 N -0.370 5.370 8 C 0.031 3.969 9 H 0.122 0.878 10 C -0.192 4.192 11 C -0.084 4.084 12 N -0.242 5.242 13 C -0.017 4.017 14 C -0.181 4.181 15 C -0.071 4.071 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.253 4.253 28 C -0.083 4.083 29 C -0.091 4.091 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.143 0.857 48 H 0.120 0.880 49 H 0.104 0.896 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -29.147 -5.357 5.114 30.073 hybrid contribution -0.479 0.473 -1.595 1.731 sum -29.626 -4.884 3.519 30.231 Atomic orbital electron populations 1.21002 0.92044 1.03185 1.02607 1.23607 0.96319 0.98000 0.91290 1.21418 0.92611 0.96864 1.08859 1.20826 1.00154 0.93942 1.02535 1.18402 0.87734 0.83650 0.75917 1.90804 1.70079 1.31192 1.49832 1.45876 1.06923 1.08687 1.75508 1.22127 0.78778 0.98918 0.97116 0.87814 1.23188 0.97106 1.02234 0.96624 1.22837 0.96226 0.96705 0.92594 1.63701 1.24520 1.08898 1.27083 1.20970 0.93574 0.88255 0.98909 1.19026 0.93717 1.11595 0.93722 1.20442 0.91718 0.97287 0.97673 1.20216 0.95796 1.11088 0.94200 1.19399 0.85243 0.92218 0.92924 1.83982 1.18366 1.74785 1.31084 1.21367 0.92744 1.48713 0.83919 0.89058 1.25282 0.94479 0.96743 1.00009 1.70045 1.00490 1.45176 1.34027 0.85657 0.79020 0.78389 0.80410 1.19143 1.20162 1.20133 1.21111 0.92876 1.11197 1.00166 1.20582 0.94953 0.97851 0.94932 1.23224 0.90044 0.94998 1.00815 0.90576 0.90700 0.91315 0.85556 0.90922 0.90815 0.91797 0.76493 0.91459 0.90253 0.90064 0.91783 0.94787 0.90826 0.87093 0.86575 0.92088 0.85686 0.88027 0.89573 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 8.91 36.01 0.32 -0.19 16 2 C -0.07 -0.50 9.84 -36.13 -0.36 -0.85 16 3 C -0.19 -1.44 6.00 -102.85 -0.62 -2.06 16 4 C -0.12 -0.50 9.14 36.00 0.33 -0.17 16 5 C 0.55 5.79 7.75 -12.66 -0.10 5.69 16 6 O -0.54 -7.84 15.96 5.27 0.08 -7.76 16 7 N -0.72 -6.05 5.18 -52.91 -0.27 -6.33 16 8 C 0.14 1.38 3.31 -65.79 -0.22 1.16 16 9 H 0.10 1.27 7.73 -51.93 -0.40 0.86 16 10 C -0.15 -1.64 6.64 -24.91 -0.17 -1.81 16 11 C 0.04 0.55 6.25 -2.83 -0.02 0.54 16 12 N -0.52 -6.48 5.15 -232.68 -1.20 -7.68 16 13 C 0.11 1.43 4.75 -4.97 -0.02 1.40 16 14 C -0.18 -3.00 5.11 -104.57 -0.53 -3.54 16 15 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 16 C -0.19 -4.12 9.99 -39.40 -0.39 -4.52 16 17 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 18 O -0.18 -5.15 9.76 0.02 0.00 -5.15 16 19 C -0.39 -11.00 9.49 30.88 0.29 -10.70 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 23 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 28 C -0.06 -1.16 8.73 -39.61 -0.35 -1.51 16 29 C 0.04 0.36 6.31 -2.30 -0.01 0.35 16 30 H 0.08 0.23 7.40 -51.93 -0.38 -0.16 16 31 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.13 1.04 7.49 -52.48 -0.39 0.65 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.23 6.49 -51.93 -0.34 -0.11 16 36 H 0.06 0.22 6.70 -51.93 -0.35 -0.13 16 37 H 0.40 2.29 6.61 -40.82 -0.27 2.02 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.82 5.50 -51.93 -0.29 0.53 16 42 H 0.03 0.41 7.91 -51.93 -0.41 0.00 16 43 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 45 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 48 H 0.10 1.58 6.91 -52.49 -0.36 1.21 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 LS Contribution 404.45 15.07 6.09 6.09 Total: -1.00 -33.27 404.45 -10.01 -43.28 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.51 Total: 5.04 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -2.94 Total: -18.46 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.71 Total: -38.68 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.27 -10.01 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665452917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.612 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds