Wall clock time and date at job start Wed Apr 1 2020 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32994 * 120.00093 * 2 1 4 4 C 1.50697 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.47104 * 119.99875 * 179.97438 * 3 2 1 6 6 O 1.21609 * 120.00277 * 0.02562 * 5 3 2 7 7 N 1.34782 * 119.99659 * 180.02562 * 5 3 2 8 8 C 1.46503 * 119.99741 * 180.02562 * 7 5 3 9 9 H 1.08996 * 110.90355 * 322.58954 * 8 7 5 10 10 C 1.55143 * 110.98869 * 86.45362 * 8 7 5 11 11 C 1.54321 * 103.01737 * 153.74414 * 10 8 7 12 12 N 1.47446 * 107.23033 * 337.71947 * 11 10 8 13 13 C 1.46902 * 110.99701 * 236.74047 * 12 11 10 14 14 C 1.50709 * 109.47137 * 290.12763 * 13 12 11 15 15 C 1.38298 * 119.93080 * 269.72473 * 14 13 12 16 16 C 1.38095 * 120.07149 * 179.72422 * 15 14 13 17 17 C 1.38879 * 119.92546 * 0.56960 * 16 15 14 18 18 O 1.35754 * 120.06585 * 179.67929 * 17 16 15 19 19 C 1.34836 * 116.99834 * 174.49203 * 18 17 16 20 20 H 1.08001 * 119.99973 * 5.05862 * 19 18 17 21 21 C 1.38650 * 119.99740 * 185.06075 * 19 18 17 22 22 N 1.31554 * 120.00542 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99809 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46839 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47061 * 119.99939 * 23 21 19 26 26 H 1.48501 * 109.47006 * 240.00132 * 23 21 19 27 27 C 1.38879 * 119.86576 * 359.70791 * 17 16 15 28 28 C 1.38099 * 119.92953 * 359.97438 * 27 17 16 29 29 C 1.47847 * 108.57123 * 359.00497 * 12 11 10 30 30 H 1.08997 * 109.47166 * 300.00020 * 1 2 3 31 31 H 1.09000 * 109.46742 * 59.99839 * 1 2 3 32 32 H 1.08998 * 109.46884 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.00181 * 179.97438 * 2 1 3 34 34 H 1.09007 * 109.46611 * 269.99218 * 4 3 2 35 35 H 1.08997 * 109.47616 * 29.99215 * 4 3 2 36 36 H 1.09005 * 109.47319 * 150.00129 * 4 3 2 37 37 H 0.97000 * 120.00315 * 0.02562 * 7 5 3 38 38 H 1.08996 * 110.70773 * 35.36351 * 10 8 7 39 39 H 1.08997 * 110.70812 * 272.12542 * 10 8 7 40 40 H 1.09004 * 109.88626 * 97.11968 * 11 10 8 41 41 H 1.08996 * 109.89223 * 218.14747 * 11 10 8 42 42 H 1.09001 * 109.47130 * 50.12666 * 13 12 11 43 43 H 1.08995 * 109.47693 * 170.12358 * 13 12 11 44 44 H 1.08007 * 119.96027 * 359.97438 * 15 14 13 45 45 H 1.07994 * 120.04025 * 180.27262 * 16 15 14 46 46 H 0.96998 * 120.00420 * 180.02562 * 22 21 19 47 47 H 1.08002 * 120.03680 * 180.02562 * 27 17 16 48 48 H 1.07998 * 119.96662 * 180.02562 * 28 27 17 49 49 H 1.09001 * 110.36988 * 142.92492 * 29 12 11 50 50 H 1.08990 * 110.37391 * 265.27012 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0985 0.0006 7 7 4.3169 2.3190 0.0011 8 6 5.7819 2.3189 0.0011 9 1 6.1708 1.5099 0.6193 10 6 6.3376 2.2300 -1.4447 11 6 7.7211 2.9035 -1.3274 12 7 7.6832 3.7751 -0.1387 13 6 8.0131 5.1623 -0.4924 14 6 9.4726 5.2544 -0.8562 15 6 10.4115 5.5297 0.1213 16 6 11.7503 5.6091 -0.2079 17 6 12.1522 5.4239 -1.5243 18 8 13.4669 5.5078 -1.8522 19 6 13.8013 5.2057 -3.1230 20 1 13.0299 4.9926 -3.8483 21 6 15.1354 5.1685 -3.4986 22 7 16.0751 5.4275 -2.6151 23 14 15.5988 4.7491 -5.2590 24 1 14.3664 4.4993 -6.0491 25 1 16.3493 5.8825 -5.8567 26 1 16.4489 3.5315 -5.2705 27 6 11.2065 5.1533 -2.5047 28 6 9.8698 5.0687 -2.1679 29 6 6.3368 3.6885 0.4659 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.0471 -0.9353 0.0004 34 1 1.2366 2.7717 -1.0270 35 1 0.4662 2.3264 0.5146 36 1 2.0078 3.2164 0.5144 37 1 3.8319 3.1590 0.0015 38 1 5.6994 2.7785 -2.1373 39 1 6.4404 1.1901 -1.7548 40 1 8.4940 2.1445 -1.2061 41 1 7.9214 3.4972 -2.2193 42 1 7.4063 5.4747 -1.3423 43 1 7.8089 5.8125 0.3582 44 1 10.0976 5.6787 1.1439 45 1 12.4834 5.8197 0.5566 46 1 17.0084 5.4019 -2.8779 47 1 11.5160 5.0084 -3.5292 48 1 9.1339 4.8578 -2.9297 49 1 6.4064 3.7204 1.5533 50 1 5.7043 4.4977 0.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665452917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:34 Heat of formation + Delta-G solvation = -42.121430 kcal Electronic energy + Delta-G solvation = -28736.804607 eV Core-core repulsion = 24728.868694 eV Total energy + Delta-G solvation = -4007.935913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.28745 -40.78724 -39.75137 -38.16110 -36.46941 -35.63129 -34.31849 -32.81154 -31.80477 -30.50407 -30.32859 -28.90334 -27.48574 -27.00821 -25.76394 -23.69066 -23.24723 -22.46803 -22.00386 -21.26241 -19.82580 -19.60922 -18.78553 -18.02443 -17.71317 -16.90201 -16.46158 -16.41246 -16.07386 -16.07234 -15.94079 -15.49468 -15.13849 -14.98413 -14.62559 -14.51288 -14.43339 -14.24395 -14.21497 -13.81404 -13.79755 -13.48406 -13.36388 -13.31701 -12.99269 -12.88939 -12.74565 -12.56869 -12.46886 -12.33792 -12.18813 -12.16854 -12.11774 -11.90486 -11.72378 -11.14042 -11.00123 -10.79886 -10.25585 -9.89387 -9.74327 -9.27824 -8.88113 -8.47112 -6.15200 0.37891 0.62905 0.69591 1.34083 1.42486 1.52375 2.07258 2.17199 2.23266 2.78515 3.07039 3.30352 3.54356 3.57449 3.66002 3.77700 3.99924 4.01475 4.04994 4.08412 4.23942 4.27543 4.30772 4.34485 4.41354 4.47306 4.61825 4.67088 4.74768 4.75807 4.79179 4.83434 4.85409 4.91195 4.95724 5.01569 5.07341 5.10977 5.14361 5.16480 5.18614 5.33064 5.40442 5.51101 5.59250 5.66108 5.73280 5.79879 6.02771 6.04796 6.10105 6.27053 6.52807 6.97815 7.20171 7.79595 8.76460 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.001685 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.505370 B =16616.002729 C =17294.691680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.204 4.204 4 C -0.114 4.114 5 C 0.546 3.454 6 O -0.593 6.593 7 N -0.702 5.702 8 C 0.139 3.861 9 H 0.077 0.923 10 C -0.143 4.143 11 C 0.045 3.955 12 N -0.534 5.534 13 C 0.112 3.888 14 C -0.153 4.153 15 C -0.047 4.047 16 C -0.207 4.207 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.244 4.244 28 C -0.062 4.062 29 C 0.047 3.953 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.416 0.584 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.147 0.853 45 H 0.111 0.889 46 H 0.272 0.728 47 H 0.115 0.885 48 H 0.135 0.865 49 H 0.095 0.905 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.207 -3.558 4.403 35.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.170 4.170 5 C 0.336 3.664 6 O -0.475 6.475 7 N -0.354 5.354 8 C 0.033 3.967 9 H 0.095 0.905 10 C -0.183 4.183 11 C -0.083 4.083 12 N -0.259 5.259 13 C -0.015 4.015 14 C -0.154 4.154 15 C -0.066 4.066 16 C -0.226 4.226 17 C 0.062 3.938 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.263 4.263 28 C -0.080 4.080 29 C -0.081 4.081 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.255 0.745 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.165 0.835 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.152 0.848 49 H 0.113 0.887 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -34.000 -4.333 4.920 34.626 hybrid contribution 0.659 0.107 -1.330 1.488 sum -33.341 -4.226 3.590 33.799 Atomic orbital electron populations 1.21041 0.89439 1.04022 1.03799 1.23791 0.98158 0.97040 0.90454 1.21528 0.90854 0.98710 1.09655 1.20879 1.00484 0.92104 1.03551 1.19016 0.89149 0.83257 0.74932 1.90781 1.71329 1.33056 1.52358 1.45702 1.06185 1.09064 1.74460 1.21917 0.79745 0.98806 0.96220 0.90522 1.23082 0.96583 1.01262 0.97384 1.22745 0.96424 0.96384 0.92722 1.63564 1.26923 1.08428 1.26992 1.21014 0.90457 0.89045 1.00936 1.19601 0.96142 1.06983 0.92675 1.20861 0.90174 0.95746 0.99798 1.20477 0.97614 1.11376 0.93115 1.19954 0.84582 0.94404 0.94824 1.83943 1.20830 1.77845 1.31578 1.21845 0.93576 1.49044 0.84386 0.88209 1.26577 0.94020 0.96395 1.05076 1.70189 1.00959 1.48006 1.36783 0.84536 0.79095 0.78345 0.74251 1.17542 1.19187 1.19448 1.21209 0.94261 1.11534 0.99294 1.20936 0.93824 0.96595 0.96641 1.23213 0.88706 0.95023 1.01138 0.89082 0.89386 0.90842 0.87966 0.89919 0.89304 0.90706 0.74463 0.89887 0.92005 0.92465 0.91673 0.92633 0.88308 0.83536 0.87127 0.91882 0.86686 0.84754 0.88654 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 8.91 71.24 0.63 -0.02 16 2 C -0.07 -0.94 9.84 24.52 0.24 -0.70 16 3 C -0.20 -2.66 6.00 -18.70 -0.11 -2.77 16 4 C -0.11 -0.54 9.14 71.23 0.65 0.11 16 5 C 0.55 10.88 7.75 86.57 0.67 11.55 16 6 O -0.59 -17.68 15.96 -4.06 -0.06 -17.74 16 7 N -0.70 -10.09 5.18 -439.57 -2.28 -12.36 16 8 C 0.14 2.53 3.31 46.38 0.15 2.69 16 9 H 0.08 1.85 7.73 -2.39 -0.02 1.83 16 10 C -0.14 -2.83 6.64 31.78 0.21 -2.62 16 11 C 0.05 1.03 6.25 86.65 0.54 1.58 16 12 N -0.53 -11.36 5.15 -890.08 -4.58 -15.94 16 13 C 0.11 2.33 4.75 85.56 0.41 2.74 16 14 C -0.15 -4.61 5.11 -19.83 -0.10 -4.72 16 15 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 16 C -0.21 -8.96 9.99 22.39 0.22 -8.73 16 17 C 0.11 5.72 6.65 22.58 0.15 5.87 16 18 O -0.24 -14.48 9.76 -22.85 -0.22 -14.71 16 19 C -0.41 -24.49 9.49 67.92 0.64 -23.84 16 20 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 22 N -0.92 -57.42 13.67 21.61 0.30 -57.13 16 23 Si 1.02 43.64 29.55 68.60 2.03 45.67 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 C -0.24 -10.74 9.17 22.39 0.21 -10.53 16 28 C -0.06 -2.09 8.73 22.25 0.19 -1.89 16 29 C 0.05 0.69 6.31 86.77 0.55 1.24 16 30 H 0.09 0.24 7.40 -2.39 -0.02 0.22 16 31 H 0.09 0.27 8.10 -2.39 -0.02 0.25 16 32 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.10 1.76 7.49 -2.91 -0.02 1.74 16 34 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 35 H 0.09 0.19 6.49 -2.39 -0.02 0.17 16 36 H 0.07 0.19 6.70 -2.38 -0.02 0.17 16 37 H 0.42 3.10 6.61 -92.71 -0.61 2.49 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.06 1.46 5.50 -2.39 -0.01 1.44 16 42 H 0.06 0.99 7.91 -2.39 -0.02 0.97 16 43 H 0.10 1.67 8.01 -2.39 -0.02 1.65 16 44 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 45 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 48 H 0.13 3.69 6.91 -2.91 -0.02 3.67 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.08 0.76 7.67 -2.39 -0.02 0.74 16 Total: -1.00 -80.39 404.45 1.46 -78.92 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.34 Total: 25.62 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 5.94 Total: -32.33 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -6.56 Total: -85.43 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.29 Total: -32.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -80.39 1.46 -78.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665452917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.799 kcal (2) G-P(sol) polarization free energy of solvation -80.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds