Wall clock time and date at job start Wed Apr 1 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46757 * 194.65902 * 3 2 1 5 5 O 1.42905 * 109.47149 * 180.02562 * 4 3 2 6 6 C 1.35705 * 117.00115 * 179.97438 * 5 4 3 7 7 C 1.38995 * 119.91431 * 179.97438 * 6 5 4 8 8 C 1.37701 * 120.09033 * 180.02562 * 7 6 5 9 9 C 1.39726 * 119.91361 * 359.97438 * 8 7 6 10 10 C 1.47606 * 120.09018 * 180.02562 * 9 8 7 11 11 O 1.21579 * 119.99955 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47115 * 65.00068 * 14 13 12 16 16 N 1.46499 * 109.47066 * 305.00566 * 14 13 12 17 17 C 1.36938 * 120.00054 * 155.00265 * 16 14 13 18 18 H 1.08003 * 120.00114 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00272 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99558 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00137 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47566 * 59.99856 * 21 19 17 23 23 H 1.48500 * 109.47385 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47351 * 299.99466 * 21 19 17 25 25 C 1.53003 * 109.47495 * 184.99999 * 14 13 12 26 26 C 1.52999 * 109.46977 * 300.00210 * 25 14 13 27 27 C 1.53002 * 109.46755 * 60.00317 * 25 14 13 28 28 C 1.39739 * 119.82418 * 0.27861 * 9 8 7 29 29 C 1.37704 * 119.90870 * 359.46411 * 28 9 8 30 30 H 4.44648 * 5.63355 * 180.02562 * 4 1 2 31 31 H 1.09004 * 109.47184 * 74.66183 * 3 2 1 32 32 H 1.08997 * 109.47353 * 314.65616 * 3 2 1 33 33 H 1.08996 * 109.47193 * 59.99912 * 4 3 2 34 34 H 1.09000 * 109.47458 * 299.99899 * 4 3 2 35 35 H 1.08001 * 119.95476 * 359.97438 * 7 6 5 36 36 H 1.08006 * 120.03997 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 39 39 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 40 40 H 0.96999 * 120.00202 * 334.99029 * 16 14 13 41 41 H 0.97003 * 120.00024 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46914 * 179.97438 * 25 14 13 43 43 H 1.09000 * 109.46961 * 179.97438 * 26 25 14 44 44 H 1.08996 * 109.47443 * 299.99910 * 26 25 14 45 45 H 1.09001 * 109.46954 * 59.99896 * 26 25 14 46 46 H 1.08994 * 109.47199 * 60.00046 * 27 25 14 47 47 H 1.09000 * 109.47048 * 180.02562 * 27 25 14 48 48 H 1.09001 * 109.46743 * 299.99890 * 27 25 14 49 49 H 1.07994 * 120.04506 * 179.70619 * 28 9 8 50 50 H 1.07993 * 119.95909 * 180.25424 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.3965 0.3651 5 8 4.5844 1.3974 0.3645 6 6 5.1999 2.5676 0.6699 7 6 6.5880 2.6367 0.6877 8 6 7.2163 3.8221 0.9977 9 6 6.4566 4.9568 1.2940 10 6 7.1260 6.2296 1.6261 11 8 8.3401 6.2919 1.6417 12 7 6.3915 7.3231 1.9111 13 6 7.0558 8.5863 2.2414 14 6 6.0017 9.6591 2.5214 15 1 5.4363 9.3889 3.4134 16 7 5.0912 9.7593 1.3781 17 6 3.8188 10.2333 1.5555 18 1 3.4862 10.5328 2.5385 19 6 2.9559 10.3278 0.4723 20 7 3.3610 9.9623 -0.7255 21 14 1.2200 10.9736 0.7145 22 1 1.2768 12.3576 1.2496 23 1 0.5064 10.9759 -0.5878 24 1 0.4967 10.1012 1.6741 25 6 6.6916 11.0065 2.7438 26 6 7.6424 10.9017 3.9379 27 6 7.4851 11.3858 1.4917 28 6 5.0613 4.8819 1.2801 29 6 4.4405 3.6941 0.9640 30 1 -1.0502 -0.0005 0.0001 31 1 3.0095 -0.2710 -0.9911 32 1 3.0097 -0.7214 0.7310 33 1 2.7918 1.6682 1.3561 34 1 2.7917 2.1187 -0.3659 35 1 7.1746 1.7592 0.4590 36 1 8.2950 3.8748 1.0117 37 1 5.4228 7.2735 1.8983 38 1 7.6781 8.4491 3.1258 39 1 7.6791 8.8988 1.4035 40 1 5.3898 9.4902 0.4953 41 1 2.7582 10.0287 -1.4826 42 1 5.9405 11.7708 2.9428 43 1 8.1343 11.8615 4.0960 44 1 7.0772 10.6314 4.8298 45 1 8.3935 10.1374 3.7383 46 1 6.8077 11.4604 0.6411 47 1 7.9770 12.3455 1.6502 48 1 8.2361 10.6214 1.2922 49 1 4.4706 5.7554 1.5132 50 1 3.3622 3.6364 0.9491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667460057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:15 Heat of formation + Delta-G solvation = 4.058108 kcal Electronic energy + Delta-G solvation = -29249.168252 eV Core-core repulsion = 25243.234834 eV Total energy + Delta-G solvation = -4005.933418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.49217 -39.40144 -37.64616 -36.93274 -34.89002 -33.81550 -33.25700 -31.42563 -30.83297 -30.43548 -29.75056 -27.27269 -26.61302 -24.89176 -24.01197 -23.21161 -22.50148 -21.85650 -20.14628 -18.98828 -18.73450 -18.02521 -17.47279 -16.98611 -16.57494 -16.43494 -15.59378 -15.13217 -14.96758 -14.55117 -14.37027 -14.18734 -14.11798 -13.77973 -13.70375 -13.59555 -13.47333 -13.19131 -12.95009 -12.72059 -12.55172 -12.30279 -12.23683 -12.04054 -11.44990 -11.20288 -11.10188 -10.99407 -10.96493 -10.89508 -10.67532 -10.62248 -10.49393 -10.35814 -10.24954 -9.80397 -9.68822 -9.59519 -9.13604 -8.95961 -8.64721 -8.26749 -7.05425 -5.84405 -3.14399 0.93871 1.28413 2.22341 2.44429 2.96415 3.04918 3.37090 3.43008 3.43708 3.59545 3.95410 4.09287 4.51073 4.51444 4.56081 4.69761 4.80427 4.91438 5.01601 5.17064 5.28722 5.35188 5.37934 5.38376 5.42961 5.50685 5.54531 5.62777 5.63134 5.74578 5.83352 5.90826 5.98320 6.06234 6.10245 6.17950 6.22816 6.34141 6.37436 6.39156 6.47563 6.55928 6.64197 6.74379 6.89320 7.03900 7.06519 7.14564 7.20193 7.62870 7.96131 8.32814 8.58658 9.44945 9.99819 10.35883 11.37061 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008297 B = 0.002836 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.024892 B = 9872.339061 C =12729.166037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C -0.008 4.008 4 C 0.061 3.939 5 O -0.313 6.313 6 C 0.151 3.849 7 C -0.163 4.163 8 C -0.022 4.022 9 C -0.167 4.167 10 C 0.557 3.443 11 O -0.555 6.555 12 N -0.708 5.708 13 C 0.111 3.889 14 C 0.169 3.831 15 H 0.053 0.947 16 N -0.720 5.720 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.111 4.111 26 C -0.149 4.149 27 C -0.141 4.141 28 C -0.037 4.037 29 C -0.215 4.215 30 H 0.220 0.780 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.408 0.592 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.038 0.962 48 H 0.046 0.954 49 H 0.136 0.864 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -16.500 4.246 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.044 4.044 4 C -0.014 4.014 5 O -0.226 6.226 6 C 0.105 3.895 7 C -0.182 4.182 8 C -0.041 4.041 9 C -0.170 4.170 10 C 0.344 3.656 11 O -0.436 6.436 12 N -0.359 5.359 13 C -0.013 4.013 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.361 5.361 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.133 4.133 26 C -0.207 4.207 27 C -0.198 4.198 28 C -0.056 4.056 29 C -0.233 4.233 30 H 0.237 0.763 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.154 0.846 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.270 -16.554 4.251 17.241 hybrid contribution -1.909 0.614 -0.258 2.021 sum 0.361 -15.940 3.994 16.437 Atomic orbital electron populations 1.24999 0.95993 0.99073 1.00525 1.22589 0.93963 1.01812 1.01059 1.18421 0.84897 0.96611 1.04473 1.22728 0.78469 0.97829 1.02358 1.85937 1.20983 1.31279 1.84421 1.19188 0.92277 0.84446 0.93619 1.20344 0.91045 0.99267 1.07497 1.21054 1.00618 0.90084 0.92380 1.19939 0.93601 0.94875 1.08619 1.18116 0.86809 0.83625 0.77006 1.90725 1.13592 1.85510 1.53729 1.45926 1.11151 1.09685 1.69173 1.21831 0.95856 0.83019 1.00628 1.20519 0.89902 0.91210 0.92491 0.92929 1.42448 1.10597 1.77338 1.05734 1.19162 0.88514 1.35633 0.94103 0.91229 1.24714 0.98307 1.01994 0.95451 1.69652 1.35777 1.53392 0.98782 0.86327 0.84770 0.78833 0.76556 1.21317 1.21788 1.21339 1.21715 0.97237 1.00074 0.94224 1.21925 0.99444 1.00951 0.98347 1.21770 0.99597 0.99393 0.99038 1.21264 0.93537 0.97460 0.93332 1.21194 1.00385 0.93183 1.08586 0.76281 0.88313 0.88372 0.91194 0.91060 0.84643 0.84007 0.75437 0.91578 0.91267 0.77998 0.93422 0.90964 0.93532 0.93241 0.92893 0.91352 0.94274 0.93528 0.84619 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.64 13.34 -37.12 -0.50 -2.14 16 3 C -0.01 -0.05 6.07 -29.52 -0.18 -0.23 16 4 C 0.06 0.52 4.69 37.16 0.17 0.70 16 5 O -0.31 -3.31 10.12 -18.82 -0.19 -3.50 16 6 C 0.15 1.80 6.70 -39.02 -0.26 1.53 16 7 C -0.16 -1.91 9.97 -39.50 -0.39 -2.31 16 8 C -0.02 -0.30 9.58 -39.22 -0.38 -0.67 16 9 C -0.17 -2.51 5.87 -104.96 -0.62 -3.12 16 10 C 0.56 9.70 7.76 -12.44 -0.10 9.60 16 11 O -0.56 -11.03 16.34 5.30 0.09 -10.94 16 12 N -0.71 -12.07 5.34 -61.33 -0.33 -12.39 16 13 C 0.11 1.89 4.51 -4.05 -0.02 1.88 16 14 C 0.17 3.09 2.27 -67.93 -0.15 2.93 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -16.15 3.80 -53.43 -0.20 -16.36 16 17 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 18 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 21 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.11 -1.87 2.91 -90.62 -0.26 -2.13 16 26 C -0.15 -2.06 8.84 37.16 0.33 -1.73 16 27 C -0.14 -2.39 8.69 37.16 0.32 -2.06 16 28 C -0.04 -0.51 9.53 -39.22 -0.37 -0.89 16 29 C -0.21 -2.63 9.01 -39.49 -0.36 -2.99 16 30 H 0.22 0.96 7.80 -54.08 -0.42 0.54 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.56 7.65 -51.93 -0.40 0.17 16 34 H 0.07 0.61 7.65 -51.93 -0.40 0.22 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.80 7.64 -52.48 -0.40 1.40 16 37 H 0.41 6.93 6.16 -40.82 -0.25 6.68 16 38 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 39 H 0.07 1.27 6.18 -51.93 -0.32 0.94 16 40 H 0.39 9.51 7.80 -40.82 -0.32 9.19 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 46 H 0.07 1.35 7.60 -51.93 -0.39 0.96 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 49 H 0.14 1.85 6.39 -52.49 -0.34 1.51 16 50 H 0.13 1.39 6.28 -52.49 -0.33 1.06 16 LS Contribution 415.83 15.07 6.27 6.27 Total: -1.00 -30.36 415.83 -8.61 -38.97 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -7.51 Total: 16.43 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.44 Total: -9.11 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.19 Total: -54.37 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.10 Total: -14.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.36 -8.61 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667460057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.025 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds