Wall clock time and date at job start Wed Apr 1 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46757 * 194.65902 * 3 2 1 5 5 O 1.42905 * 109.47149 * 180.02562 * 4 3 2 6 6 C 1.35705 * 117.00115 * 179.97438 * 5 4 3 7 7 C 1.38995 * 119.91431 * 179.97438 * 6 5 4 8 8 C 1.37701 * 120.09033 * 180.02562 * 7 6 5 9 9 C 1.39726 * 119.91361 * 359.97438 * 8 7 6 10 10 C 1.47606 * 120.09018 * 180.02562 * 9 8 7 11 11 O 1.21579 * 119.99955 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47115 * 65.00068 * 14 13 12 16 16 N 1.46499 * 109.47066 * 305.00566 * 14 13 12 17 17 C 1.36938 * 120.00054 * 155.00265 * 16 14 13 18 18 H 1.08003 * 120.00114 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00272 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99558 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00137 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47566 * 59.99856 * 21 19 17 23 23 H 1.48500 * 109.47385 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47351 * 299.99466 * 21 19 17 25 25 C 1.53003 * 109.47495 * 184.99999 * 14 13 12 26 26 C 1.52999 * 109.46977 * 300.00210 * 25 14 13 27 27 C 1.53002 * 109.46755 * 60.00317 * 25 14 13 28 28 C 1.39739 * 119.82418 * 0.27861 * 9 8 7 29 29 C 1.37704 * 119.90870 * 359.46411 * 28 9 8 30 30 H 4.44648 * 5.63355 * 180.02562 * 4 1 2 31 31 H 1.09004 * 109.47184 * 74.66183 * 3 2 1 32 32 H 1.08997 * 109.47353 * 314.65616 * 3 2 1 33 33 H 1.08996 * 109.47193 * 59.99912 * 4 3 2 34 34 H 1.09000 * 109.47458 * 299.99899 * 4 3 2 35 35 H 1.08001 * 119.95476 * 359.97438 * 7 6 5 36 36 H 1.08006 * 120.03997 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 39 39 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 40 40 H 0.96999 * 120.00202 * 334.99029 * 16 14 13 41 41 H 0.97003 * 120.00024 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46914 * 179.97438 * 25 14 13 43 43 H 1.09000 * 109.46961 * 179.97438 * 26 25 14 44 44 H 1.08996 * 109.47443 * 299.99910 * 26 25 14 45 45 H 1.09001 * 109.46954 * 59.99896 * 26 25 14 46 46 H 1.08994 * 109.47199 * 60.00046 * 27 25 14 47 47 H 1.09000 * 109.47048 * 180.02562 * 27 25 14 48 48 H 1.09001 * 109.46743 * 299.99890 * 27 25 14 49 49 H 1.07994 * 120.04506 * 179.70619 * 28 9 8 50 50 H 1.07993 * 119.95909 * 180.25424 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.3965 0.3651 5 8 4.5844 1.3974 0.3645 6 6 5.1999 2.5676 0.6699 7 6 6.5880 2.6367 0.6877 8 6 7.2163 3.8221 0.9977 9 6 6.4566 4.9568 1.2940 10 6 7.1260 6.2296 1.6261 11 8 8.3401 6.2919 1.6417 12 7 6.3915 7.3231 1.9111 13 6 7.0558 8.5863 2.2414 14 6 6.0017 9.6591 2.5214 15 1 5.4363 9.3889 3.4134 16 7 5.0912 9.7593 1.3781 17 6 3.8188 10.2333 1.5555 18 1 3.4862 10.5328 2.5385 19 6 2.9559 10.3278 0.4723 20 7 3.3610 9.9623 -0.7255 21 14 1.2200 10.9736 0.7145 22 1 1.2768 12.3576 1.2496 23 1 0.5064 10.9759 -0.5878 24 1 0.4967 10.1012 1.6741 25 6 6.6916 11.0065 2.7438 26 6 7.6424 10.9017 3.9379 27 6 7.4851 11.3858 1.4917 28 6 5.0613 4.8819 1.2801 29 6 4.4405 3.6941 0.9640 30 1 -1.0502 -0.0005 0.0001 31 1 3.0095 -0.2710 -0.9911 32 1 3.0097 -0.7214 0.7310 33 1 2.7918 1.6682 1.3561 34 1 2.7917 2.1187 -0.3659 35 1 7.1746 1.7592 0.4590 36 1 8.2950 3.8748 1.0117 37 1 5.4228 7.2735 1.8983 38 1 7.6781 8.4491 3.1258 39 1 7.6791 8.8988 1.4035 40 1 5.3898 9.4902 0.4953 41 1 2.7582 10.0287 -1.4826 42 1 5.9405 11.7708 2.9428 43 1 8.1343 11.8615 4.0960 44 1 7.0772 10.6314 4.8298 45 1 8.3935 10.1374 3.7383 46 1 6.8077 11.4604 0.6411 47 1 7.9770 12.3455 1.6502 48 1 8.2361 10.6214 1.2922 49 1 4.4706 5.7554 1.5132 50 1 3.3622 3.6364 0.9491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667460057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:13 Heat of formation + Delta-G solvation = -12.506030 kcal Electronic energy + Delta-G solvation = -29249.886527 eV Core-core repulsion = 25243.234834 eV Total energy + Delta-G solvation = -4006.651693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.52066 -40.61000 -38.96158 -38.11570 -35.52679 -35.23846 -35.04042 -32.45386 -32.08625 -31.72749 -30.71819 -28.73780 -27.91073 -25.98228 -25.38108 -24.49231 -23.88680 -22.85761 -21.41457 -20.21752 -19.65793 -19.29394 -18.78128 -18.27649 -17.64451 -17.30550 -16.83417 -16.65313 -16.21510 -16.02946 -15.46837 -15.37417 -15.05422 -14.95537 -14.86093 -14.82788 -14.71327 -14.44694 -14.15322 -14.03254 -13.64790 -13.57234 -13.23188 -13.11828 -12.83340 -12.79049 -12.66196 -12.51048 -12.18895 -12.12462 -11.99163 -11.90640 -11.86097 -11.49945 -11.28443 -11.21887 -11.06791 -11.03228 -10.81384 -10.13483 -10.03814 -9.30070 -8.96070 -7.88408 -5.16519 -0.14508 0.28771 1.50217 1.51757 1.56821 1.57222 1.83467 1.86158 2.21095 2.28322 2.59231 2.82493 3.44768 3.55703 3.65169 3.76977 3.81934 3.89650 3.94574 3.94721 4.01245 4.17095 4.23593 4.28869 4.34377 4.38513 4.46780 4.53266 4.55317 4.73766 4.81810 4.83276 4.88882 4.92624 4.95311 5.07573 5.10748 5.11389 5.17154 5.21490 5.25273 5.30821 5.35033 5.47850 5.56418 5.58698 5.63537 5.69254 6.25104 6.31362 6.58193 6.63334 7.21380 7.39536 8.11760 8.37224 9.33680 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008297 B = 0.002836 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.024892 B = 9872.339061 C =12729.166037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.224 4.224 3 C -0.003 4.003 4 C 0.058 3.942 5 O -0.311 6.311 6 C 0.156 3.844 7 C -0.158 4.158 8 C -0.025 4.025 9 C -0.190 4.190 10 C 0.555 3.445 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.119 3.881 14 C 0.171 3.829 15 H 0.056 0.944 16 N -0.724 5.724 17 C -0.232 4.232 18 H 0.076 0.924 19 C -0.066 4.066 20 N -0.964 5.964 21 Si 0.962 3.038 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.277 1.277 25 C -0.106 4.106 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.043 4.043 29 C -0.217 4.217 30 H 0.245 0.755 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.408 0.592 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.373 0.627 41 H 0.248 0.752 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.032 0.968 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.131 0.869 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 -17.637 5.495 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.224 4.224 3 C -0.040 4.040 4 C -0.017 4.017 5 O -0.224 6.224 6 C 0.109 3.891 7 C -0.177 4.177 8 C -0.044 4.044 9 C -0.193 4.193 10 C 0.345 3.655 11 O -0.468 6.468 12 N -0.359 5.359 13 C -0.005 4.005 14 C 0.062 3.938 15 H 0.074 0.926 16 N -0.364 5.364 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.259 4.259 20 N -0.614 5.614 21 Si 0.793 3.207 22 H -0.211 1.211 23 H -0.229 1.229 24 H -0.203 1.203 25 C -0.128 4.128 26 C -0.198 4.198 27 C -0.192 4.192 28 C -0.062 4.062 29 C -0.235 4.235 30 H 0.261 0.739 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.245 0.755 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.149 0.851 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.948 -17.690 5.555 18.643 hybrid contribution -1.818 0.891 -0.613 2.115 sum 0.130 -16.799 4.942 17.511 Atomic orbital electron populations 1.25772 0.96947 0.98077 0.99704 1.23024 0.94753 1.02758 1.01914 1.18416 0.84446 0.95899 1.05222 1.22885 0.77254 0.98859 1.02728 1.85946 1.22178 1.30418 1.83893 1.19303 0.92525 0.84714 0.92548 1.20573 0.91282 0.99428 1.06387 1.21142 1.00780 0.90145 0.92306 1.19854 0.94187 0.94341 1.10895 1.18492 0.86519 0.84318 0.76205 1.90694 1.14745 1.86080 1.55240 1.45934 1.11113 1.09722 1.69129 1.21727 0.95335 0.82709 1.00706 1.20666 0.89684 0.92503 0.90964 0.92620 1.42517 1.10530 1.77115 1.06282 1.19486 0.89354 1.33484 0.94017 0.90646 1.25359 1.01594 1.03495 0.95403 1.69806 1.36589 1.55704 0.99340 0.85385 0.81112 0.78327 0.75918 1.21135 1.22894 1.20336 1.21605 0.97417 0.98151 0.95645 1.21842 0.98881 1.02160 0.96952 1.21696 0.99041 1.00728 0.97706 1.21251 0.93089 0.98022 0.93808 1.21364 1.01336 0.92728 1.08103 0.73893 0.87616 0.87299 0.90627 0.91192 0.82148 0.83761 0.75458 0.90036 0.92529 0.79480 0.94342 0.92753 0.91959 0.92214 0.92242 0.94852 0.92394 0.92847 0.85105 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 19.25 74.32 1.43 -1.13 16 2 C -0.22 -3.48 13.34 31.13 0.42 -3.06 16 3 C 0.00 -0.04 6.07 28.79 0.17 0.13 16 4 C 0.06 0.89 4.69 71.98 0.34 1.22 16 5 O -0.31 -5.95 10.12 -90.25 -0.91 -6.87 16 6 C 0.16 3.46 6.70 22.63 0.15 3.61 16 7 C -0.16 -3.45 9.97 22.32 0.22 -3.23 16 8 C -0.02 -0.65 9.58 22.50 0.22 -0.43 16 9 C -0.19 -5.71 5.87 -20.08 -0.12 -5.83 16 10 C 0.56 19.61 7.76 86.72 0.67 20.28 16 11 O -0.58 -23.48 16.34 -3.96 -0.06 -23.54 16 12 N -0.71 -24.43 5.34 -466.22 -2.49 -26.92 16 13 C 0.12 4.06 4.51 86.38 0.39 4.45 16 14 C 0.17 6.17 2.27 44.99 0.10 6.27 16 15 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 16 N -0.72 -32.96 3.80 -322.94 -1.23 -34.19 16 17 C -0.23 -11.75 9.93 84.03 0.83 -10.92 16 18 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 19 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 20 N -0.96 -56.01 13.06 21.65 0.28 -55.73 16 21 Si 0.96 44.04 29.55 68.60 2.03 46.07 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 C -0.11 -3.49 2.91 -10.79 -0.03 -3.52 16 26 C -0.14 -3.56 8.84 71.98 0.64 -2.92 16 27 C -0.13 -4.50 8.69 71.98 0.63 -3.88 16 28 C -0.04 -1.18 9.53 22.51 0.21 -0.96 16 29 C -0.22 -5.09 9.01 22.33 0.20 -4.89 16 30 H 0.24 1.61 7.80 -4.41 -0.03 1.58 16 31 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.09 7.65 -2.39 -0.02 1.07 16 34 H 0.07 1.11 7.65 -2.39 -0.02 1.09 16 35 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.14 3.62 7.64 -2.91 -0.02 3.60 16 37 H 0.41 14.13 6.16 -92.71 -0.57 13.55 16 38 H 0.08 2.54 6.71 -2.39 -0.02 2.52 16 39 H 0.06 2.08 6.18 -2.38 -0.01 2.07 16 40 H 0.37 18.93 7.80 -92.71 -0.72 18.21 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.44 6.54 -2.39 -0.02 1.43 16 46 H 0.03 1.33 7.60 -2.39 -0.02 1.31 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.05 1.70 6.32 -2.39 -0.02 1.68 16 49 H 0.13 3.64 6.39 -2.91 -0.02 3.63 16 50 H 0.15 2.93 6.28 -2.91 -0.02 2.91 16 Total: -1.00 -65.28 415.83 4.22 -61.06 By element: Atomic # 1 Polarization: 48.34 SS G_CDS: -0.34 Total: 48.01 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 6.94 Total: -7.89 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -3.43 Total: -116.84 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.98 Total: -30.41 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -65.28 4.22 -61.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667460057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.549 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds