Wall clock time and date at job start Wed Apr 1 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32990 * 120.00150 * 2 1 4 4 C 1.50700 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.47102 * 120.00008 * 180.02562 * 3 2 1 6 6 O 1.21620 * 119.99716 * 0.02562 * 5 3 2 7 7 N 1.34767 * 120.00322 * 179.97438 * 5 3 2 8 8 C 1.46493 * 120.00510 * 179.97438 * 7 5 3 9 9 H 1.09004 * 110.27299 * 32.91305 * 8 7 5 10 10 C 1.54599 * 110.31417 * 270.72189 * 8 7 5 11 11 C 1.54933 * 102.92175 * 219.12597 * 10 8 7 12 12 N 1.48531 * 103.23005 * 37.41097 * 11 10 8 13 13 C 1.46902 * 111.00140 * 200.28036 * 12 11 10 14 14 C 1.50703 * 109.46927 * 307.39844 * 13 12 11 15 15 C 1.38304 * 119.93015 * 269.72689 * 14 13 12 16 16 C 1.38101 * 120.06955 * 179.72631 * 15 14 13 17 17 C 1.38872 * 119.92805 * 0.56909 * 16 15 14 18 18 O 1.35755 * 120.06993 * 179.68343 * 17 16 15 19 19 C 1.34827 * 117.00585 * 174.48527 * 18 17 16 20 20 H 1.08007 * 119.99268 * 5.05865 * 19 18 17 21 21 C 1.38647 * 120.00193 * 185.05777 * 19 18 17 22 22 N 1.31554 * 120.00334 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47134 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47253 * 119.99888 * 23 21 19 26 26 H 1.48500 * 109.47204 * 239.99749 * 23 21 19 27 27 C 1.38875 * 119.86404 * 359.70351 * 17 16 15 28 28 C 1.38102 * 119.93408 * 0.02562 * 27 17 16 29 29 C 1.47901 * 105.81985 * 320.79108 * 12 11 10 30 30 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46586 * 299.99677 * 1 2 3 32 32 H 1.08994 * 109.47161 * 59.99422 * 1 2 3 33 33 H 1.08006 * 119.99324 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.46724 * 90.00368 * 4 3 2 35 35 H 1.08993 * 109.47287 * 330.00134 * 4 3 2 36 36 H 1.08999 * 109.46588 * 209.99920 * 4 3 2 37 37 H 0.97003 * 120.00083 * 0.02562 * 7 5 3 38 38 H 1.09003 * 110.72062 * 337.48407 * 10 8 7 39 39 H 1.09001 * 110.72537 * 100.76221 * 10 8 7 40 40 H 1.09007 * 110.66342 * 278.97475 * 11 10 8 41 41 H 1.09005 * 110.80949 * 155.91627 * 11 10 8 42 42 H 1.08995 * 109.46996 * 67.39424 * 13 12 11 43 43 H 1.08996 * 109.47494 * 187.39636 * 13 12 11 44 44 H 1.08011 * 119.96407 * 359.97438 * 15 14 13 45 45 H 1.07999 * 120.03229 * 180.27170 * 16 15 14 46 46 H 0.96998 * 120.00196 * 179.97438 * 22 21 19 47 47 H 1.08007 * 120.03368 * 180.02562 * 27 17 16 48 48 H 1.07994 * 119.96837 * 180.02562 * 28 27 17 49 49 H 1.08993 * 109.91755 * 265.97856 * 29 12 11 50 50 H 1.09004 * 109.91581 * 144.67848 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0015 7 7 4.3170 2.3187 -0.0011 8 6 5.7819 2.3188 -0.0011 9 1 6.1596 1.4601 -0.5563 10 6 6.3186 2.3011 1.4486 11 6 7.5375 3.2550 1.3784 12 7 7.0833 4.3190 0.4469 13 6 8.2272 5.0453 -0.1207 14 6 9.1185 5.5286 0.9943 15 6 8.9077 6.7751 1.5553 16 6 9.7192 7.2185 2.5809 17 6 10.7552 6.4163 3.0409 18 8 11.5588 6.8520 4.0446 19 6 12.4710 5.9808 4.5206 20 1 12.5933 5.0163 4.0501 21 6 13.2520 6.3229 5.6139 22 7 13.1033 7.4979 6.1866 23 14 14.5163 5.1160 6.2729 24 1 14.4874 3.8748 5.4582 25 1 15.8684 5.7258 6.1989 26 1 14.1980 4.7877 7.6857 27 6 10.9679 5.1675 2.4717 28 6 10.1495 4.7274 1.4501 29 6 6.3165 3.6274 -0.6120 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.0470 -0.9354 -0.0004 34 1 1.2374 2.7712 1.0284 35 1 0.4660 2.3266 -0.5128 36 1 2.0075 3.2165 -0.5133 37 1 3.8320 3.1589 -0.0007 38 1 5.5693 2.6832 2.1420 39 1 6.6311 1.2961 1.7321 40 1 8.4084 2.7373 0.9761 41 1 7.7595 3.6726 2.3606 42 1 8.7914 4.3805 -0.7746 43 1 7.8670 5.8994 -0.6941 44 1 8.1049 7.4007 1.1935 45 1 9.5512 8.1901 3.0215 46 1 13.6494 7.7371 6.9517 47 1 11.7727 4.5412 2.8276 48 1 10.3141 3.7562 1.0074 49 1 6.9682 3.4039 -1.4566 50 1 5.4846 4.2526 -0.9365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690087705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:44 Heat of formation + Delta-G solvation = -19.454588 kcal Electronic energy + Delta-G solvation = -28908.941895 eV Core-core repulsion = 24901.988890 eV Total energy + Delta-G solvation = -4006.953005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.41191 -39.34090 -38.50877 -36.60575 -35.85152 -34.60601 -32.41825 -31.65226 -30.22821 -29.80738 -29.25557 -27.89907 -26.53862 -25.60313 -24.48280 -22.48068 -22.02889 -21.32543 -20.77571 -20.21014 -18.92077 -17.98719 -17.38693 -16.92639 -16.77314 -15.87478 -15.43599 -15.25063 -14.74776 -14.69764 -14.54576 -14.05835 -13.92405 -13.91656 -13.84119 -13.57824 -13.38531 -13.07141 -12.93685 -12.78137 -12.67446 -12.59545 -12.48135 -12.09450 -11.92520 -11.82490 -11.68907 -11.59220 -11.32001 -11.22329 -11.00355 -10.75866 -10.61816 -10.52019 -10.42590 -10.10930 -9.49926 -9.33933 -9.23065 -8.85504 -8.41850 -8.18062 -7.18894 -6.46437 -4.05241 1.02703 2.21236 2.25813 2.91418 3.01017 3.11176 3.13113 3.18467 3.95376 4.02381 4.30138 4.43136 4.49255 4.63575 4.66102 4.75024 4.83034 4.95008 5.04586 5.08532 5.19138 5.19546 5.21031 5.26735 5.27926 5.35572 5.39564 5.41235 5.50299 5.51733 5.58126 5.74307 5.78839 5.82330 5.89605 6.00255 6.02949 6.11640 6.13252 6.20393 6.32395 6.41267 6.69114 6.83141 6.88478 7.02267 7.07282 7.25375 7.27903 7.37645 7.43278 7.81503 7.98401 7.98695 8.99397 9.69468 10.71599 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.001791 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.343077 B =15632.395978 C =16219.427502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.193 4.193 4 C -0.118 4.118 5 C 0.553 3.447 6 O -0.546 6.546 7 N -0.715 5.715 8 C 0.135 3.865 9 H 0.094 0.906 10 C -0.134 4.134 11 C 0.042 3.958 12 N -0.509 5.509 13 C 0.105 3.895 14 C -0.186 4.186 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.234 4.234 28 C -0.064 4.064 29 C 0.028 3.972 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.402 0.598 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.102 0.898 49 H 0.054 0.946 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.080 -10.318 -14.137 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.196 4.196 4 C -0.175 4.175 5 C 0.342 3.658 6 O -0.425 6.425 7 N -0.367 5.367 8 C 0.030 3.970 9 H 0.112 0.888 10 C -0.173 4.173 11 C -0.086 4.086 12 N -0.233 5.233 13 C -0.022 4.022 14 C -0.187 4.187 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.254 4.254 28 C -0.083 4.083 29 C -0.101 4.101 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.239 0.761 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.120 0.880 49 H 0.072 0.928 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.815 -10.305 -13.573 27.682 hybrid contribution 1.078 -0.783 -0.060 1.333 sum -20.737 -11.087 -13.633 27.181 Atomic orbital electron populations 1.20998 0.92072 1.03114 1.02622 1.23587 0.96295 0.97963 0.91575 1.21432 0.92656 0.96879 1.08602 1.20830 1.00081 0.93910 1.02684 1.18422 0.87780 0.83717 0.75888 1.90788 1.70138 1.31291 1.50310 1.46048 1.06889 1.08721 1.75067 1.21860 0.79519 0.98441 0.97196 0.88782 1.22945 0.98227 0.99997 0.96141 1.23205 0.95518 0.91188 0.98682 1.64961 1.21715 1.23033 1.13610 1.20992 0.89489 0.97449 0.94293 1.19051 1.00126 0.96692 1.02849 1.20459 0.97144 0.94858 0.94647 1.20218 0.97893 1.01301 1.01991 1.19404 0.89733 0.91889 0.88733 1.83979 1.41623 1.39434 1.43079 1.21371 1.13947 0.98095 1.13356 0.89032 1.25286 0.98378 0.97294 0.95551 1.70045 1.38742 1.19686 1.21206 0.85654 0.79457 0.79383 0.78977 1.19117 1.20134 1.20125 1.21119 1.04196 0.98374 1.01662 1.20604 0.94315 0.97615 0.95731 1.23145 0.98884 0.93686 0.94367 0.91380 0.90673 0.90620 0.85637 0.90781 0.90882 0.91736 0.76132 0.90363 0.90648 0.93480 0.89083 0.94702 0.90614 0.87023 0.86569 0.92060 0.85647 0.87982 0.92765 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.56 8.91 36.01 0.32 -0.24 16 2 C -0.07 -0.54 9.84 -36.13 -0.36 -0.90 16 3 C -0.19 -1.53 6.00 -102.85 -0.62 -2.15 16 4 C -0.12 -0.59 9.14 36.01 0.33 -0.26 16 5 C 0.55 6.01 7.75 -12.67 -0.10 5.91 16 6 O -0.55 -8.01 15.87 5.26 0.08 -7.93 16 7 N -0.72 -6.50 5.00 -53.67 -0.27 -6.77 16 8 C 0.14 1.39 3.34 -66.57 -0.22 1.17 16 9 H 0.09 1.08 7.56 -51.93 -0.39 0.69 16 10 C -0.13 -1.53 6.78 -24.87 -0.17 -1.70 16 11 C 0.04 0.54 4.97 -1.90 -0.01 0.53 16 12 N -0.51 -6.21 5.39 -231.89 -1.25 -7.46 16 13 C 0.10 1.36 5.19 -4.97 -0.03 1.34 16 14 C -0.19 -3.06 4.60 -104.57 -0.48 -3.54 16 15 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 16 C -0.19 -4.07 9.99 -39.40 -0.39 -4.47 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 19 C -0.39 -10.91 9.49 30.88 0.29 -10.62 16 20 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.23 13.67 55.48 0.76 -24.48 16 23 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.23 -5.01 9.17 -39.40 -0.36 -5.37 16 28 C -0.06 -1.14 8.33 -39.61 -0.33 -1.47 16 29 C 0.03 0.27 6.47 -2.75 -0.02 0.25 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 32 H 0.08 0.26 7.40 -51.93 -0.38 -0.13 16 33 H 0.13 1.07 7.49 -52.48 -0.39 0.68 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.27 6.49 -51.93 -0.34 -0.06 16 36 H 0.06 0.27 6.70 -51.93 -0.35 -0.08 16 37 H 0.40 2.77 6.45 -40.82 -0.26 2.51 16 38 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.60 7.09 -51.92 -0.37 0.23 16 41 H 0.09 1.36 7.72 -51.93 -0.40 0.96 16 42 H 0.03 0.43 7.75 -51.93 -0.40 0.03 16 43 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 44 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.13 2.72 5.64 -52.48 -0.30 2.42 16 48 H 0.10 1.58 7.38 -52.49 -0.39 1.20 16 49 H 0.05 0.50 7.57 -51.93 -0.39 0.11 16 50 H 0.08 0.68 7.65 -51.93 -0.40 0.29 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -32.55 403.53 -10.04 -42.58 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.54 Total: 5.88 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.88 Total: -18.36 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.76 Total: -38.70 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.55 -10.04 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690087705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.130 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds