Wall clock time and date at job start Wed Apr 1 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32991 * 120.00159 * 2 1 4 4 C 1.50696 * 120.00245 * 180.02562 * 3 2 1 5 5 C 1.47103 * 119.99870 * 359.97438 * 3 2 1 6 6 O 1.21612 * 119.99837 * 0.02562 * 5 3 2 7 7 N 1.34776 * 119.99914 * 180.02562 * 5 3 2 8 8 C 1.46492 * 119.99953 * 180.02562 * 7 5 3 9 9 H 1.09002 * 112.91198 * 336.24996 * 8 7 5 10 10 C 1.53782 * 113.61550 * 107.50487 * 8 7 5 11 11 C 1.53781 * 87.08416 * 139.98199 * 10 8 7 12 12 H 1.08994 * 113.61752 * 89.11377 * 11 10 8 13 13 N 1.46897 * 113.68943 * 220.00828 * 11 10 8 14 14 C 1.46902 * 110.99977 * 252.53471 * 13 11 10 15 15 C 1.50700 * 109.47278 * 179.97438 * 14 13 11 16 16 C 1.38299 * 119.93069 * 269.72843 * 15 14 13 17 17 C 1.38107 * 120.06755 * 179.72558 * 16 15 14 18 18 C 1.38876 * 119.92573 * 0.54432 * 17 16 15 19 19 O 1.35759 * 120.06589 * 179.75286 * 18 17 16 20 20 C 1.34826 * 116.99788 * 174.44350 * 19 18 17 21 21 H 1.07994 * 120.00483 * 5.04994 * 20 19 18 22 22 C 1.38664 * 119.99407 * 185.05217 * 20 19 18 23 23 N 1.31548 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99597 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47050 * 90.00069 * 24 22 20 26 26 H 1.48497 * 109.47006 * 210.00069 * 24 22 20 27 27 H 1.48503 * 109.47214 * 329.99975 * 24 22 20 28 28 C 1.38878 * 119.86645 * 359.72447 * 18 17 16 29 29 C 1.38092 * 119.93166 * 0.02562 * 28 18 17 30 30 C 1.53779 * 87.08022 * 334.56529 * 11 10 8 31 31 H 1.08995 * 109.46660 * 300.00051 * 1 2 3 32 32 H 1.08997 * 109.46658 * 60.00197 * 1 2 3 33 33 H 1.09004 * 109.47058 * 180.02562 * 1 2 3 34 34 H 1.08004 * 119.99946 * 179.97438 * 2 1 3 35 35 H 1.09003 * 109.47008 * 270.00137 * 4 3 2 36 36 H 1.09009 * 109.47302 * 29.99262 * 4 3 2 37 37 H 1.08996 * 109.47501 * 149.99393 * 4 3 2 38 38 H 0.97003 * 120.00185 * 359.97438 * 7 5 3 39 39 H 1.08995 * 113.61541 * 25.42465 * 10 8 7 40 40 H 1.09010 * 113.68788 * 254.53479 * 10 8 7 41 41 H 1.00906 * 111.00012 * 16.48206 * 13 11 10 42 42 H 1.09001 * 109.46800 * 300.00038 * 14 13 11 43 43 H 1.09001 * 109.47522 * 60.00079 * 14 13 11 44 44 H 1.08001 * 119.96514 * 359.97438 * 16 15 14 45 45 H 1.07991 * 120.03334 * 180.26908 * 17 16 15 46 46 H 0.97006 * 120.00158 * 179.97438 * 23 22 20 47 47 H 1.08004 * 120.03405 * 180.02562 * 28 18 17 48 48 H 1.07996 * 119.96855 * 180.02562 * 29 28 18 49 49 H 1.08999 * 113.61345 * 139.98312 * 30 11 10 50 50 H 1.09002 * 113.61720 * 270.89083 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2204 2.4256 -0.0006 7 7 2.1104 3.5929 -0.0011 8 6 1.3780 4.8615 -0.0011 9 1 0.3698 4.7695 -0.4050 10 6 1.4375 5.6072 1.3425 11 6 1.5883 6.9025 0.5274 12 1 0.6377 7.3683 0.2679 13 7 2.5511 7.8522 1.1010 14 6 1.8624 9.0053 1.6960 15 6 2.8800 9.9551 2.2734 16 6 3.2838 9.8175 3.5890 17 6 4.2204 10.6828 4.1194 18 6 4.7483 11.6989 3.3336 19 8 5.6654 12.5542 3.8536 20 6 6.2220 13.4436 3.0069 21 1 5.8748 13.5081 1.9863 22 6 7.2405 14.2756 3.4465 23 7 7.6632 14.1974 4.6898 24 14 8.0123 15.5074 2.2733 25 1 7.2696 16.7913 2.3447 26 1 9.4295 15.7335 2.6548 27 1 7.9512 14.9766 0.8877 28 6 4.3366 11.8379 2.0145 29 6 3.4036 10.9663 1.4884 30 6 2.1757 6.0335 -0.5971 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.0471 -0.9353 0.0004 35 1 4.0427 1.1515 1.0270 36 1 4.0422 0.2617 -0.5147 37 1 4.0422 2.0417 -0.5144 38 1 3.0805 3.5929 -0.0007 39 1 2.3160 5.3621 1.9394 40 1 0.5102 5.5561 1.9133 41 1 3.1471 7.3987 1.7773 42 1 1.2815 9.5171 0.9286 43 1 1.1962 8.6621 2.4874 44 1 2.8693 9.0300 4.2009 45 1 4.5386 10.5722 5.1454 46 1 8.3760 14.7792 4.9973 47 1 4.7457 12.6269 1.4008 48 1 3.0833 11.0736 0.4626 49 1 1.8438 6.3257 -1.5934 50 1 3.2561 5.9048 -0.5305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690331784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:19 Heat of formation + Delta-G solvation = -5.878759 kcal Electronic energy + Delta-G solvation = -28159.585321 eV Core-core repulsion = 24153.221008 eV Total energy + Delta-G solvation = -4006.364313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.59836 -39.23980 -38.84832 -36.83099 -35.35326 -34.78447 -33.13047 -32.20673 -30.31902 -30.16757 -29.12844 -25.94304 -25.82535 -25.45246 -24.64150 -23.56523 -21.97899 -21.72215 -20.71140 -20.25691 -19.23105 -17.98260 -16.95403 -16.90991 -16.49724 -15.93259 -15.49013 -15.10917 -14.72430 -14.63434 -14.53727 -14.26730 -14.21227 -13.74477 -13.62655 -13.50540 -13.34904 -13.13765 -12.99361 -12.96818 -12.71438 -12.67699 -12.51777 -12.34139 -11.92113 -11.86190 -11.61672 -11.48985 -11.37377 -11.19499 -11.00753 -10.76618 -10.63869 -10.46498 -10.42709 -9.83522 -9.56470 -9.33251 -9.18059 -8.83966 -8.33142 -8.16861 -7.18919 -6.45630 -4.04385 1.01168 2.21763 2.28444 2.90270 2.93106 3.12393 3.13547 3.18345 3.96352 4.13454 4.25709 4.38263 4.41967 4.44981 4.61964 4.64497 4.78948 4.79794 4.96345 5.09245 5.12892 5.25204 5.27501 5.29202 5.36634 5.44024 5.45978 5.46869 5.50861 5.51766 5.68553 5.72751 5.74079 5.75615 5.82185 5.88606 5.91024 6.05693 6.16864 6.21117 6.29930 6.43093 6.69870 6.90660 7.01329 7.11799 7.20430 7.23699 7.38597 7.43028 7.47108 7.82844 7.93769 7.99562 9.00158 9.70203 10.72365 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.001506 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.536591 B =18585.375860 C =18901.049745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.115 4.115 5 C 0.550 3.450 6 O -0.540 6.540 7 N -0.715 5.715 8 C 0.122 3.878 9 H 0.114 0.886 10 C -0.180 4.180 11 C 0.071 3.929 12 H 0.098 0.902 13 N -0.671 5.671 14 C 0.118 3.882 15 C -0.187 4.187 16 C -0.069 4.069 17 C -0.194 4.194 18 C 0.156 3.844 19 O -0.179 6.179 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.235 4.235 29 C -0.049 4.049 30 C -0.134 4.134 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.344 0.656 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 -24.436 -10.301 28.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.203 4.203 4 C -0.172 4.172 5 C 0.340 3.660 6 O -0.419 6.419 7 N -0.366 5.366 8 C 0.017 3.983 9 H 0.132 0.868 10 C -0.221 4.221 11 C -0.041 4.041 12 H 0.116 0.884 13 N -0.301 5.301 14 C -0.010 4.010 15 C -0.188 4.188 16 C -0.088 4.088 17 C -0.213 4.213 18 C 0.102 3.898 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.255 4.255 29 C -0.067 4.067 30 C -0.173 4.173 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.237 0.763 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.080 0.920 47 H 0.144 0.856 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.202 -23.927 -10.521 28.438 hybrid contribution 0.670 0.239 0.249 0.754 sum -10.532 -23.689 -10.272 27.886 Atomic orbital electron populations 1.21034 0.91698 1.00991 1.04161 1.23656 0.97297 0.96697 0.91154 1.21489 0.96445 0.93218 1.09168 1.20773 0.90843 1.02983 1.02597 1.18460 0.87297 0.84227 0.76051 1.90779 1.13604 1.87605 1.49897 1.45953 1.10213 1.05400 1.75069 1.22389 0.97554 0.81276 0.97116 0.86807 1.24212 1.02833 0.97499 0.97511 1.22791 0.95801 0.90103 0.95400 0.88371 1.60513 1.20872 1.08996 1.39717 1.20663 0.93726 0.90099 0.96539 1.19123 1.04656 1.00450 0.94563 1.20480 0.96218 0.97668 0.94396 1.20167 1.03066 0.97780 1.00324 1.19401 0.89518 0.89321 0.91586 1.83976 1.47238 1.40183 1.36780 1.21335 1.17453 1.13870 0.94153 0.89037 1.25288 0.96013 0.98208 0.96981 1.70036 1.27042 1.37558 1.15129 0.85716 0.78463 0.79821 0.79462 1.19883 1.20258 1.19171 1.21170 1.03786 1.03988 0.96524 1.20573 0.94837 0.93462 0.97869 1.23477 1.00831 0.93891 0.99122 0.90106 0.90088 0.93010 0.85847 0.90997 0.91114 0.91687 0.76320 0.89562 0.91175 0.83681 0.91140 0.95305 0.87533 0.86654 0.92033 0.85609 0.87486 0.90670 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 8.45 36.01 0.30 -0.64 16 2 C -0.07 -0.46 9.95 -36.13 -0.36 -0.82 16 3 C -0.20 -1.46 6.00 -102.85 -0.62 -2.08 16 4 C -0.12 -0.54 9.61 36.00 0.35 -0.19 16 5 C 0.55 5.32 7.72 -12.66 -0.10 5.22 16 6 O -0.54 -6.80 12.67 5.27 0.07 -6.74 16 7 N -0.72 -5.63 5.30 -54.20 -0.29 -5.92 16 8 C 0.12 1.02 4.24 -67.12 -0.28 0.74 16 9 H 0.11 1.09 7.47 -51.93 -0.39 0.71 16 10 C -0.18 -1.54 7.50 -25.92 -0.19 -1.73 16 11 C 0.07 0.64 4.18 -66.90 -0.28 0.36 16 12 H 0.10 0.87 7.86 -51.93 -0.41 0.46 16 13 N -0.67 -7.67 6.61 -107.13 -0.71 -8.38 16 14 C 0.12 1.51 5.65 -4.97 -0.03 1.48 16 15 C -0.19 -3.08 5.40 -104.57 -0.56 -3.64 16 16 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 17 C -0.19 -4.05 9.99 -39.39 -0.39 -4.45 16 18 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 19 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16 20 C -0.39 -10.94 9.49 30.89 0.29 -10.64 16 21 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 24 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.24 -5.09 9.17 -39.40 -0.36 -5.46 16 29 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 30 C -0.13 -1.08 7.63 -25.92 -0.20 -1.28 16 31 H 0.08 0.75 7.22 -51.93 -0.37 0.38 16 32 H 0.08 0.74 7.22 -51.93 -0.37 0.36 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.12 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.26 8.07 -51.92 -0.42 -0.16 16 37 H 0.06 0.26 6.70 -51.93 -0.35 -0.09 16 38 H 0.40 2.36 6.83 -40.82 -0.28 2.08 16 39 H 0.09 0.73 7.83 -51.93 -0.41 0.33 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.34 3.93 8.19 -39.29 -0.32 3.61 16 42 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 45 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 48 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -32.00 410.99 -10.22 -42.22 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.67 Total: 8.26 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -3.56 Total: -21.50 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.24 Total: -38.77 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.00 -10.22 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690331784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.341 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds