Wall clock time and date at job start Wed Apr 1 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46913 * 2 1 4 4 H 1.08994 * 110.46114 * 308.81130 * 3 2 1 5 5 C 1.54378 * 110.40549 * 186.39459 * 3 2 1 6 6 H 1.08995 * 110.41519 * 336.31051 * 5 3 2 7 7 N 1.46499 * 110.32279 * 98.47789 * 5 3 2 8 8 C 1.34780 * 119.99851 * 202.08966 * 7 5 3 9 9 O 1.21278 * 119.99879 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99922 * 180.02562 * 8 7 5 11 11 S 1.80998 * 109.47076 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99843 * 179.97438 * 11 10 8 13 13 H 1.07991 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.38808 * 119.99796 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99864 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46974 * 90.00203 * 16 14 12 18 18 H 1.48495 * 109.47140 * 210.00102 * 16 14 12 19 19 H 1.48503 * 109.47020 * 330.00248 * 16 14 12 20 20 C 1.54268 * 105.05848 * 217.36771 * 5 3 2 21 21 C 1.54381 * 105.05969 * 0.02562 * 20 5 3 22 22 N 1.48563 * 110.40745 * 71.22364 * 3 2 1 23 23 C 1.46895 * 110.99886 * 277.81255 * 22 3 2 24 24 C 1.52996 * 109.47390 * 319.27344 * 23 22 3 25 25 C 1.53003 * 109.47142 * 186.16579 * 24 23 22 26 26 C 1.52996 * 109.47142 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.47418 * 305.00359 * 26 25 24 28 28 C 1.53002 * 109.47323 * 184.99698 * 26 25 24 29 29 O 1.42903 * 109.46992 * 65.00083 * 26 25 24 30 30 H 1.08993 * 109.46820 * 169.54237 * 1 2 3 31 31 H 1.08996 * 109.46921 * 289.54253 * 1 2 3 32 32 H 1.09001 * 109.46870 * 49.54117 * 1 2 3 33 33 H 1.08994 * 109.46835 * 240.00303 * 2 1 3 34 34 H 1.08999 * 109.46838 * 119.99881 * 2 1 3 35 35 H 0.97001 * 120.00283 * 22.08294 * 7 5 3 36 36 H 1.09009 * 109.46775 * 299.99729 * 10 8 7 37 37 H 1.08997 * 109.47201 * 59.99129 * 10 8 7 38 38 H 0.96998 * 120.00078 * 179.97438 * 15 14 12 39 39 H 1.09005 * 110.31791 * 118.89679 * 20 5 3 40 40 H 1.08992 * 110.32641 * 241.00162 * 20 5 3 41 41 H 1.09003 * 110.40917 * 142.62531 * 21 20 5 42 42 H 1.08999 * 110.41253 * 264.95424 * 21 20 5 43 43 H 1.08999 * 109.47212 * 79.27900 * 23 22 3 44 44 H 1.09004 * 109.46718 * 199.27196 * 23 22 3 45 45 H 1.08998 * 109.47335 * 306.16470 * 24 23 22 46 46 H 1.08999 * 109.47213 * 66.16301 * 24 23 22 47 47 H 1.08998 * 109.46917 * 300.00147 * 25 24 23 48 48 H 1.08993 * 109.47249 * 60.00236 * 25 24 23 49 49 H 1.09002 * 109.46633 * 60.00241 * 28 26 25 50 50 H 1.08997 * 109.46953 * 179.97438 * 28 26 25 51 51 H 1.08994 * 109.46858 * 300.00290 * 28 26 25 52 52 H 0.96693 * 114.00272 * 59.99834 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5636 2.0151 -0.7957 5 6 3.5751 1.4708 -0.1611 6 1 4.0097 0.5279 0.1707 7 7 3.9355 1.7329 -1.5567 8 6 5.1490 1.3715 -2.0186 9 8 5.9427 0.8298 -1.2788 10 6 5.5199 1.6416 -3.4541 11 16 7.2003 1.0455 -3.7654 12 6 7.3675 1.4760 -5.4658 13 1 6.5529 1.9614 -5.9826 14 6 8.5467 1.1923 -6.1409 15 7 9.5402 0.6020 -5.5106 16 14 8.7243 1.6493 -7.9434 17 1 9.2826 3.0210 -8.0535 18 1 9.6385 0.6877 -8.6101 19 1 7.3928 1.6027 -8.5993 20 6 4.0517 2.6275 0.7415 21 6 2.7645 3.2003 1.3726 22 7 1.7902 2.0803 1.3183 23 6 0.4109 2.5773 1.4096 24 6 0.0106 3.2186 0.0794 25 6 -1.3659 3.8712 0.2216 26 6 -1.7658 4.5130 -1.1084 27 1 -0.9869 5.2061 -1.4262 28 6 -3.0830 5.2715 -0.9330 29 8 -1.9304 3.4953 -2.0979 30 1 -0.3633 -1.0105 -0.1865 31 1 -0.3633 0.3438 0.9684 32 1 -0.3633 0.6669 -0.7819 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.3008 2.1664 -2.1484 36 1 4.8225 1.1243 -4.1131 37 1 5.4736 2.7136 -3.6458 38 1 10.3641 0.4034 -5.9824 39 1 4.7187 2.2519 1.5176 40 1 4.5553 3.3893 0.1465 41 1 2.9468 3.4963 2.4057 42 1 2.4022 4.0494 0.7929 43 1 -0.2606 1.7473 1.6295 44 1 0.3440 3.3193 2.2054 45 1 0.7452 3.9758 -0.1945 46 1 -0.0285 2.4532 -0.6957 47 1 -2.1005 3.1140 0.4955 48 1 -1.3268 4.6366 0.9966 49 1 -2.9574 6.0478 -0.1782 50 1 -3.3676 5.7291 -1.8805 51 1 -3.8618 4.5784 -0.6153 52 1 -2.6093 2.8418 -1.8809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691459861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:37 Heat of formation + Delta-G solvation = -95.089223 kcal Electronic energy + Delta-G solvation = -28706.471895 eV Core-core repulsion = 24831.683077 eV Total energy + Delta-G solvation = -3874.788817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52090 -38.83986 -38.14345 -35.03521 -33.53846 -33.33675 -32.41134 -31.59251 -29.91530 -28.85908 -27.61893 -25.67351 -25.38482 -23.45527 -22.52868 -21.93421 -21.39790 -20.20473 -19.45030 -17.81698 -17.18799 -16.64435 -16.45315 -16.20831 -15.70795 -15.60193 -14.83121 -14.81246 -14.77541 -14.49451 -14.35898 -13.91814 -13.62811 -13.43235 -13.23645 -13.03761 -13.00280 -12.78051 -12.56497 -12.39004 -12.35482 -12.12114 -12.01049 -11.75477 -11.59161 -11.34925 -11.31715 -11.18645 -11.05032 -11.00741 -10.95177 -10.73805 -10.62677 -10.46499 -10.31988 -9.79633 -9.36441 -9.05368 -8.84652 -8.63715 -8.21514 -6.47947 -6.20049 -3.90314 3.02616 3.11996 3.23534 3.28573 3.32527 3.61034 3.87248 3.94325 4.17905 4.22088 4.33427 4.43737 4.50675 4.57876 4.72158 4.85697 4.91909 4.92698 4.96697 5.03389 5.09324 5.11876 5.15067 5.19240 5.25060 5.29720 5.33949 5.37685 5.46921 5.49166 5.55453 5.61883 5.65793 5.70151 5.74508 5.78308 5.80808 5.91105 5.93209 6.01069 6.06681 6.10319 6.16520 6.24301 6.48160 6.75996 6.81702 7.21150 7.61288 7.73777 8.36950 8.65155 9.25271 10.87350 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.002279 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.511769 B =12284.336798 C =13545.819240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C 0.049 3.951 4 H 0.072 0.928 5 C 0.147 3.853 6 H 0.098 0.902 7 N -0.733 5.733 8 C 0.533 3.467 9 O -0.515 6.515 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.136 4.136 21 C 0.030 3.970 22 N -0.499 5.499 23 C 0.037 3.963 24 C -0.161 4.161 25 C -0.146 4.146 26 C 0.099 3.901 27 H 0.096 0.904 28 C -0.186 4.186 29 O -0.561 6.561 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.057 0.943 52 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.987 7.040 14.250 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.060 4.060 4 H 0.090 0.910 5 C 0.041 3.959 6 H 0.116 0.884 7 N -0.387 5.387 8 C 0.319 3.681 9 O -0.389 6.389 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.175 4.175 21 C -0.098 4.098 22 N -0.222 5.222 23 C -0.091 4.091 24 C -0.199 4.199 25 C -0.185 4.185 26 C 0.040 3.960 27 H 0.114 0.886 28 C -0.244 4.244 29 O -0.366 6.366 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -24.915 6.009 15.650 30.029 hybrid contribution -1.718 1.613 -2.599 3.509 sum -26.633 7.622 13.051 30.622 Atomic orbital electron populations 1.22052 0.96030 1.01530 1.01909 1.21461 0.95743 0.94692 1.02814 1.23107 0.94522 0.96636 0.91713 0.91021 1.21599 0.93233 0.99530 0.81525 0.88376 1.46133 1.17063 1.63910 1.11617 1.20296 0.80906 0.77375 0.89477 1.90701 1.49122 1.40721 1.58340 1.23537 1.07132 1.05071 0.94683 1.85390 1.06321 1.78372 1.13218 1.22869 1.03694 1.45898 0.95866 0.90960 1.24995 0.94806 0.94693 0.99123 1.70019 1.04567 1.38969 1.36734 0.86171 0.78206 0.78364 0.82777 1.20293 1.20755 1.19695 1.22762 0.96997 0.98267 0.99496 1.23148 0.92468 0.92995 1.01161 1.65561 1.03108 1.23725 1.29814 1.22559 0.90494 0.99544 0.96537 1.22355 0.96640 1.01000 0.99905 1.22242 0.97687 1.00571 0.97957 1.21949 0.96908 0.89225 0.87875 0.88575 1.22513 0.98002 1.01214 1.02647 1.86625 1.62007 1.41104 1.46892 0.92915 0.91965 0.92659 0.91307 0.90819 0.77039 0.89256 0.89333 0.92202 0.90292 0.90640 0.90081 0.93643 0.89621 0.91164 0.91933 0.89815 0.91526 0.91141 0.91622 0.91796 0.92345 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.72 37.16 0.32 -0.85 16 2 C -0.11 -1.02 5.52 -26.72 -0.15 -1.17 16 3 C 0.05 0.47 1.88 -66.07 -0.12 0.34 16 4 H 0.07 0.66 4.81 -51.93 -0.25 0.41 16 5 C 0.15 1.82 2.91 -66.55 -0.19 1.63 16 6 H 0.10 1.45 7.36 -51.93 -0.38 1.07 16 7 N -0.73 -9.97 5.04 -52.47 -0.26 -10.24 16 8 C 0.53 9.99 7.84 -10.98 -0.09 9.91 16 9 O -0.52 -11.72 15.56 5.56 0.09 -11.63 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 16 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.14 -1.58 6.78 -25.34 -0.17 -1.75 16 21 C 0.03 0.28 6.30 -2.19 -0.01 0.26 16 22 N -0.50 -4.45 5.33 -222.15 -1.18 -5.63 16 23 C 0.04 0.25 4.82 -3.83 -0.02 0.23 16 24 C -0.16 -1.03 3.68 -26.73 -0.10 -1.13 16 25 C -0.15 -0.72 4.89 -26.73 -0.13 -0.85 16 26 C 0.10 0.58 3.59 -26.73 -0.10 0.48 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 C -0.19 -0.86 9.53 37.16 0.35 -0.50 16 29 O -0.56 -4.05 12.88 -35.23 -0.45 -4.50 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 5.31 -51.93 -0.28 0.15 16 32 H 0.05 0.39 6.25 -51.93 -0.32 0.07 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.39 8.34 -40.82 -0.34 4.05 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.39 6.50 -51.93 -0.34 0.05 16 43 H 0.09 0.56 5.31 -51.93 -0.28 0.29 16 44 H 0.07 0.45 8.02 -51.93 -0.42 0.04 16 45 H 0.06 0.47 6.62 -51.93 -0.34 0.13 16 46 H 0.08 0.62 3.90 -51.93 -0.20 0.42 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 52 H 0.37 1.44 9.04 45.56 0.41 1.85 16 LS Contribution 412.46 15.07 6.22 6.22 Total: -1.00 -34.42 412.46 -10.27 -44.69 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.19 Total: 3.35 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.02 Total: -9.36 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.71 Total: -41.46 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.37 Total: -16.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.42 -10.27 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691459861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.399 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds