Wall clock time and date at job start Wed Apr 1 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47064 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99684 * 2 1 3 5 5 C 1.50699 * 109.46682 * 120.00055 * 2 1 3 6 6 O 1.20779 * 120.00802 * 359.97438 * 5 2 1 7 7 C 1.49097 * 119.99627 * 180.02562 * 5 2 1 8 8 O 1.21362 * 120.00016 * 359.97438 * 7 5 2 9 9 N 1.34774 * 119.99838 * 179.97438 * 7 5 2 10 10 C 1.46502 * 120.00117 * 179.97438 * 9 7 5 11 11 H 1.09003 * 110.77736 * 36.78594 * 10 9 7 12 12 C 1.54322 * 110.71789 * 273.54929 * 10 9 7 13 13 N 1.47022 * 107.26798 * 219.43969 * 12 10 9 14 14 C 1.36945 * 125.64832 * 178.90459 * 13 12 10 15 15 H 1.07997 * 119.99756 * 180.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 0.02562 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47423 * 108.70390 * 359.17152 * 13 12 10 23 23 C 1.54690 * 104.94273 * 23.80445 * 22 13 12 24 24 H 1.09007 * 110.81075 * 81.32472 * 23 22 13 25 25 C 1.50696 * 111.13704 * 205.09296 * 23 22 13 26 26 C 1.38233 * 119.99895 * 52.11861 * 25 23 22 27 27 C 1.38236 * 120.00059 * 179.78443 * 26 25 23 28 28 C 1.38233 * 119.99854 * 0.46325 * 27 26 25 29 29 C 1.38239 * 120.00014 * 359.76849 * 28 27 26 30 30 C 1.38231 * 119.99753 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.47576 * 300.00263 * 1 2 3 32 32 H 1.09003 * 109.47272 * 60.00400 * 1 2 3 33 33 H 1.09005 * 109.47217 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47220 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47479 * 299.99802 * 3 2 1 36 36 H 1.08997 * 109.46958 * 59.99961 * 3 2 1 37 37 H 1.08997 * 109.47725 * 300.00184 * 4 2 1 38 38 H 1.09007 * 109.47218 * 60.00310 * 4 2 1 39 39 H 1.08998 * 109.47392 * 179.97438 * 4 2 1 40 40 H 0.97002 * 120.00109 * 0.02562 * 9 7 5 41 41 H 1.09001 * 109.88407 * 100.02445 * 12 10 9 42 42 H 1.08998 * 109.88756 * 338.85427 * 12 10 9 43 43 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 44 44 H 1.09005 * 110.36971 * 142.74146 * 22 13 12 45 45 H 1.09009 * 110.36703 * 265.05695 * 22 13 12 46 46 H 1.07999 * 119.99981 * 359.97438 * 26 25 23 47 47 H 1.07994 * 120.00241 * 180.24799 * 27 26 25 48 48 H 1.07996 * 120.00209 * 179.78493 * 28 27 26 49 49 H 1.07996 * 120.00118 * 180.02562 * 29 28 27 50 50 H 1.08005 * 120.00000 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 8 1.2474 -1.1691 2.0258 7 6 3.4981 -0.8462 1.4667 8 8 4.2867 -0.3849 0.6679 9 7 3.9473 -1.4811 2.5674 10 6 5.3876 -1.6150 2.7993 11 1 5.9170 -0.7207 2.4703 12 6 5.9406 -2.8689 2.0899 13 7 6.9270 -3.4813 2.9918 14 6 7.6325 -4.6282 2.7424 15 1 8.3370 -4.9983 3.4725 16 6 7.4421 -5.3150 1.5513 17 7 6.5839 -4.8637 0.6612 18 14 8.4051 -6.8791 1.2108 19 1 9.6760 -6.5380 0.5226 20 1 8.7052 -7.5647 2.4934 21 1 7.5995 -7.7779 0.3456 22 6 7.0260 -2.6598 4.2119 23 6 5.6781 -1.9056 4.2954 24 1 4.9048 -2.5410 4.7273 25 6 5.8195 -0.6249 5.0770 26 6 6.8074 0.2827 4.7437 27 6 6.9344 1.4595 5.4578 28 6 6.0794 1.7243 6.5112 29 6 5.0944 0.8145 6.8476 30 6 4.9649 -0.3603 6.1308 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9562 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7209 -1.2494 40 1 3.3169 -1.8500 3.2057 41 1 6.4209 -2.5838 1.1539 42 1 5.1307 -3.5717 1.8942 43 1 6.4511 -5.3435 -0.1713 44 1 7.1607 -3.2953 5.0873 45 1 7.8499 -1.9512 4.1263 46 1 7.4782 0.0737 3.9235 47 1 7.7036 2.1704 5.1949 48 1 6.1807 2.6421 7.0713 49 1 4.4262 1.0216 7.6704 50 1 4.1956 -1.0713 6.3938 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691548829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:56 Heat of formation + Delta-G solvation = -22.810823 kcal Electronic energy + Delta-G solvation = -31088.200415 eV Core-core repulsion = 27081.101873 eV Total energy + Delta-G solvation = -4007.098542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.77580 -39.60641 -38.40104 -37.15324 -35.93618 -33.90098 -32.72539 -31.00445 -30.74811 -28.57332 -27.50837 -27.34059 -27.11814 -25.64749 -24.44535 -22.72467 -22.13510 -21.33904 -20.08267 -19.90285 -18.81790 -17.43195 -16.99420 -16.73433 -16.25845 -15.62393 -15.41301 -15.09384 -14.80610 -14.69279 -14.35223 -14.16777 -13.82889 -13.71201 -13.26902 -13.02516 -12.99861 -12.79266 -12.51040 -12.45804 -12.28864 -12.25859 -12.15036 -12.09815 -11.69424 -11.43577 -11.28126 -11.18024 -11.08716 -11.04196 -10.94319 -10.79102 -10.74902 -10.44740 -10.14663 -9.99053 -9.80316 -9.13043 -8.83877 -8.79025 -8.65724 -8.37856 -6.90046 -5.74198 -3.09805 1.11246 1.47304 1.51866 2.93444 3.23721 3.38988 3.43839 3.45908 3.88958 4.25097 4.46075 4.58901 4.78445 4.79694 4.85519 4.96193 5.07791 5.19010 5.23181 5.24010 5.43182 5.46881 5.54801 5.56420 5.59566 5.65706 5.67999 5.70597 5.75312 5.75406 5.84291 5.87524 5.99122 6.05957 6.11134 6.15466 6.19414 6.24865 6.30171 6.51185 6.56499 6.59770 6.62405 6.68086 6.87587 6.93511 7.12474 7.45579 7.51264 7.71356 7.78217 8.18415 8.27298 9.16017 9.76479 10.39877 11.36591 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006710 B = 0.004760 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4171.931059 B = 5880.409068 C = 9253.127243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.145 4.145 5 C 0.363 3.637 6 O -0.424 6.424 7 C 0.475 3.525 8 O -0.502 6.502 9 N -0.686 5.686 10 C 0.125 3.875 11 H 0.093 0.907 12 C 0.173 3.827 13 N -0.603 5.603 14 C -0.232 4.232 15 H 0.080 0.920 16 C -0.005 4.005 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.147 3.853 23 C -0.076 4.076 24 H 0.088 0.912 25 C -0.059 4.059 26 C -0.111 4.111 27 C -0.119 4.119 28 C -0.132 4.132 29 C -0.122 4.122 30 C -0.118 4.118 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.404 0.596 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 13.956 4.959 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.202 4.202 5 C 0.233 3.767 6 O -0.294 6.294 7 C 0.257 3.743 8 O -0.378 6.378 9 N -0.338 5.338 10 C 0.020 3.980 11 H 0.111 0.889 12 C 0.048 3.952 13 N -0.330 5.330 14 C -0.360 4.360 15 H 0.098 0.902 16 C -0.202 4.202 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.020 3.980 23 C -0.096 4.096 24 H 0.106 0.894 25 C -0.060 4.060 26 C -0.129 4.129 27 C -0.137 4.137 28 C -0.150 4.150 29 C -0.140 4.140 30 C -0.136 4.136 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.239 0.761 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.143 0.857 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.040 13.851 4.638 17.178 hybrid contribution 0.163 -1.065 0.109 1.083 sum -8.876 12.786 4.747 16.273 Atomic orbital electron populations 1.21777 0.92462 1.02759 1.02239 1.20942 0.97087 0.97413 0.94202 1.21898 1.03501 0.92430 1.02148 1.21916 1.03775 0.99699 0.94793 1.25044 0.88972 0.76064 0.86666 1.90379 1.58814 1.36190 1.43991 1.20715 0.90403 0.80388 0.82770 1.90716 1.56746 1.46630 1.43708 1.45911 1.08866 1.55531 1.23530 1.22660 0.79172 1.01818 0.94332 0.88879 1.21522 0.92651 0.88920 0.92146 1.44398 1.47270 1.26519 1.14821 1.19046 1.16906 0.98420 1.01654 0.90187 1.24818 0.99371 0.99277 0.96722 1.69952 1.37487 1.40107 1.09022 0.86113 0.79118 0.82671 0.77805 1.21514 1.20656 1.21675 1.21568 0.92151 0.93008 0.91224 1.21649 1.01006 0.93318 0.93584 0.89415 1.19796 0.95140 0.95532 0.95506 1.21120 0.98044 0.93739 0.99969 1.21115 0.99335 0.97166 0.96047 1.21070 0.96395 0.99445 0.98065 1.21063 0.98570 0.94518 0.99839 1.21051 0.99340 0.97390 0.95827 0.92158 0.91609 0.91990 0.89959 0.91342 0.92758 0.92422 0.91406 0.89731 0.76101 0.92817 0.92935 0.93636 0.93567 0.95491 0.85672 0.86317 0.86597 0.86490 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.76 37.16 0.29 -1.08 16 2 C -0.09 -1.13 0.76 -155.67 -0.12 -1.25 16 3 C -0.14 -1.53 8.29 37.16 0.31 -1.22 16 4 C -0.14 -1.73 8.29 37.16 0.31 -1.43 16 5 C 0.36 5.27 6.03 -29.80 -0.18 5.09 16 6 O -0.42 -6.50 16.09 5.98 0.10 -6.41 16 7 C 0.48 7.98 7.55 -11.75 -0.09 7.89 16 8 O -0.50 -9.43 13.12 5.49 0.07 -9.36 16 9 N -0.69 -11.47 5.12 -52.58 -0.27 -11.74 16 10 C 0.12 2.32 2.65 -66.10 -0.18 2.14 16 11 H 0.09 1.80 6.78 -51.93 -0.35 1.44 16 12 C 0.17 4.15 5.12 -3.07 -0.02 4.14 16 13 N -0.60 -14.96 3.40 -170.21 -0.58 -15.53 16 14 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 17 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 18 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.15 2.91 6.64 -2.65 -0.02 2.89 16 23 C -0.08 -1.26 2.85 -89.75 -0.26 -1.52 16 24 H 0.09 1.41 7.83 -51.92 -0.41 1.00 16 25 C -0.06 -0.86 5.00 -104.63 -0.52 -1.39 16 26 C -0.11 -1.58 8.31 -39.58 -0.33 -1.91 16 27 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 28 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 29 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 30 C -0.12 -1.52 9.69 -39.59 -0.38 -1.91 16 31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.08 1.03 6.43 -51.93 -0.33 0.70 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.21 6.43 -51.93 -0.33 0.87 16 40 H 0.40 6.10 7.98 -40.82 -0.33 5.77 16 41 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 42 H 0.05 1.40 7.27 -51.93 -0.38 1.03 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.53 6.63 -51.92 -0.34 0.19 16 46 H 0.13 1.84 7.02 -52.49 -0.37 1.47 16 47 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 48 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 50 H 0.12 1.36 7.99 -52.48 -0.42 0.94 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -31.03 400.98 -9.56 -40.59 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.84 Total: 7.62 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.63 Total: -1.84 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.28 Total: -53.56 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.17 Total: -15.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.03 -9.56 -40.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691548829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.777 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds