Wall clock time and date at job start Wed Apr 1 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 C 1.53002 * 109.47366 * 120.00161 * 2 1 3 5 5 H 1.08997 * 109.46946 * 304.93409 * 4 2 1 6 6 C 1.52995 * 109.46969 * 64.93769 * 4 2 1 7 7 N 1.46504 * 109.46778 * 174.99925 * 6 4 2 8 8 C 1.34778 * 119.99631 * 179.97438 * 7 6 4 9 9 O 1.21275 * 120.00303 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99686 * 180.27763 * 8 7 6 11 11 S 1.81000 * 109.47023 * 179.72583 * 10 8 7 12 12 C 1.76200 * 99.99983 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00094 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99979 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00215 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46768 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47221 * 119.99789 * 16 14 12 19 19 H 1.48499 * 109.47375 * 239.99905 * 16 14 12 20 20 N 1.46902 * 109.47007 * 184.93866 * 4 2 1 21 21 C 1.46903 * 111.00128 * 298.31588 * 20 4 2 22 22 C 1.52990 * 109.47359 * 178.40133 * 21 20 4 23 23 H 1.09003 * 109.48161 * 304.97399 * 22 21 20 24 24 C 1.53095 * 109.48529 * 184.94037 * 22 21 20 25 25 C 1.53169 * 109.16672 * 182.40602 * 24 22 21 26 26 C 1.53180 * 109.03698 * 56.98090 * 25 24 22 27 27 C 1.53084 * 109.16116 * 303.01929 * 26 25 24 28 28 O 1.42900 * 109.41628 * 57.60857 * 27 26 25 29 29 H 1.08999 * 109.46821 * 299.99780 * 1 2 3 30 30 H 1.08993 * 109.47097 * 59.99670 * 1 2 3 31 31 H 1.09004 * 109.46575 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47525 * 240.00447 * 2 1 3 33 33 H 1.09003 * 109.47464 * 176.50980 * 3 2 1 34 34 H 1.09000 * 109.47617 * 296.51759 * 3 2 1 35 35 H 1.09010 * 109.46963 * 56.51298 * 3 2 1 36 36 H 1.08999 * 109.47256 * 55.00255 * 6 4 2 37 37 H 1.09002 * 109.47077 * 294.99679 * 6 4 2 38 38 H 0.97000 * 120.00180 * 0.02562 * 7 6 4 39 39 H 1.08996 * 109.47123 * 299.72265 * 10 8 7 40 40 H 1.08999 * 109.47401 * 59.72605 * 10 8 7 41 41 H 0.96998 * 120.00410 * 180.02562 * 15 14 12 42 42 H 1.00900 * 111.00125 * 174.36374 * 20 4 2 43 43 H 1.09003 * 109.46694 * 298.39942 * 21 20 4 44 44 H 1.09002 * 109.47296 * 58.39386 * 21 20 4 45 45 H 1.09002 * 109.51949 * 302.31948 * 24 22 21 46 46 H 1.09004 * 109.52011 * 62.49715 * 24 22 21 47 47 H 1.09004 * 109.54413 * 297.11087 * 25 24 22 48 48 H 1.09003 * 109.61684 * 176.89569 * 25 24 22 49 49 H 1.09003 * 109.51847 * 183.11118 * 26 25 24 50 50 H 1.09006 * 109.57069 * 62.95741 * 26 25 24 51 51 H 1.09000 * 109.48290 * 297.61996 * 27 26 25 52 52 H 1.09001 * 109.48232 * 177.59081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6064 -0.2610 2.1370 6 6 1.6340 -2.1951 1.1886 7 7 2.2229 -2.9109 2.3232 8 6 1.9989 -4.2310 2.4767 9 8 1.3102 -4.8265 1.6755 10 6 2.5995 -4.9660 3.6472 11 16 2.1132 -6.7081 3.5796 12 6 2.9287 -7.3096 5.0210 13 1 3.5105 -6.6362 5.6330 14 6 2.8243 -8.6491 5.3695 15 7 2.1156 -9.4700 4.6234 16 14 3.6894 -9.2870 6.8972 17 1 4.4142 -8.1717 7.5577 18 1 2.6857 -9.8492 7.8362 19 1 4.6557 -10.3471 6.5128 20 7 3.5042 -0.6188 1.3102 21 6 4.1262 -1.2652 0.1469 22 6 5.6455 -1.1036 0.2253 23 1 5.8943 -0.0465 0.3192 24 6 6.2854 -1.6678 -1.0459 25 6 7.8089 -1.5572 -0.9338 26 6 8.2720 -2.2944 0.3265 27 6 7.5555 -1.7059 1.5447 28 8 6.1423 -1.8128 1.3620 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1282 1.4432 0.0626 34 1 1.7286 1.9381 -0.9195 35 1 1.6265 1.9741 0.8572 36 1 1.9928 -2.6329 0.2571 37 1 0.5478 -2.2748 1.2330 38 1 2.7734 -2.4345 2.9642 39 1 3.6860 -4.8902 3.6051 40 1 2.2403 -4.5243 4.5767 41 1 2.0423 -10.4060 4.8671 42 1 3.8583 -1.0070 2.1717 43 1 3.8734 -2.3255 0.1421 44 1 3.7579 -0.7998 -0.7674 45 1 6.0036 -2.7144 -1.1619 46 1 5.9414 -1.0993 -1.9101 47 1 8.0944 -0.5073 -0.8678 48 1 8.2741 -2.0070 -1.8110 49 1 9.3490 -2.1740 0.4439 50 1 8.0313 -3.3540 0.2390 51 1 7.8294 -0.6568 1.6558 52 1 7.8489 -2.2551 2.4394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698959946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:57 Heat of formation + Delta-G solvation = -130.564189 kcal Electronic energy + Delta-G solvation = -28970.700715 eV Core-core repulsion = 25094.373588 eV Total energy + Delta-G solvation = -3876.327127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.07232 -40.32658 -39.10144 -35.35879 -34.78979 -34.59636 -34.52468 -32.25801 -31.22001 -28.90442 -27.87052 -27.68192 -26.76859 -24.97875 -23.65994 -23.16650 -21.71280 -21.15439 -20.28356 -19.77219 -17.95036 -17.57623 -17.45978 -17.27027 -16.89406 -16.64625 -16.48281 -16.10195 -15.82426 -15.42121 -15.24632 -15.10058 -14.99279 -14.65864 -14.51715 -14.01972 -14.01810 -13.76723 -13.57438 -13.33180 -13.20962 -13.17628 -12.95891 -12.92281 -12.69492 -12.60931 -12.53778 -12.20130 -11.99784 -11.82126 -11.74344 -11.69140 -11.56396 -11.33967 -11.18173 -11.17065 -10.98094 -10.33552 -10.29916 -10.17014 -9.43853 -8.68552 -8.36076 -6.14346 1.25058 1.40458 1.45295 1.57078 1.57190 2.21548 2.26528 2.87246 2.98062 3.10464 3.30523 3.68646 3.76937 3.88437 3.93383 3.96854 4.02541 4.11198 4.17146 4.21642 4.25086 4.29895 4.35431 4.42013 4.47135 4.51076 4.62343 4.64424 4.71555 4.80239 4.81346 4.86868 4.91742 4.94204 4.99609 5.05566 5.09132 5.13531 5.20469 5.22616 5.27271 5.38361 5.39688 5.40762 5.50564 5.62584 5.96703 6.18780 6.35483 6.36823 6.42010 7.05169 7.18216 8.73504 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.002935 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.132376 B = 9538.350708 C =11888.534510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 C -0.130 4.130 4 C 0.092 3.908 5 H 0.101 0.899 6 C 0.087 3.913 7 N -0.710 5.710 8 C 0.535 3.465 9 O -0.565 6.565 10 C -0.128 4.128 11 S -0.149 6.149 12 C -0.546 4.546 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.664 5.664 21 C 0.063 3.937 22 C 0.096 3.904 23 H 0.074 0.926 24 C -0.151 4.151 25 C -0.118 4.118 26 C -0.159 4.159 27 C 0.059 3.941 28 O -0.401 6.401 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.410 0.590 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.345 0.655 43 H 0.019 0.981 44 H 0.099 0.901 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.052 0.948 51 H 0.063 0.937 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 26.984 -9.714 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.187 4.187 4 C -0.019 4.019 5 H 0.119 0.881 6 C -0.038 4.038 7 N -0.365 5.365 8 C 0.321 3.679 9 O -0.444 6.444 10 C -0.279 4.279 11 S 0.078 5.922 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.180 1.180 18 H -0.198 1.198 19 H -0.199 1.199 20 N -0.294 5.294 21 C -0.066 4.066 22 C 0.038 3.962 23 H 0.092 0.908 24 C -0.189 4.189 25 C -0.156 4.156 26 C -0.196 4.196 27 C -0.017 4.017 28 O -0.320 6.320 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.247 0.753 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.164 0.836 43 H 0.037 0.963 44 H 0.117 0.883 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.071 0.929 51 H 0.081 0.919 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.967 26.397 -11.232 29.773 hybrid contribution 1.249 -1.123 1.857 2.504 sum 9.216 25.274 -9.374 28.488 Atomic orbital electron populations 1.21906 0.94671 1.01581 1.02761 1.21063 0.95687 0.97394 0.95952 1.21639 1.01988 0.93719 1.01353 1.21926 0.88451 0.90403 1.01091 0.88052 1.22199 0.98672 0.94464 0.88483 1.45691 1.53561 1.07653 1.29559 1.20043 0.79677 0.82599 0.85583 1.90682 1.39880 1.68120 1.45691 1.23346 1.04634 0.99889 1.00052 1.85549 1.68689 1.00929 1.37047 1.23230 1.36648 0.97886 1.11600 0.90013 1.26141 0.95920 0.95863 1.01231 1.70189 1.39591 1.05249 1.39748 0.84895 0.77890 0.78356 0.76734 1.18027 1.19818 1.19877 1.60741 1.03884 1.59399 1.05377 1.22061 0.92143 0.96811 0.95595 1.22156 0.92846 0.95697 0.85490 0.90764 1.22179 0.96660 1.01541 0.98557 1.21563 0.94748 1.01305 0.97958 1.22202 1.01412 1.00090 0.95933 1.22643 0.80191 1.00821 0.98068 1.87899 1.22961 1.73998 1.47186 0.91881 0.91538 0.93611 0.91504 0.91579 0.92703 0.92750 0.92956 0.91809 0.75280 0.87709 0.87276 0.91968 0.83577 0.96306 0.88276 0.93074 0.89359 0.90520 0.90984 0.89441 0.92916 0.91885 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.95 71.98 0.64 -1.44 16 2 C -0.08 -1.12 2.01 -10.79 -0.02 -1.14 16 3 C -0.13 -1.51 9.04 71.98 0.65 -0.86 16 4 C 0.09 1.46 2.30 44.91 0.10 1.56 16 5 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 6 C 0.09 2.05 4.22 86.38 0.36 2.41 16 7 N -0.71 -19.06 5.35 -463.06 -2.48 -21.54 16 8 C 0.54 20.74 7.85 87.66 0.69 21.43 16 9 O -0.57 -27.26 15.86 -3.01 -0.05 -27.31 16 10 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 11 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 12 C -0.55 -31.78 9.50 67.96 0.65 -31.14 16 13 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 14 C 0.01 0.76 5.49 84.86 0.47 1.22 16 15 N -0.91 -56.67 13.22 21.65 0.29 -56.39 16 16 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 N -0.66 -10.41 5.33 -491.58 -2.62 -13.02 16 21 C 0.06 1.10 4.56 86.30 0.39 1.50 16 22 C 0.10 1.61 2.89 30.62 0.09 1.69 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 C -0.15 -2.34 5.42 30.68 0.17 -2.18 16 25 C -0.12 -1.57 6.03 30.71 0.19 -1.38 16 26 C -0.16 -2.41 6.14 30.68 0.19 -2.22 16 27 C 0.06 0.97 6.84 72.01 0.49 1.46 16 28 O -0.40 -8.39 9.95 -148.98 -1.48 -9.87 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.76 6.68 -2.38 -0.02 0.74 16 32 H 0.07 0.99 6.67 -2.39 -0.02 0.97 16 33 H 0.07 0.84 7.33 -2.39 -0.02 0.82 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.05 1.42 6.70 -2.39 -0.02 1.40 16 37 H 0.06 1.64 6.81 -2.39 -0.02 1.62 16 38 H 0.41 8.61 7.18 -92.71 -0.67 7.95 16 39 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 40 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 42 H 0.35 5.85 6.93 -89.69 -0.62 5.23 16 43 H 0.02 0.45 6.48 -2.39 -0.02 0.43 16 44 H 0.10 1.47 6.37 -2.39 -0.02 1.46 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 47 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.90 416.08 -0.37 -76.27 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.38 Total: 29.28 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 5.49 Total: -13.96 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -4.81 Total: -90.95 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.53 Total: -37.18 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -75.90 -0.37 -76.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698959946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.294 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds