Wall clock time and date at job start Wed Apr 1 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47484 * 2 1 4 4 C 1.52994 * 109.47484 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47243 * 186.35427 * 4 3 2 6 6 C 1.46904 * 110.99951 * 289.78682 * 5 4 3 7 7 C 1.52999 * 109.47098 * 88.86701 * 6 5 4 8 8 O 1.42892 * 109.47338 * 66.22230 * 7 6 5 9 9 C 1.46898 * 111.00003 * 165.83467 * 5 4 3 10 10 H 1.08993 * 109.49713 * 310.06082 * 9 5 4 11 11 C 1.53045 * 109.49500 * 189.99697 * 9 5 4 12 12 C 1.53043 * 109.53487 * 178.64915 * 11 9 5 13 13 C 1.53193 * 109.31258 * 61.36969 * 12 11 9 14 14 N 1.46933 * 108.77345 * 305.35965 * 13 12 11 15 15 C 1.34776 * 120.63174 * 233.58711 * 14 13 12 16 16 O 1.21276 * 119.99929 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99758 * 0.02562 * 15 14 13 18 18 S 1.81006 * 109.46991 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00097 * 180.02562 * 18 17 15 20 20 H 1.08008 * 120.00454 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00183 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00143 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99772 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47059 * 90.00390 * 23 21 19 25 25 H 1.48499 * 109.47031 * 210.00541 * 23 21 19 26 26 H 1.48503 * 109.47211 * 330.00315 * 23 21 19 27 27 C 1.46926 * 118.73348 * 53.61153 * 14 13 12 28 28 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47208 * 300.00207 * 1 2 3 30 30 H 1.08997 * 109.46987 * 60.00001 * 1 2 3 31 31 H 1.09000 * 109.47452 * 239.99803 * 2 1 3 32 32 H 1.09007 * 109.47428 * 119.99645 * 2 1 3 33 33 H 1.09000 * 109.46937 * 59.99488 * 3 2 1 34 34 H 1.09002 * 109.46886 * 300.00468 * 3 2 1 35 35 H 1.08997 * 109.46980 * 66.35081 * 4 3 2 36 36 H 1.08999 * 109.46954 * 306.35245 * 4 3 2 37 37 H 1.08998 * 109.47309 * 208.87077 * 6 5 4 38 38 H 1.09007 * 109.46930 * 328.86498 * 6 5 4 39 39 H 1.09002 * 109.46931 * 186.22486 * 7 6 5 40 40 H 1.09009 * 109.47143 * 306.22105 * 7 6 5 41 41 H 0.96699 * 114.00687 * 179.97438 * 8 7 6 42 42 H 1.09006 * 109.45892 * 58.63297 * 11 9 5 43 43 H 1.08994 * 109.46093 * 298.66965 * 11 9 5 44 44 H 1.09002 * 109.49631 * 181.31710 * 12 11 9 45 45 H 1.09001 * 109.49890 * 301.41211 * 12 11 9 46 46 H 1.08996 * 109.58736 * 65.14785 * 13 12 11 47 47 H 1.09000 * 109.58455 * 185.57948 * 13 12 11 48 48 H 1.08994 * 109.47609 * 299.99733 * 17 15 14 49 49 H 1.09007 * 109.47194 * 60.00086 * 17 15 14 50 50 H 0.97000 * 119.99608 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.58135 * 186.60040 * 27 14 13 52 52 H 1.08996 * 109.70419 * 66.25313 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8190 0.1539 6 6 3.7979 3.6088 -1.0568 7 6 2.4153 4.2558 -0.9547 8 8 2.4166 5.2183 0.1015 9 6 5.4886 2.8346 0.4940 10 1 5.6716 2.1570 1.3278 11 6 5.9043 4.2538 0.8883 12 6 7.3850 4.2645 1.2751 13 6 8.2265 3.8314 0.0705 14 7 7.7366 2.5305 -0.4054 15 6 8.5810 1.4903 -0.5514 16 8 8.1644 0.4217 -0.9455 17 6 10.0429 1.6551 -0.2250 18 16 10.9070 0.0923 -0.5206 19 6 12.5455 0.5588 -0.0710 20 1 12.7477 1.5654 0.2644 21 6 13.5766 -0.3673 -0.1478 22 7 14.8006 -0.0189 0.1885 23 14 13.2269 -2.1084 -0.7271 24 1 13.3854 -2.1806 -2.2018 25 1 14.1796 -3.0460 -0.0802 26 1 11.8376 -2.4827 -0.3597 27 6 6.3086 2.3854 -0.7195 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 1.0302 -0.9405 36 1 3.9330 0.8335 0.8286 37 1 4.5563 4.3855 -1.1550 38 1 3.8305 2.9569 -1.9299 39 1 2.1749 4.7498 -1.8961 40 1 1.6695 3.4886 -0.7462 41 1 1.5701 5.6694 0.2238 42 1 5.3050 4.5853 1.7364 43 1 5.7442 4.9264 0.0457 44 1 7.6745 5.2707 1.5783 45 1 7.5501 3.5734 2.1017 46 1 8.1329 4.5704 -0.7252 47 1 9.2713 3.7418 0.3679 48 1 10.4711 2.4326 -0.8576 49 1 10.1519 1.9377 0.8221 50 1 15.5211 -0.6660 0.1345 51 1 6.0880 1.3417 -0.9434 52 1 6.0569 3.0048 -1.5803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707206927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:14 Heat of formation + Delta-G solvation = -87.223772 kcal Electronic energy + Delta-G solvation = -28976.234919 eV Core-core repulsion = 25101.787173 eV Total energy + Delta-G solvation = -3874.447746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.46583 -38.85151 -37.01990 -36.25157 -34.79790 -32.51877 -32.42935 -31.06018 -29.88825 -29.31925 -27.31742 -25.67130 -25.09622 -23.68288 -23.25792 -21.77787 -21.20833 -20.13340 -18.95085 -17.80980 -17.70552 -16.89158 -16.41496 -16.03491 -15.56536 -15.39029 -15.09880 -14.96063 -14.62398 -14.40526 -14.21691 -13.88436 -13.75603 -13.67088 -13.51770 -13.32574 -13.04346 -12.86338 -12.78340 -12.65541 -12.42272 -12.04081 -11.71201 -11.58075 -11.39731 -11.32315 -11.26099 -11.17379 -11.01947 -10.99849 -10.93158 -10.88949 -10.59864 -10.49060 -9.94165 -9.86393 -9.50249 -9.00934 -8.95260 -8.49299 -8.25027 -6.92392 -6.29168 -4.00876 2.69417 2.92114 3.16298 3.32733 3.49912 3.51175 3.62641 4.01731 4.32679 4.46000 4.50529 4.59267 4.68890 4.73973 4.76132 4.83613 4.84845 4.92373 4.95253 5.04446 5.09053 5.09896 5.12782 5.19925 5.23589 5.28575 5.34422 5.39743 5.45020 5.48070 5.55802 5.57454 5.64441 5.69626 5.70177 5.75152 5.76142 5.83273 5.86910 5.97594 5.98564 6.03484 6.08850 6.16548 6.46096 6.82223 6.89758 7.42213 7.46184 7.93888 8.41178 8.42922 9.17055 10.80009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002412 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.964956 B =11603.627417 C =12999.178242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.117 4.117 4 C 0.048 3.952 5 N -0.517 5.517 6 C 0.045 3.955 7 C 0.072 3.928 8 O -0.559 6.559 9 C 0.074 3.926 10 H 0.087 0.913 11 C -0.105 4.105 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.614 5.614 15 C 0.534 3.466 16 O -0.521 6.521 17 C -0.120 4.120 18 S -0.144 6.144 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.084 3.916 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.371 0.629 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.090 0.910 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.702 10.731 -0.341 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.080 4.080 5 N -0.239 5.239 6 C -0.083 4.083 7 C -0.006 4.006 8 O -0.363 6.363 9 C -0.035 4.035 10 H 0.105 0.895 11 C -0.143 4.143 12 C -0.174 4.174 13 C -0.018 4.018 14 N -0.350 5.350 15 C 0.321 3.679 16 O -0.396 6.396 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.041 4.041 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.216 0.784 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.081 0.919 51 H 0.108 0.892 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.749 9.098 -0.461 30.158 hybrid contribution 0.556 0.377 -0.568 0.880 sum -28.193 9.475 -1.029 29.761 Atomic orbital electron populations 1.21750 0.95831 1.01581 1.01635 1.21534 0.95853 0.96870 1.02265 1.21837 0.94668 0.96517 1.02477 1.22306 0.95550 0.89122 1.00974 1.62189 1.15113 1.11931 1.34690 1.22300 0.97351 0.97359 0.91320 1.22557 0.97656 0.91239 0.89172 1.86578 1.37982 1.56540 1.55206 1.22142 0.85715 0.98398 0.97279 0.89497 1.21534 0.95228 0.95317 1.02185 1.21946 0.95099 1.02233 0.98133 1.21799 0.99308 0.84390 0.96326 1.48003 1.07756 1.11626 1.67661 1.20326 0.87773 0.83115 0.76649 1.90677 1.77873 1.26052 1.44990 1.23304 0.93617 1.05047 1.05123 1.84789 1.06392 1.12141 1.88403 1.22305 0.90727 1.02142 1.51622 0.89383 1.24712 0.94033 0.98885 0.93693 1.69938 0.99845 1.35704 1.46167 0.86734 0.80922 0.84161 0.80031 1.19235 1.19938 1.15940 1.22292 0.80939 1.03227 0.97644 0.92791 0.92755 0.92946 0.92055 0.91832 0.90969 0.91732 0.94375 0.90601 0.89993 0.92697 0.94240 0.92253 0.78350 0.90578 0.91749 0.90283 0.91152 0.91465 0.89024 0.88565 0.88450 0.91946 0.89180 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.15 0.37 -0.55 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.86 4.06 -26.73 -0.11 -0.97 16 4 C 0.05 0.44 4.39 -3.83 -0.02 0.42 16 5 N -0.52 -4.86 4.32 -226.51 -0.98 -5.84 16 6 C 0.04 0.37 3.69 -3.82 -0.01 0.36 16 7 C 0.07 0.50 7.05 37.16 0.26 0.76 16 8 O -0.56 -4.47 13.62 -35.23 -0.48 -4.95 16 9 C 0.07 0.78 2.31 -67.59 -0.16 0.62 16 10 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 11 C -0.10 -0.99 5.12 -26.69 -0.14 -1.13 16 12 C -0.14 -1.26 6.08 -26.61 -0.16 -1.42 16 13 C 0.10 1.14 6.34 -3.71 -0.02 1.12 16 14 N -0.61 -8.60 2.97 -172.77 -0.51 -9.12 16 15 C 0.53 9.88 7.72 -10.99 -0.08 9.79 16 16 O -0.52 -11.49 15.27 5.56 0.08 -11.41 16 17 C -0.12 -2.38 4.50 36.00 0.16 -2.22 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 19 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 20 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 23 Si 0.86 21.91 27.74 -169.99 -4.71 17.19 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 27 C 0.08 1.03 5.16 -3.71 -0.02 1.01 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.43 5.63 -51.93 -0.29 0.14 16 35 H 0.04 0.37 7.08 -51.93 -0.37 0.00 16 36 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 37 H 0.08 0.73 5.33 -51.93 -0.28 0.45 16 38 H 0.05 0.44 7.49 -51.92 -0.39 0.05 16 39 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.38 4.51 -51.92 -0.23 0.15 16 41 H 0.37 1.42 9.12 45.56 0.42 1.83 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 48 H 0.10 1.78 7.94 -51.92 -0.41 1.36 16 49 H 0.10 1.80 7.69 -51.91 -0.40 1.40 16 50 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.09 1.30 6.16 -51.93 -0.32 0.98 16 52 H 0.06 0.69 6.50 -51.93 -0.34 0.36 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -34.35 406.54 -9.86 -44.21 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.29 Total: 0.55 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 0.13 Total: -5.27 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.72 Total: -40.77 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.39 Total: -16.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.35 -9.86 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707206927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.014 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds