Wall clock time and date at job start Wed Apr 1 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 119.99980 * 2 1 4 4 C 1.32995 * 119.99703 * 179.97438 * 2 1 3 5 5 C 1.47099 * 120.00222 * 351.89183 * 4 2 1 6 6 O 1.21613 * 119.99800 * 353.96916 * 5 4 2 7 7 N 1.34774 * 119.99845 * 173.97888 * 5 4 2 8 8 C 1.46498 * 119.99914 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.84909 * 23.80542 * 8 7 5 10 10 C 1.53779 * 113.61417 * 155.00003 * 8 7 5 11 11 C 1.53781 * 87.08088 * 139.98273 * 10 8 7 12 12 H 1.08998 * 113.61401 * 89.20094 * 11 10 8 13 13 N 1.46901 * 113.61540 * 220.01669 * 11 10 8 14 14 C 1.46890 * 111.00264 * 205.00213 * 13 11 10 15 15 C 1.50705 * 109.47078 * 180.02562 * 14 13 11 16 16 C 1.38301 * 119.93232 * 90.00265 * 15 14 13 17 17 C 1.38096 * 120.07210 * 179.72359 * 16 15 14 18 18 C 1.38880 * 119.92861 * 0.25103 * 17 16 15 19 19 O 1.35749 * 120.07092 * 179.97438 * 18 17 16 20 20 C 1.34827 * 116.99896 * 353.88506 * 19 18 17 21 21 H 1.08002 * 120.00094 * 5.41275 * 20 19 18 22 22 C 1.38660 * 120.00013 * 185.41523 * 20 19 18 23 23 N 1.31557 * 120.00053 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47169 * 90.00094 * 24 22 20 26 26 H 1.48497 * 109.47251 * 209.99886 * 24 22 20 27 27 H 1.48508 * 109.47143 * 330.00119 * 24 22 20 28 28 C 1.38886 * 119.86009 * 0.02562 * 18 17 16 29 29 C 1.38088 * 119.93329 * 359.97438 * 28 18 17 30 30 C 1.53777 * 87.07950 * 334.56639 * 11 10 8 31 31 H 1.09000 * 109.47168 * 263.62181 * 1 2 3 32 32 H 1.08997 * 109.47249 * 23.61881 * 1 2 3 33 33 H 1.08998 * 109.47161 * 143.62199 * 1 2 3 34 34 H 1.08997 * 109.47048 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46986 * 300.00285 * 3 2 1 36 36 H 1.09003 * 109.47289 * 59.99812 * 3 2 1 37 37 H 1.08000 * 119.99717 * 171.88405 * 4 2 1 38 38 H 0.97000 * 120.00227 * 359.97438 * 7 5 4 39 39 H 1.08995 * 113.61768 * 25.43470 * 10 8 7 40 40 H 1.09005 * 113.68678 * 254.54038 * 10 8 7 41 41 H 1.00899 * 111.00034 * 81.04266 * 13 11 10 42 42 H 1.09004 * 109.47546 * 60.00027 * 14 13 11 43 43 H 1.08997 * 109.46963 * 299.99847 * 14 13 11 44 44 H 1.08005 * 119.96602 * 359.97438 * 16 15 14 45 45 H 1.07993 * 120.03764 * 180.22398 * 17 16 15 46 46 H 0.96989 * 120.00025 * 180.02562 * 23 22 20 47 47 H 1.08004 * 120.03258 * 180.02562 * 28 18 17 48 48 H 1.07998 * 119.96587 * 180.02562 * 29 28 18 49 49 H 1.09006 * 113.61362 * 139.98465 * 30 11 10 50 50 H 1.08998 * 113.61769 * 270.88094 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4474 -2.4193 0.1808 6 8 0.2590 -2.4090 0.4384 7 7 2.1008 -3.5919 0.0605 8 6 1.3794 -4.8542 0.2406 9 1 0.3092 -4.7601 0.0563 10 6 2.0276 -6.0434 -0.4877 11 6 1.6880 -6.8868 0.7526 12 1 0.7025 -7.3504 0.7088 13 7 2.7471 -7.8326 1.1291 14 6 2.1958 -8.9692 1.8787 15 6 3.3093 -9.9154 2.2473 16 6 3.9859 -9.7527 3.4425 17 6 5.0029 -10.6215 3.7858 18 6 5.3496 -11.6564 2.9269 19 8 6.3492 -12.5118 3.2613 20 6 7.0495 -12.2283 4.3780 21 1 6.7500 -11.4043 5.0087 22 6 8.1542 -12.9948 4.7169 23 7 8.5188 -13.9989 3.9490 24 14 9.1248 -12.6016 6.2638 25 1 8.5588 -13.3588 7.4091 26 1 10.5452 -12.9880 6.0685 27 1 9.0418 -11.1455 6.5435 28 6 4.6721 -11.8136 1.7248 29 6 3.6560 -10.9416 1.3873 30 6 1.7190 -5.5756 1.5555 31 1 -0.3633 -0.1142 1.0213 32 1 -0.3633 0.9415 -0.4117 33 1 -0.3633 -0.8274 -0.6095 34 1 3.3321 1.1059 -0.0005 35 1 1.9971 1.8767 -0.8900 36 1 1.9971 1.8767 0.8900 37 1 3.2438 -1.1566 -0.1315 38 1 3.0487 -3.6001 -0.1452 39 1 3.0980 -5.9228 -0.6539 40 1 1.4919 -6.3519 -1.3855 41 1 3.4739 -7.3709 1.6550 42 1 1.4644 -9.4911 1.2615 43 1 1.7128 -8.6062 2.7858 44 1 3.7158 -8.9477 4.1100 45 1 5.5284 -10.4961 4.7209 46 1 9.2913 -14.5352 4.1863 47 1 4.9391 -12.6177 1.0550 48 1 3.1286 -11.0636 0.4528 49 1 0.9331 -5.5055 2.3076 50 1 2.7050 -5.3271 1.9479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713979850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:31 Heat of formation + Delta-G solvation = -6.976133 kcal Electronic energy + Delta-G solvation = -27913.101120 eV Core-core repulsion = 23906.689222 eV Total energy + Delta-G solvation = -4006.411898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.49388 -39.21445 -38.83262 -36.83745 -35.82136 -34.62756 -33.02002 -32.19489 -30.16590 -29.33214 -28.42002 -28.04930 -25.92645 -25.66817 -24.55697 -23.22329 -21.94997 -21.18706 -20.65518 -20.15343 -18.86506 -17.97795 -17.35696 -17.00345 -16.54045 -15.86697 -15.43650 -14.91759 -14.88692 -14.70251 -14.54639 -14.32468 -14.20468 -13.92892 -13.78210 -13.64036 -13.49606 -12.91961 -12.84026 -12.72985 -12.69643 -12.63010 -12.40964 -12.15898 -12.03405 -11.98125 -11.61811 -11.48400 -11.36713 -11.18559 -10.97653 -10.76056 -10.62853 -10.48675 -10.41354 -9.87278 -9.58502 -9.33705 -9.16149 -8.84187 -8.32493 -8.16378 -7.18510 -6.45639 -4.04613 0.99038 2.22904 2.28131 2.96380 2.97718 3.11690 3.12691 3.17475 3.95831 4.14690 4.27454 4.39134 4.41606 4.45867 4.62723 4.65472 4.78310 4.83534 4.97850 5.02153 5.09241 5.24292 5.29235 5.30093 5.35519 5.38428 5.44986 5.47542 5.48105 5.52829 5.67773 5.71326 5.75777 5.78507 5.80695 5.89488 5.93415 6.10066 6.14798 6.21780 6.32558 6.43346 6.71289 6.90294 7.02071 7.10185 7.26175 7.28066 7.34413 7.43299 7.47599 7.83397 7.98869 7.99394 8.99981 9.70459 10.72389 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.001519 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.841322 B =18427.063502 C =19560.230767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.128 4.128 4 C -0.239 4.239 5 C 0.545 3.455 6 O -0.544 6.544 7 N -0.716 5.716 8 C 0.123 3.877 9 H 0.114 0.886 10 C -0.134 4.134 11 C 0.070 3.930 12 H 0.098 0.902 13 N -0.671 5.671 14 C 0.118 3.882 15 C -0.186 4.186 16 C -0.066 4.066 17 C -0.235 4.235 18 C 0.156 3.844 19 O -0.178 6.178 20 C -0.392 4.392 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.194 4.194 29 C -0.052 4.052 30 C -0.180 4.180 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.344 0.656 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.270 0.730 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.069 0.931 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 25.511 -8.196 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.033 4.033 3 C -0.185 4.185 4 C -0.260 4.260 5 C 0.336 3.664 6 O -0.424 6.424 7 N -0.366 5.366 8 C 0.017 3.983 9 H 0.131 0.869 10 C -0.173 4.173 11 C -0.041 4.041 12 H 0.116 0.884 13 N -0.301 5.301 14 C -0.010 4.010 15 C -0.188 4.188 16 C -0.085 4.085 17 C -0.254 4.254 18 C 0.102 3.898 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.214 4.214 29 C -0.071 4.071 30 C -0.221 4.221 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.120 0.880 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.134 0.866 48 H 0.130 0.870 49 H 0.088 0.912 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.657 24.761 -8.721 29.592 hybrid contribution 1.008 0.596 1.649 2.022 sum -12.650 25.357 -7.073 29.207 Atomic orbital electron populations 1.21108 0.90876 1.02271 1.03727 1.22585 0.96923 0.94519 0.89247 1.21030 0.99921 0.94497 1.03007 1.22421 1.00289 0.92069 1.11252 1.18612 0.86871 0.84355 0.76611 1.90759 1.15400 1.87679 1.48529 1.45895 1.13044 1.05432 1.72209 1.22372 0.97991 0.81490 0.96423 0.86856 1.23472 1.01863 0.93879 0.98081 1.22798 0.95833 0.90078 0.95413 0.88373 1.60510 1.11601 1.09840 1.48178 1.20664 0.94776 0.90347 0.95251 1.19134 1.02406 1.00225 0.96996 1.20587 0.94906 0.97491 0.95469 1.21113 1.02592 0.99419 1.02285 1.19411 0.89030 0.88859 0.92505 1.83978 1.38988 1.43062 1.42139 1.21320 1.09114 1.16817 0.99588 0.89114 1.25285 0.96363 0.95565 0.99276 1.70035 1.25643 1.17084 1.36953 0.85721 0.78726 0.78974 0.80048 1.19890 1.20241 1.19235 1.20233 1.00825 1.03528 0.96789 1.20467 0.95478 0.93582 0.97530 1.24212 1.02580 0.97540 0.97754 0.90244 0.92667 0.89456 0.91321 0.90637 0.90285 0.85640 0.76418 0.89121 0.90698 0.83681 0.91094 0.95342 0.87980 0.85685 0.92023 0.86569 0.87032 0.91215 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 8.45 36.01 0.30 -0.64 16 2 C -0.03 -0.21 6.10 -101.17 -0.62 -0.83 16 3 C -0.13 -0.54 10.09 36.00 0.36 -0.17 16 4 C -0.24 -1.76 9.62 -37.81 -0.36 -2.13 16 5 C 0.55 5.30 7.61 -12.67 -0.10 5.21 16 6 O -0.54 -6.93 12.91 5.27 0.07 -6.86 16 7 N -0.72 -5.66 5.35 -54.20 -0.29 -5.95 16 8 C 0.12 1.04 4.24 -67.12 -0.28 0.76 16 9 H 0.11 1.10 7.46 -51.93 -0.39 0.72 16 10 C -0.13 -1.08 7.63 -25.92 -0.20 -1.28 16 11 C 0.07 0.65 4.18 -66.90 -0.28 0.37 16 12 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 13 N -0.67 -7.76 6.61 -107.14 -0.71 -8.46 16 14 C 0.12 1.52 5.65 -4.98 -0.03 1.49 16 15 C -0.19 -3.09 5.40 -104.57 -0.56 -3.65 16 16 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 17 C -0.23 -5.05 9.17 -39.40 -0.36 -5.41 16 18 C 0.16 3.76 6.65 -39.10 -0.26 3.50 16 19 O -0.18 -5.10 9.76 0.06 0.00 -5.10 16 20 C -0.39 -10.95 9.49 30.89 0.29 -10.65 16 21 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 24 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 28 C -0.19 -4.11 9.99 -39.40 -0.39 -4.50 16 29 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 30 C -0.18 -1.58 7.49 -25.92 -0.19 -1.78 16 31 H 0.08 0.68 7.98 -51.93 -0.41 0.27 16 32 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.09 0.84 6.27 -51.93 -0.33 0.51 16 34 H 0.07 0.24 7.82 -51.93 -0.41 -0.17 16 35 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.13 0.64 7.89 -52.49 -0.41 0.22 16 38 H 0.40 2.30 8.71 -40.82 -0.36 1.94 16 39 H 0.09 0.74 8.12 -51.93 -0.42 0.31 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.34 4.02 8.19 -39.29 -0.32 3.69 16 42 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 45 H 0.13 2.71 5.65 -52.49 -0.30 2.41 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 48 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.76 7.82 -51.93 -0.41 0.35 16 LS Contribution 414.09 15.07 6.24 6.24 Total: -1.00 -32.18 414.09 -10.28 -42.46 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.78 Total: 8.37 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -3.54 Total: -21.62 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.24 Total: -38.91 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.18 -10.28 -42.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713979850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.483 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds