Wall clock time and date at job start Wed Apr 1 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 119.99980 * 2 1 4 4 C 1.32995 * 119.99703 * 179.97438 * 2 1 3 5 5 C 1.47099 * 120.00222 * 351.89183 * 4 2 1 6 6 O 1.21613 * 119.99800 * 353.96916 * 5 4 2 7 7 N 1.34774 * 119.99845 * 173.97888 * 5 4 2 8 8 C 1.46498 * 119.99914 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.84909 * 23.80542 * 8 7 5 10 10 C 1.53779 * 113.61417 * 155.00003 * 8 7 5 11 11 C 1.53781 * 87.08088 * 139.98273 * 10 8 7 12 12 H 1.08998 * 113.61401 * 89.20094 * 11 10 8 13 13 N 1.46901 * 113.61540 * 220.01669 * 11 10 8 14 14 C 1.46890 * 111.00264 * 205.00213 * 13 11 10 15 15 C 1.50705 * 109.47078 * 180.02562 * 14 13 11 16 16 C 1.38301 * 119.93232 * 90.00265 * 15 14 13 17 17 C 1.38096 * 120.07210 * 179.72359 * 16 15 14 18 18 C 1.38880 * 119.92861 * 0.25103 * 17 16 15 19 19 O 1.35749 * 120.07092 * 179.97438 * 18 17 16 20 20 C 1.34827 * 116.99896 * 353.88506 * 19 18 17 21 21 H 1.08002 * 120.00094 * 5.41275 * 20 19 18 22 22 C 1.38660 * 120.00013 * 185.41523 * 20 19 18 23 23 N 1.31557 * 120.00053 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47169 * 90.00094 * 24 22 20 26 26 H 1.48497 * 109.47251 * 209.99886 * 24 22 20 27 27 H 1.48508 * 109.47143 * 330.00119 * 24 22 20 28 28 C 1.38886 * 119.86009 * 0.02562 * 18 17 16 29 29 C 1.38088 * 119.93329 * 359.97438 * 28 18 17 30 30 C 1.53777 * 87.07950 * 334.56639 * 11 10 8 31 31 H 1.09000 * 109.47168 * 263.62181 * 1 2 3 32 32 H 1.08997 * 109.47249 * 23.61881 * 1 2 3 33 33 H 1.08998 * 109.47161 * 143.62199 * 1 2 3 34 34 H 1.08997 * 109.47048 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46986 * 300.00285 * 3 2 1 36 36 H 1.09003 * 109.47289 * 59.99812 * 3 2 1 37 37 H 1.08000 * 119.99717 * 171.88405 * 4 2 1 38 38 H 0.97000 * 120.00227 * 359.97438 * 7 5 4 39 39 H 1.08995 * 113.61768 * 25.43470 * 10 8 7 40 40 H 1.09005 * 113.68678 * 254.54038 * 10 8 7 41 41 H 1.00899 * 111.00034 * 81.04266 * 13 11 10 42 42 H 1.09004 * 109.47546 * 60.00027 * 14 13 11 43 43 H 1.08997 * 109.46963 * 299.99847 * 14 13 11 44 44 H 1.08005 * 119.96602 * 359.97438 * 16 15 14 45 45 H 1.07993 * 120.03764 * 180.22398 * 17 16 15 46 46 H 0.96989 * 120.00025 * 180.02562 * 23 22 20 47 47 H 1.08004 * 120.03258 * 180.02562 * 28 18 17 48 48 H 1.07998 * 119.96587 * 180.02562 * 29 28 18 49 49 H 1.09006 * 113.61362 * 139.98465 * 30 11 10 50 50 H 1.08998 * 113.61769 * 270.88094 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4474 -2.4193 0.1808 6 8 0.2590 -2.4090 0.4384 7 7 2.1008 -3.5919 0.0605 8 6 1.3794 -4.8542 0.2406 9 1 0.3092 -4.7601 0.0563 10 6 2.0276 -6.0434 -0.4877 11 6 1.6880 -6.8868 0.7526 12 1 0.7025 -7.3504 0.7088 13 7 2.7471 -7.8326 1.1291 14 6 2.1958 -8.9692 1.8787 15 6 3.3093 -9.9154 2.2473 16 6 3.9859 -9.7527 3.4425 17 6 5.0029 -10.6215 3.7858 18 6 5.3496 -11.6564 2.9269 19 8 6.3492 -12.5118 3.2613 20 6 7.0495 -12.2283 4.3780 21 1 6.7500 -11.4043 5.0087 22 6 8.1542 -12.9948 4.7169 23 7 8.5188 -13.9989 3.9490 24 14 9.1248 -12.6016 6.2638 25 1 8.5588 -13.3588 7.4091 26 1 10.5452 -12.9880 6.0685 27 1 9.0418 -11.1455 6.5435 28 6 4.6721 -11.8136 1.7248 29 6 3.6560 -10.9416 1.3873 30 6 1.7190 -5.5756 1.5555 31 1 -0.3633 -0.1142 1.0213 32 1 -0.3633 0.9415 -0.4117 33 1 -0.3633 -0.8274 -0.6095 34 1 3.3321 1.1059 -0.0005 35 1 1.9971 1.8767 -0.8900 36 1 1.9971 1.8767 0.8900 37 1 3.2438 -1.1566 -0.1315 38 1 3.0487 -3.6001 -0.1452 39 1 3.0980 -5.9228 -0.6539 40 1 1.4919 -6.3519 -1.3855 41 1 3.4739 -7.3709 1.6550 42 1 1.4644 -9.4911 1.2615 43 1 1.7128 -8.6062 2.7858 44 1 3.7158 -8.9477 4.1100 45 1 5.5284 -10.4961 4.7209 46 1 9.2913 -14.5352 4.1863 47 1 4.9391 -12.6177 1.0550 48 1 3.1286 -11.0636 0.4528 49 1 0.9331 -5.5055 2.3076 50 1 2.7050 -5.3271 1.9479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713979850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:29 Heat of formation + Delta-G solvation = -27.856158 kcal Electronic energy + Delta-G solvation = -27914.006546 eV Core-core repulsion = 23906.689222 eV Total energy + Delta-G solvation = -4007.317324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.22190 -40.76312 -39.75151 -38.43858 -36.42044 -35.59273 -34.34967 -33.73834 -31.76523 -30.66906 -28.95353 -28.61678 -27.50995 -26.61006 -25.80386 -24.09838 -23.58213 -22.03476 -21.86819 -21.03522 -19.82687 -19.46952 -18.82477 -18.02043 -17.24795 -16.84327 -16.44762 -16.30621 -16.13790 -15.84594 -15.55924 -15.43836 -15.27053 -15.16940 -14.98941 -14.60643 -14.48235 -14.35113 -13.98794 -13.71899 -13.54025 -13.40110 -13.32860 -13.20523 -12.99054 -12.96893 -12.67183 -12.56607 -12.43539 -12.30808 -12.22702 -12.12122 -12.06956 -11.69071 -11.61069 -11.15831 -10.78659 -10.60399 -10.20689 -9.78851 -9.75456 -9.22973 -8.87849 -8.46368 -6.14665 0.41447 0.62707 0.69663 1.35084 1.44266 1.52589 2.18111 2.30448 2.32677 2.80906 3.12598 3.44881 3.54794 3.63612 3.73634 3.86340 3.93483 3.94301 3.99779 4.08451 4.14027 4.25634 4.31395 4.50773 4.55804 4.61891 4.64255 4.68895 4.75950 4.79400 4.80983 4.83462 4.85110 4.90765 5.00472 5.07070 5.10753 5.12021 5.14531 5.16973 5.22606 5.33612 5.55390 5.59683 5.61775 5.67744 5.73288 5.84028 6.03972 6.17184 6.28172 6.50191 6.65737 6.98344 7.32014 7.79916 8.76918 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.001519 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.841322 B =18427.063502 C =19560.230767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.031 4.031 3 C -0.125 4.125 4 C -0.250 4.250 5 C 0.536 3.464 6 O -0.583 6.583 7 N -0.707 5.707 8 C 0.124 3.876 9 H 0.099 0.901 10 C -0.123 4.123 11 C 0.072 3.928 12 H 0.105 0.895 13 N -0.677 5.677 14 C 0.121 3.879 15 C -0.158 4.158 16 C -0.062 4.062 17 C -0.243 4.243 18 C 0.113 3.887 19 O -0.235 6.235 20 C -0.414 4.414 21 H 0.101 0.899 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.206 4.206 29 C -0.047 4.047 30 C -0.174 4.174 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.413 0.587 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.344 0.656 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.137 0.863 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.111 0.889 48 H 0.145 0.855 49 H 0.063 0.937 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 28.686 -8.277 32.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.182 4.182 4 C -0.271 4.271 5 C 0.328 3.672 6 O -0.465 6.465 7 N -0.357 5.357 8 C 0.018 3.982 9 H 0.117 0.883 10 C -0.162 4.162 11 C -0.038 4.038 12 H 0.123 0.877 13 N -0.307 5.307 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.081 4.081 17 C -0.263 4.263 18 C 0.063 3.937 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.226 4.226 29 C -0.065 4.065 30 C -0.214 4.214 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.250 0.750 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.164 0.836 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.155 0.845 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.162 0.838 49 H 0.081 0.919 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.653 27.972 -8.830 32.789 hybrid contribution 0.978 -0.182 1.490 1.791 sum -13.675 27.789 -7.340 31.830 Atomic orbital electron populations 1.21040 0.91959 1.02333 1.02553 1.22864 0.96490 0.95809 0.88120 1.21078 1.00179 0.93021 1.03882 1.22568 1.01407 0.91018 1.12100 1.19098 0.86598 0.85489 0.76055 1.90745 1.17076 1.88252 1.50460 1.45833 1.13591 1.04874 1.71437 1.22253 0.97435 0.81937 0.96606 0.88290 1.23392 1.02060 0.92969 0.97790 1.22833 0.95465 0.89678 0.95874 0.87672 1.60463 1.12307 1.10114 1.47791 1.20662 0.93272 0.90190 0.96554 1.19652 1.01495 0.99325 0.95406 1.20940 0.93416 0.97255 0.96466 1.21220 1.03723 0.99592 1.01718 1.19961 0.89316 0.90068 0.94398 1.83940 1.41303 1.45647 1.43249 1.21814 1.09733 1.17419 1.00009 0.88152 1.26584 0.97229 0.95171 1.03048 1.70183 1.26920 1.19051 1.39754 0.84592 0.76871 0.79494 0.75275 1.18839 1.19589 1.17662 1.20477 1.01714 1.04368 0.96009 1.20853 0.94170 0.92649 0.98868 1.24152 1.02467 0.97281 0.97549 0.91606 0.90728 0.91735 0.90203 0.89436 0.89530 0.83138 0.74995 0.88732 0.90209 0.83645 0.89620 0.93845 0.84533 0.86549 0.91876 0.87131 0.83768 0.91867 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.45 71.24 0.60 -1.23 16 2 C -0.03 -0.38 6.10 -17.62 -0.11 -0.48 16 3 C -0.13 -0.72 10.09 71.23 0.72 0.00 16 4 C -0.25 -3.27 9.62 23.43 0.23 -3.05 16 5 C 0.54 9.97 7.61 86.57 0.66 10.63 16 6 O -0.58 -14.98 12.91 -4.07 -0.05 -15.03 16 7 N -0.71 -10.01 5.35 -443.65 -2.37 -12.39 16 8 C 0.12 1.88 4.24 45.52 0.19 2.07 16 9 H 0.10 1.84 7.46 -2.39 -0.02 1.83 16 10 C -0.12 -1.65 7.63 31.12 0.24 -1.41 16 11 C 0.07 1.09 4.18 45.44 0.19 1.28 16 12 H 0.11 1.49 7.87 -2.39 -0.02 1.48 16 13 N -0.68 -12.96 6.61 -492.87 -3.26 -16.22 16 14 C 0.12 2.59 5.65 85.56 0.48 3.07 16 15 C -0.16 -4.70 5.40 -19.83 -0.11 -4.81 16 16 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 17 C -0.24 -10.51 9.17 22.39 0.21 -10.30 16 18 C 0.11 5.65 6.65 22.58 0.15 5.80 16 19 O -0.23 -14.28 9.76 -22.70 -0.22 -14.50 16 20 C -0.41 -24.23 9.49 67.92 0.64 -23.59 16 21 H 0.10 5.39 5.21 -2.91 -0.02 5.37 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 23 N -0.92 -56.80 13.67 21.62 0.30 -56.50 16 24 Si 1.02 42.89 29.55 68.60 2.03 44.92 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 28 C -0.21 -8.84 9.99 22.39 0.22 -8.61 16 29 C -0.05 -1.56 9.69 22.25 0.22 -1.35 16 30 C -0.17 -2.62 7.49 31.12 0.23 -2.38 16 31 H 0.07 1.15 7.98 -2.39 -0.02 1.13 16 32 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.06 1.28 6.27 -2.39 -0.01 1.26 16 34 H 0.08 0.30 7.82 -2.39 -0.02 0.28 16 35 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.15 1.11 7.89 -2.91 -0.02 1.09 16 38 H 0.41 3.77 8.71 -92.71 -0.81 2.96 16 39 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 40 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.34 6.71 8.19 -89.69 -0.73 5.97 16 42 H 0.09 1.66 8.08 -2.38 -0.02 1.65 16 43 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.12 5.14 5.65 -2.91 -0.02 5.12 16 46 H 0.27 15.36 8.31 -92.72 -0.77 14.59 16 47 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 48 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 49 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.09 1.31 7.82 -2.39 -0.02 1.30 16 Total: -1.00 -75.65 414.09 1.29 -74.36 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.58 Total: 32.43 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 5.45 Total: -37.06 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -5.34 Total: -85.11 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.27 Total: -29.53 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -75.65 1.29 -74.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713979850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.503 kcal (2) G-P(sol) polarization free energy of solvation -75.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds