Wall clock time and date at job start Wed Apr 1 2020 03:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 120.00132 * 2 1 4 4 C 1.50700 * 120.00119 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.33169 * 346.28613 * 4 2 1 6 6 O 1.44424 * 110.37358 * 223.92306 * 4 2 1 7 7 C 1.44427 * 105.27238 * 200.65711 * 6 4 2 8 8 C 1.54794 * 104.86035 * 40.46070 * 7 6 4 9 9 C 1.54474 * 110.37186 * 108.53798 * 4 2 1 10 10 H 1.09001 * 110.51133 * 261.59302 * 9 4 2 11 11 C 1.50696 * 110.51202 * 24.16792 * 9 4 2 12 12 O 1.21277 * 120.00113 * 85.99296 * 11 9 4 13 13 N 1.34778 * 119.99955 * 266.26216 * 11 9 4 14 14 C 1.46499 * 120.00228 * 179.72440 * 13 11 9 15 15 C 1.52999 * 109.47316 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.46992 * 294.99764 * 15 14 13 17 17 N 1.46498 * 109.47365 * 54.99834 * 15 14 13 18 18 C 1.36934 * 120.00471 * 205.00227 * 17 15 14 19 19 H 1.07999 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00279 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99885 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47100 * 89.99884 * 22 20 18 24 24 H 1.48495 * 109.47052 * 210.00127 * 22 20 18 25 25 H 1.48505 * 109.46865 * 330.00085 * 22 20 18 26 26 C 1.50697 * 109.46862 * 175.00160 * 15 14 13 27 27 C 1.38238 * 120.00080 * 279.71884 * 26 15 14 28 28 C 1.38235 * 120.00130 * 179.76973 * 27 26 15 29 29 C 1.38237 * 119.99724 * 0.51137 * 28 27 26 30 30 C 1.38229 * 120.00095 * 359.74660 * 29 28 27 31 31 C 1.38231 * 120.00033 * 359.97438 * 30 29 28 32 32 H 1.08008 * 119.99659 * 359.97438 * 1 2 3 33 33 H 1.07995 * 120.00064 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46890 * 275.30947 * 3 2 1 35 35 H 1.08997 * 109.46690 * 35.30823 * 3 2 1 36 36 H 1.09002 * 109.47150 * 155.31101 * 3 2 1 37 37 H 1.09007 * 110.36931 * 159.34497 * 7 6 4 38 38 H 1.09003 * 110.36855 * 281.56394 * 7 6 4 39 39 H 1.08999 * 110.60776 * 217.51336 * 8 7 6 40 40 H 1.08994 * 110.55908 * 94.70111 * 8 7 6 41 41 H 0.97001 * 120.00093 * 359.73161 * 13 11 9 42 42 H 1.09005 * 109.47043 * 300.00213 * 14 13 11 43 43 H 1.08997 * 109.47046 * 60.00366 * 14 13 11 44 44 H 0.97000 * 119.99613 * 25.00267 * 17 15 14 45 45 H 0.96996 * 119.99940 * 179.97438 * 21 20 18 46 46 H 1.08001 * 119.99883 * 0.02562 * 27 26 15 47 47 H 1.07998 * 120.00218 * 180.23211 * 28 27 26 48 48 H 1.08003 * 119.99867 * 179.72582 * 29 28 27 49 49 H 1.07997 * 120.00187 * 179.97438 * 30 29 28 50 50 H 1.08001 * 120.00070 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3930 -2.1294 0.2433 6 8 3.1594 -1.2525 0.9397 7 6 4.0714 -2.2903 0.5187 8 6 4.0825 -2.2060 -1.0269 9 6 2.7311 -1.5412 -1.3723 10 1 2.1226 -2.2079 -1.9833 11 6 2.9536 -0.2314 -2.0835 12 8 3.9581 0.4129 -1.8676 13 7 2.0337 0.2267 -2.9555 14 6 2.2471 1.5030 -3.6424 15 6 1.0628 1.7882 -4.5682 16 1 1.0301 1.0377 -5.3580 17 7 -0.1821 1.7406 -3.7975 18 6 -1.3651 1.4534 -4.4245 19 1 -1.3804 1.2623 -5.4874 20 6 -2.5448 1.4089 -3.6943 21 7 -2.5264 1.6433 -2.3993 22 14 -4.1587 1.0177 -4.5498 23 1 -4.3845 -0.4498 -4.5337 24 1 -5.2722 1.6978 -3.8409 25 1 -4.1021 1.4944 -5.9552 26 6 1.2224 3.1556 -5.1811 27 6 0.8767 4.2818 -4.4579 28 6 1.0276 5.5364 -5.0183 29 6 1.5141 5.6643 -6.3059 30 6 1.8547 4.5378 -7.0310 31 6 1.7093 3.2836 -6.4685 32 1 -0.5400 0.9354 0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.1628 1.6673 -1.0232 35 1 1.5189 2.0391 0.5940 36 1 3.0539 1.1529 0.4293 37 1 5.0689 -2.1031 0.9165 38 1 3.7112 -3.2665 0.8435 39 1 4.1410 -3.2024 -1.4650 40 1 4.9114 -1.5873 -1.3705 41 1 1.2302 -0.2886 -3.1282 42 1 2.3328 2.3021 -2.9060 43 1 3.1636 1.4505 -4.2300 44 1 -0.1684 1.9127 -2.8430 45 1 -3.3508 1.6126 -1.8891 46 1 0.4927 4.1817 -3.4534 47 1 0.7610 6.4165 -4.4519 48 1 1.6278 6.6443 -6.7454 49 1 2.2345 4.6377 -8.0371 50 1 1.9751 2.4034 -7.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714840507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:20 Heat of formation + Delta-G solvation = -21.710732 kcal Electronic energy + Delta-G solvation = -31572.626923 eV Core-core repulsion = 27565.576085 eV Total energy + Delta-G solvation = -4007.050838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.57972 -38.99068 -38.10676 -35.85159 -34.76484 -33.49435 -32.26950 -31.83671 -30.42271 -29.56905 -28.83476 -27.34411 -26.79403 -24.14247 -23.32640 -22.78411 -22.00883 -21.67909 -20.06577 -19.81999 -18.48078 -17.38376 -16.94134 -16.38635 -16.22970 -15.76359 -15.54497 -15.20818 -14.93121 -14.67430 -14.54560 -14.17126 -13.70415 -13.59338 -13.35955 -12.99805 -12.89020 -12.84131 -12.68419 -12.41469 -12.22115 -12.12257 -11.98302 -11.75224 -11.41172 -11.15229 -11.07851 -11.03029 -10.97419 -10.84082 -10.72869 -10.58328 -10.46169 -10.16008 -9.85061 -9.79809 -9.40407 -9.08231 -8.70470 -8.54399 -8.41379 -8.19459 -7.13210 -5.87651 -3.18029 1.85411 1.91925 2.54476 2.94167 3.35513 3.43534 3.43674 3.54228 4.06999 4.29853 4.46784 4.49339 4.80509 4.90143 5.05568 5.15405 5.23737 5.31925 5.35019 5.37127 5.38661 5.41355 5.47294 5.55852 5.60118 5.67150 5.72371 5.76053 5.80006 5.84894 6.03224 6.06193 6.08529 6.15492 6.23682 6.29060 6.38528 6.44498 6.48552 6.60063 6.64373 6.82503 6.85091 6.93491 7.01748 7.07426 7.24922 7.27536 7.52043 7.62898 7.95852 8.28434 8.61310 9.42135 9.91624 10.29282 11.33119 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.004290 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.319680 B = 6524.545389 C = 8513.757738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.149 4.149 3 C -0.113 4.113 4 C 0.133 3.867 5 H 0.080 0.920 6 O -0.359 6.359 7 C 0.047 3.953 8 C -0.141 4.141 9 C -0.140 4.140 10 H 0.100 0.900 11 C 0.531 3.469 12 O -0.546 6.546 13 N -0.711 5.711 14 C 0.122 3.878 15 C 0.198 3.802 16 H 0.064 0.936 17 N -0.711 5.711 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.922 5.922 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.081 4.081 27 C -0.083 4.083 28 C -0.128 4.128 29 C -0.134 4.134 30 C -0.130 4.130 31 C -0.121 4.121 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.409 0.591 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.388 0.612 45 H 0.255 0.745 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.777 -4.451 0.271 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 C -0.169 4.169 4 C 0.075 3.925 5 H 0.097 0.903 6 O -0.277 6.277 7 C -0.030 4.030 8 C -0.179 4.179 9 C -0.162 4.162 10 H 0.119 0.881 11 C 0.317 3.683 12 O -0.424 6.424 13 N -0.362 5.362 14 C -0.003 4.003 15 C 0.087 3.913 16 H 0.082 0.918 17 N -0.352 5.352 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.199 4.199 21 N -0.570 5.570 22 Si 0.734 3.266 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.084 4.084 27 C -0.101 4.101 28 C -0.146 4.146 29 C -0.153 4.153 30 C -0.148 4.148 31 C -0.140 4.140 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.246 0.754 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.130 0.870 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.340 -3.893 0.510 12.001 hybrid contribution -1.668 -0.440 -0.631 1.837 sum 9.672 -4.332 -0.121 10.599 Atomic orbital electron populations 1.23800 0.94317 1.03041 0.96289 1.21309 0.94867 0.94244 1.04532 1.20893 0.99939 0.93624 1.02492 1.21818 0.88605 0.96373 0.85730 0.90274 1.89201 1.32666 1.54936 1.50921 1.23415 0.94776 0.91381 0.93457 1.22998 0.97130 1.01106 0.96696 1.22736 0.98840 0.96279 0.98317 0.88137 1.19893 0.82957 0.86758 0.78651 1.90658 1.28897 1.58859 1.63957 1.45965 1.23612 1.23245 1.43386 1.21567 0.97826 0.85494 0.95413 1.19471 0.86824 0.91685 0.93353 0.91834 1.42418 1.01242 1.83731 1.07825 1.19147 0.85023 1.40418 0.92828 0.91313 1.24657 0.97442 1.02168 0.95636 1.69630 1.26748 1.55335 1.05252 0.86278 0.84044 0.77724 0.78603 1.21801 1.21866 1.20903 1.20988 0.95896 0.97504 0.94054 1.20992 0.97088 0.91535 1.00474 1.21106 1.00407 0.97474 0.95607 1.20977 1.01219 0.97987 0.95091 1.20976 1.01588 0.92918 0.99337 1.21004 1.00523 0.96978 0.95445 0.86529 0.88963 0.90996 0.92656 0.91568 0.89068 0.92458 0.90297 0.88883 0.75441 0.91683 0.91737 0.77734 0.93501 0.85955 0.86894 0.87122 0.87044 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 13.92 29.02 0.40 -1.85 16 2 C -0.15 -2.37 4.33 -101.06 -0.44 -2.81 16 3 C -0.11 -1.92 8.17 36.01 0.29 -1.62 16 4 C 0.13 1.86 3.44 -27.11 -0.09 1.77 16 5 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 6 O -0.36 -5.32 10.53 -35.23 -0.37 -5.69 16 7 C 0.05 0.52 7.64 38.10 0.29 0.81 16 8 C -0.14 -1.59 6.62 -24.99 -0.17 -1.76 16 9 C -0.14 -1.82 3.41 -90.21 -0.31 -2.13 16 10 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 11 C 0.53 8.34 3.94 -10.99 -0.04 8.30 16 12 O -0.55 -10.05 14.32 5.56 0.08 -9.97 16 13 N -0.71 -11.05 4.76 -60.30 -0.29 -11.34 16 14 C 0.12 1.98 4.94 -4.04 -0.02 1.96 16 15 C 0.20 3.50 2.65 -69.09 -0.18 3.32 16 16 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 17 N -0.71 -15.14 3.79 -54.56 -0.21 -15.34 16 18 C -0.24 -5.97 9.92 -15.06 -0.15 -6.12 16 19 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 20 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 21 N -0.92 -24.55 13.06 55.49 0.72 -23.83 16 22 Si 0.90 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.08 -1.42 4.92 -104.62 -0.52 -1.93 16 27 C -0.08 -1.49 9.33 -39.58 -0.37 -1.86 16 28 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 29 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 30 C -0.13 -1.90 10.05 -39.59 -0.40 -2.29 16 31 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 32 H 0.12 2.15 8.05 -52.48 -0.42 1.73 16 33 H 0.09 1.40 7.91 -52.49 -0.42 0.98 16 34 H 0.07 1.30 4.40 -51.93 -0.23 1.07 16 35 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.07 1.18 7.17 -51.93 -0.37 0.81 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.20 6.90 -51.93 -0.36 0.85 16 41 H 0.41 6.50 8.14 -40.82 -0.33 6.17 16 42 H 0.06 1.15 6.91 -51.93 -0.36 0.79 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.39 8.88 7.80 -40.82 -0.32 8.56 16 45 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.12 2.37 7.71 -52.49 -0.40 1.96 16 47 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.11 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -28.30 403.86 -9.77 -38.07 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -7.80 Total: 19.51 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.97 Total: -13.48 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.23 Total: -50.51 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.29 Total: -15.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.30 -9.77 -38.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714840507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.359 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds