Wall clock time and date at job start Wed Apr 1 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 120.00132 * 2 1 4 4 C 1.50700 * 120.00119 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.33169 * 346.28613 * 4 2 1 6 6 O 1.44424 * 110.37358 * 223.92306 * 4 2 1 7 7 C 1.44427 * 105.27238 * 200.65711 * 6 4 2 8 8 C 1.54794 * 104.86035 * 40.46070 * 7 6 4 9 9 C 1.54474 * 110.37186 * 108.53798 * 4 2 1 10 10 H 1.09001 * 110.51133 * 261.59302 * 9 4 2 11 11 C 1.50696 * 110.51202 * 24.16792 * 9 4 2 12 12 O 1.21277 * 120.00113 * 85.99296 * 11 9 4 13 13 N 1.34778 * 119.99955 * 266.26216 * 11 9 4 14 14 C 1.46499 * 120.00228 * 179.72440 * 13 11 9 15 15 C 1.52999 * 109.47316 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.46992 * 294.99764 * 15 14 13 17 17 N 1.46498 * 109.47365 * 54.99834 * 15 14 13 18 18 C 1.36934 * 120.00471 * 205.00227 * 17 15 14 19 19 H 1.07999 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00279 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99885 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47100 * 89.99884 * 22 20 18 24 24 H 1.48495 * 109.47052 * 210.00127 * 22 20 18 25 25 H 1.48505 * 109.46865 * 330.00085 * 22 20 18 26 26 C 1.50697 * 109.46862 * 175.00160 * 15 14 13 27 27 C 1.38238 * 120.00080 * 279.71884 * 26 15 14 28 28 C 1.38235 * 120.00130 * 179.76973 * 27 26 15 29 29 C 1.38237 * 119.99724 * 0.51137 * 28 27 26 30 30 C 1.38229 * 120.00095 * 359.74660 * 29 28 27 31 31 C 1.38231 * 120.00033 * 359.97438 * 30 29 28 32 32 H 1.08008 * 119.99659 * 359.97438 * 1 2 3 33 33 H 1.07995 * 120.00064 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46890 * 275.30947 * 3 2 1 35 35 H 1.08997 * 109.46690 * 35.30823 * 3 2 1 36 36 H 1.09002 * 109.47150 * 155.31101 * 3 2 1 37 37 H 1.09007 * 110.36931 * 159.34497 * 7 6 4 38 38 H 1.09003 * 110.36855 * 281.56394 * 7 6 4 39 39 H 1.08999 * 110.60776 * 217.51336 * 8 7 6 40 40 H 1.08994 * 110.55908 * 94.70111 * 8 7 6 41 41 H 0.97001 * 120.00093 * 359.73161 * 13 11 9 42 42 H 1.09005 * 109.47043 * 300.00213 * 14 13 11 43 43 H 1.08997 * 109.47046 * 60.00366 * 14 13 11 44 44 H 0.97000 * 119.99613 * 25.00267 * 17 15 14 45 45 H 0.96996 * 119.99940 * 179.97438 * 21 20 18 46 46 H 1.08001 * 119.99883 * 0.02562 * 27 26 15 47 47 H 1.07998 * 120.00218 * 180.23211 * 28 27 26 48 48 H 1.08003 * 119.99867 * 179.72582 * 29 28 27 49 49 H 1.07997 * 120.00187 * 179.97438 * 30 29 28 50 50 H 1.08001 * 120.00070 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3930 -2.1294 0.2433 6 8 3.1594 -1.2525 0.9397 7 6 4.0714 -2.2903 0.5187 8 6 4.0825 -2.2060 -1.0269 9 6 2.7311 -1.5412 -1.3723 10 1 2.1226 -2.2079 -1.9833 11 6 2.9536 -0.2314 -2.0835 12 8 3.9581 0.4129 -1.8676 13 7 2.0337 0.2267 -2.9555 14 6 2.2471 1.5030 -3.6424 15 6 1.0628 1.7882 -4.5682 16 1 1.0301 1.0377 -5.3580 17 7 -0.1821 1.7406 -3.7975 18 6 -1.3651 1.4534 -4.4245 19 1 -1.3804 1.2623 -5.4874 20 6 -2.5448 1.4089 -3.6943 21 7 -2.5264 1.6433 -2.3993 22 14 -4.1587 1.0177 -4.5498 23 1 -4.3845 -0.4498 -4.5337 24 1 -5.2722 1.6978 -3.8409 25 1 -4.1021 1.4944 -5.9552 26 6 1.2224 3.1556 -5.1811 27 6 0.8767 4.2818 -4.4579 28 6 1.0276 5.5364 -5.0183 29 6 1.5141 5.6643 -6.3059 30 6 1.8547 4.5378 -7.0310 31 6 1.7093 3.2836 -6.4685 32 1 -0.5400 0.9354 0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.1628 1.6673 -1.0232 35 1 1.5189 2.0391 0.5940 36 1 3.0539 1.1529 0.4293 37 1 5.0689 -2.1031 0.9165 38 1 3.7112 -3.2665 0.8435 39 1 4.1410 -3.2024 -1.4650 40 1 4.9114 -1.5873 -1.3705 41 1 1.2302 -0.2886 -3.1282 42 1 2.3328 2.3021 -2.9060 43 1 3.1636 1.4505 -4.2300 44 1 -0.1684 1.9127 -2.8430 45 1 -3.3508 1.6126 -1.8891 46 1 0.4927 4.1817 -3.4534 47 1 0.7610 6.4165 -4.4519 48 1 1.6278 6.6443 -6.7454 49 1 2.2345 4.6377 -8.0371 50 1 1.9751 2.4034 -7.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714840507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:19 Heat of formation + Delta-G solvation = -37.447953 kcal Electronic energy + Delta-G solvation = -31573.309340 eV Core-core repulsion = 27565.576085 eV Total energy + Delta-G solvation = -4007.733256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.74420 -40.27145 -39.29520 -37.30877 -36.03039 -35.07455 -33.65366 -33.07753 -31.69058 -31.13436 -29.92478 -28.72327 -28.16214 -25.75567 -24.72725 -23.96888 -23.24263 -22.76001 -21.42726 -21.05184 -19.74441 -19.17341 -18.12034 -17.61851 -17.43187 -16.99974 -16.81450 -16.59495 -16.19320 -15.99344 -15.80237 -15.66939 -15.15415 -14.96783 -14.68877 -14.36102 -14.19424 -14.10187 -14.00863 -13.81670 -13.59645 -13.39780 -13.22239 -12.85436 -12.80044 -12.77101 -12.52017 -12.39504 -12.27309 -12.14523 -12.04406 -11.96764 -11.82064 -11.76753 -11.59525 -10.98346 -10.85849 -10.59202 -10.01546 -9.87405 -9.67106 -9.50540 -8.94719 -7.83685 -5.11975 0.59734 0.65567 1.25851 1.49798 1.53133 1.58173 1.69889 2.30790 2.60484 3.03261 3.06235 3.44566 3.49281 3.72798 3.80820 3.89384 4.04338 4.08962 4.13906 4.17976 4.22879 4.28781 4.32050 4.37584 4.38246 4.42684 4.44715 4.62520 4.72200 4.74672 4.80064 4.82700 4.87097 4.88296 4.92371 5.02877 5.10851 5.16585 5.18835 5.24883 5.31697 5.54840 5.62022 5.70287 5.71905 5.74296 5.79928 5.95576 5.99866 6.27189 6.34683 6.67704 7.34735 7.44512 8.11111 8.39799 9.36586 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.004290 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.319680 B = 6524.545389 C = 8513.757738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C -0.106 4.106 4 C 0.133 3.867 5 H 0.104 0.896 6 O -0.387 6.387 7 C 0.042 3.958 8 C -0.135 4.135 9 C -0.140 4.140 10 H 0.127 0.873 11 C 0.529 3.471 12 O -0.576 6.576 13 N -0.707 5.707 14 C 0.135 3.865 15 C 0.204 3.796 16 H 0.069 0.931 17 N -0.713 5.713 18 C -0.232 4.232 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.946 5.946 22 Si 0.954 3.046 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.282 1.282 26 C -0.099 4.099 27 C -0.109 4.109 28 C -0.138 4.138 29 C -0.132 4.132 30 C -0.127 4.127 31 C -0.127 4.127 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.409 0.591 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.378 0.622 45 H 0.247 0.753 46 H 0.095 0.905 47 H 0.126 0.874 48 H 0.143 0.857 49 H 0.146 0.854 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 -5.776 -1.577 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.146 4.146 3 C -0.163 4.163 4 C 0.075 3.925 5 H 0.121 0.879 6 O -0.306 6.306 7 C -0.034 4.034 8 C -0.173 4.173 9 C -0.161 4.161 10 H 0.145 0.855 11 C 0.317 3.683 12 O -0.456 6.456 13 N -0.358 5.358 14 C 0.010 3.990 15 C 0.094 3.906 16 H 0.087 0.913 17 N -0.353 5.353 18 C -0.363 4.363 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.596 5.596 22 Si 0.785 3.215 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.207 1.207 26 C -0.103 4.103 27 C -0.127 4.127 28 C -0.156 4.156 29 C -0.150 4.150 30 C -0.144 4.144 31 C -0.146 4.146 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.246 0.754 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.211 0.789 45 H 0.056 0.944 46 H 0.113 0.887 47 H 0.144 0.856 48 H 0.161 0.839 49 H 0.163 0.837 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.288 -5.227 -1.374 13.424 hybrid contribution -1.837 0.080 -0.113 1.842 sum 10.451 -5.148 -1.488 11.745 Atomic orbital electron populations 1.23655 0.94461 1.02482 0.97316 1.21388 0.94757 0.94841 1.03619 1.20781 0.99499 0.94604 1.01382 1.21893 0.88852 0.95511 0.86269 0.87868 1.89172 1.33441 1.56611 1.51386 1.23670 0.94704 0.91736 0.93312 1.23008 0.95045 1.02259 0.96986 1.22838 1.00475 0.95051 0.97741 0.85542 1.20430 0.82206 0.87529 0.78145 1.90643 1.30156 1.60051 1.64792 1.45944 1.23605 1.22781 1.43433 1.21359 0.97522 0.85424 0.94703 1.19518 0.85652 0.92219 0.93167 0.91336 1.42398 1.01744 1.83670 1.07459 1.19338 0.85986 1.38334 0.92689 0.91407 1.25190 0.99686 1.03571 0.96187 1.69762 1.26522 1.57200 1.06101 0.85456 0.81146 0.77347 0.77548 1.21483 1.23177 1.20736 1.20909 0.97499 0.96722 0.95155 1.20927 0.98915 0.93080 0.99790 1.21337 1.00477 0.97041 0.96710 1.21374 0.99681 0.99732 0.94219 1.21400 1.00228 0.92141 1.00679 1.21276 1.00078 0.98630 0.94622 0.89332 0.87344 0.92399 0.93008 0.92603 0.88356 0.89602 0.86860 0.90925 0.75436 0.93685 0.90864 0.78929 0.94364 0.88696 0.85590 0.83941 0.83659 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 13.92 67.78 0.94 -3.82 16 2 C -0.15 -4.68 4.33 -16.48 -0.07 -4.76 16 3 C -0.11 -3.78 8.17 71.24 0.58 -3.20 16 4 C 0.13 3.53 3.44 30.35 0.10 3.63 16 5 H 0.10 2.28 7.90 -2.39 -0.02 2.26 16 6 O -0.39 -11.01 10.53 -148.98 -1.57 -12.58 16 7 C 0.04 0.83 7.64 72.59 0.55 1.38 16 8 C -0.14 -2.71 6.62 31.72 0.21 -2.50 16 9 C -0.14 -3.38 3.41 -10.52 -0.04 -3.42 16 10 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 11 C 0.53 16.50 3.94 87.66 0.35 16.84 16 12 O -0.58 -21.55 14.32 -3.02 -0.04 -21.59 16 13 N -0.71 -22.10 4.76 -463.07 -2.20 -24.30 16 14 C 0.13 4.49 4.94 86.38 0.43 4.92 16 15 C 0.20 7.30 2.65 44.24 0.12 7.41 16 16 H 0.07 2.38 7.94 -2.39 -0.02 2.36 16 17 N -0.71 -31.11 3.79 -326.52 -1.24 -32.35 16 18 C -0.23 -11.45 9.92 84.03 0.83 -10.62 16 19 H 0.07 3.33 7.83 -2.91 -0.02 3.31 16 20 C -0.05 -2.72 5.50 84.86 0.47 -2.26 16 21 N -0.95 -51.80 13.06 21.65 0.28 -51.52 16 22 Si 0.95 43.53 29.55 68.60 2.03 45.56 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 C -0.10 -3.50 4.92 -19.87 -0.10 -3.59 16 27 C -0.11 -4.03 9.33 22.27 0.21 -3.82 16 28 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 29 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 30 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 31 C -0.13 -3.79 9.67 22.27 0.22 -3.57 16 32 H 0.09 3.48 8.05 -2.91 -0.02 3.45 16 33 H 0.11 3.24 7.91 -2.91 -0.02 3.22 16 34 H 0.06 2.22 4.40 -2.39 -0.01 2.21 16 35 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 36 H 0.05 2.08 7.17 -2.39 -0.02 2.06 16 37 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.79 6.90 -2.39 -0.02 1.77 16 41 H 0.41 12.92 8.14 -92.71 -0.75 12.16 16 42 H 0.04 1.69 6.91 -2.38 -0.02 1.67 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.38 18.10 7.80 -92.71 -0.72 17.38 16 45 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 46 H 0.09 3.96 7.71 -2.91 -0.02 3.94 16 47 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 48 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 49 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 50 H 0.13 3.35 8.04 -2.91 -0.02 3.33 16 Total: -1.00 -62.73 403.86 2.20 -60.53 By element: Atomic # 1 Polarization: 54.66 SS G_CDS: -0.53 Total: 54.13 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.47 Total: -17.88 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -3.16 Total: -108.17 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.61 Total: -34.17 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.73 2.20 -60.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714840507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.079 kcal (2) G-P(sol) polarization free energy of solvation -62.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds