Wall clock time and date at job start Wed Apr 1 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33001 * 119.99626 * 2 1 4 4 C 1.50704 * 119.99960 * 359.97438 * 3 2 1 5 5 C 1.47096 * 119.99888 * 179.97438 * 3 2 1 6 6 O 1.21611 * 120.00236 * 359.97438 * 5 3 2 7 7 N 1.34780 * 120.00027 * 179.97438 * 5 3 2 8 8 C 1.46495 * 120.00072 * 180.02562 * 7 5 3 9 9 C 1.50707 * 109.47014 * 179.97438 * 8 7 5 10 10 C 1.30998 * 119.99997 * 125.00317 * 9 8 7 11 11 C 1.50700 * 119.99850 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47207 * 124.99695 * 11 10 9 13 13 C 1.46904 * 110.99866 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47084 * 179.97438 * 13 12 11 15 15 C 1.38299 * 119.93274 * 269.72588 * 14 13 12 16 16 C 1.38096 * 120.07138 * 179.73176 * 15 14 13 17 17 C 1.38885 * 119.92820 * 0.55563 * 16 15 14 18 18 O 1.35751 * 120.06899 * 179.68762 * 17 16 15 19 19 C 1.34827 * 117.00264 * 174.49270 * 18 17 16 20 20 H 1.08005 * 119.99782 * 5.05689 * 19 18 17 21 21 C 1.38652 * 120.00272 * 185.05804 * 19 18 17 22 22 N 1.31554 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46988 * 59.99817 * 23 21 19 25 25 H 1.48499 * 109.46969 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46912 * 299.99841 * 23 21 19 27 27 C 1.38878 * 119.86094 * 359.72010 * 17 16 15 28 28 C 1.38097 * 119.93269 * 359.97438 * 27 17 16 29 29 H 1.08994 * 109.47296 * 299.99779 * 1 2 3 30 30 H 1.08997 * 109.47502 * 60.00685 * 1 2 3 31 31 H 1.09002 * 109.46576 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00445 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46909 * 270.00181 * 4 3 2 34 34 H 1.08998 * 109.47314 * 29.99888 * 4 3 2 35 35 H 1.09000 * 109.47200 * 150.00461 * 4 3 2 36 36 H 0.96999 * 119.99583 * 359.97438 * 7 5 3 37 37 H 1.08997 * 109.47364 * 299.99432 * 8 7 5 38 38 H 1.08994 * 109.47127 * 60.00149 * 8 7 5 39 39 H 1.08007 * 119.99834 * 304.99666 * 9 8 7 40 40 H 1.07993 * 120.00137 * 359.97438 * 10 9 8 41 41 H 1.09003 * 109.47212 * 244.99396 * 11 10 9 42 42 H 1.09004 * 109.47454 * 4.99053 * 11 10 9 43 43 H 1.00897 * 111.00106 * 303.94346 * 12 11 10 44 44 H 1.09005 * 109.46791 * 299.99639 * 13 12 11 45 45 H 1.09000 * 109.47233 * 59.99141 * 13 12 11 46 46 H 1.08000 * 119.96321 * 359.97361 * 15 14 13 47 47 H 1.08000 * 120.03912 * 180.27246 * 16 15 14 48 48 H 0.97001 * 119.99910 * 179.97438 * 22 21 19 49 49 H 1.08006 * 120.03347 * 179.97438 * 27 17 16 50 50 H 1.08003 * 119.96469 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4183 2.4569 -0.0006 5 6 3.6429 1.1519 0.0006 6 8 4.2510 0.0988 0.0015 7 7 4.3167 2.3192 0.0000 8 6 5.7817 2.3193 0.0000 9 6 6.2839 3.7402 -0.0012 10 6 7.1158 4.1417 0.9277 11 6 7.6175 5.5627 0.9267 12 7 7.3341 6.1830 2.2278 13 6 7.8099 7.5724 2.2634 14 6 7.5018 8.1745 3.6101 15 6 6.3010 8.8294 3.8148 16 6 6.0133 9.3773 5.0493 17 6 6.9363 9.2803 6.0825 18 8 6.6591 9.8235 7.2954 19 6 7.5457 9.5956 8.2852 20 1 8.4677 9.0739 8.0748 21 6 7.2739 10.0309 9.5733 22 7 6.1511 10.6668 9.8295 23 14 8.5026 9.7158 10.9446 24 1 9.7947 10.3672 10.6108 25 1 7.9793 10.2757 12.2165 26 1 8.7103 8.2532 11.0965 27 6 8.1436 8.6270 5.8722 28 6 8.4227 8.0756 4.6372 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 2.0471 -0.9353 0.0004 33 1 1.2370 2.7713 -1.0284 34 1 0.4657 2.3267 0.5129 35 1 2.0072 3.2168 0.5132 36 1 3.8316 3.1592 -0.0011 37 1 6.1451 1.8060 0.8903 38 1 6.1450 1.8051 -0.8897 39 1 5.9581 4.4274 -0.7681 40 1 7.4413 3.4546 1.6946 41 1 8.6928 5.5682 0.7482 42 1 7.1156 6.1248 0.1391 43 1 6.3503 6.1325 2.4458 44 1 8.8865 7.5922 2.0939 45 1 7.3090 8.1481 1.4851 46 1 5.5858 8.9089 3.0094 47 1 5.0736 9.8848 5.2098 48 1 5.9608 10.9711 10.7307 49 1 8.8636 8.5503 6.6736 50 1 9.3613 7.5671 4.4732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716280704.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:47 Heat of formation + Delta-G solvation = -15.188418 kcal Electronic energy + Delta-G solvation = -27307.522447 eV Core-core repulsion = 23300.754437 eV Total energy + Delta-G solvation = -4006.768010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.16151 -39.10217 -37.50425 -36.61615 -35.91545 -35.30420 -33.25344 -32.26427 -30.35313 -30.16517 -29.51793 -27.44113 -26.53411 -25.55980 -24.37179 -22.96667 -21.97654 -21.73534 -20.58315 -20.13270 -18.82742 -17.99230 -17.46336 -16.98471 -16.55246 -16.11233 -15.72877 -14.90790 -14.84508 -14.78808 -14.55707 -14.44340 -14.31163 -13.93274 -13.82690 -13.62174 -13.52567 -13.23436 -13.09361 -12.95181 -12.82699 -12.69384 -12.56184 -12.45727 -12.26011 -11.80627 -11.72101 -11.58620 -11.45119 -11.22539 -10.78424 -10.72423 -10.56804 -10.44890 -10.32391 -9.71421 -9.51215 -9.34377 -9.24786 -8.84165 -8.45291 -8.18300 -7.20162 -6.45969 -4.04818 0.98282 1.64492 2.20897 2.28764 2.94105 3.02930 3.12946 3.14264 3.16866 3.96231 4.14893 4.32099 4.46094 4.47822 4.65941 4.73166 4.74539 4.81079 5.01937 5.03262 5.09104 5.16136 5.19250 5.22804 5.24791 5.29700 5.33347 5.39550 5.40956 5.50122 5.51293 5.54007 5.72958 5.79517 5.87040 5.95866 6.04555 6.10429 6.19795 6.26752 6.36086 6.41606 6.68394 6.89076 6.95741 7.08053 7.16973 7.19043 7.36484 7.41417 7.44980 7.81630 7.89126 7.99085 8.99676 9.69328 10.71899 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.001533 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.368654 B =18257.231084 C =19524.975098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.119 4.119 5 C 0.553 3.447 6 O -0.547 6.547 7 N -0.723 5.723 8 C 0.152 3.848 9 C -0.189 4.189 10 C -0.113 4.113 11 C 0.082 3.918 12 N -0.682 5.682 13 C 0.119 3.881 14 C -0.188 4.188 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.235 4.235 28 C -0.048 4.048 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.343 0.657 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.270 0.730 49 H 0.126 0.874 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -14.935 -22.187 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.176 4.176 5 C 0.342 3.658 6 O -0.426 6.426 7 N -0.375 5.375 8 C 0.029 3.971 9 C -0.208 4.208 10 C -0.132 4.132 11 C -0.047 4.047 12 N -0.313 5.313 13 C -0.009 4.009 14 C -0.189 4.189 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.255 4.255 28 C -0.067 4.067 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.238 0.762 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.162 0.838 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.125 0.875 47 H 0.134 0.866 48 H 0.080 0.920 49 H 0.144 0.856 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.680 -15.657 -21.593 27.270 hybrid contribution -0.119 0.695 0.160 0.723 sum -5.799 -14.962 -21.432 26.774 Atomic orbital electron populations 1.21008 0.91991 1.03184 1.02707 1.23603 0.96364 0.97924 0.91284 1.21412 0.92519 0.96948 1.08846 1.20836 1.00310 0.93917 1.02504 1.18429 0.87864 0.83551 0.76006 1.90789 1.70174 1.31291 1.50347 1.45947 1.07236 1.08813 1.75475 1.20315 0.79490 0.94603 1.02708 1.22835 1.00854 0.96643 1.00495 1.23017 0.96118 0.97083 0.97005 1.21062 1.01212 0.91496 0.90930 1.60548 1.23657 1.18265 1.28838 1.20627 0.99818 0.86474 0.93996 1.19092 0.96963 1.07246 0.95585 1.20465 0.95594 0.97064 0.95591 1.20164 1.00088 1.08510 0.92583 1.19404 0.92496 0.90709 0.87200 1.83972 1.46666 1.62734 1.14705 1.21289 1.00054 1.39051 0.86461 0.89077 1.25288 0.97457 0.96258 0.97471 1.70028 1.22923 1.35158 1.21647 0.85782 0.79429 0.79025 0.79218 1.19484 1.20275 1.19470 1.21172 0.99027 1.06842 0.98437 1.20574 0.97736 0.96276 0.92085 0.90461 0.90681 0.91328 0.85612 0.90928 0.90715 0.91657 0.76194 0.90877 0.90774 0.86801 0.86264 0.90018 0.94987 0.83849 0.91088 0.95388 0.87540 0.86625 0.91964 0.85583 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.56 8.91 36.00 0.32 -0.24 16 2 C -0.07 -0.51 9.84 -36.13 -0.36 -0.87 16 3 C -0.19 -1.50 6.00 -102.84 -0.62 -2.12 16 4 C -0.12 -0.58 9.14 36.01 0.33 -0.25 16 5 C 0.55 5.73 7.75 -12.67 -0.10 5.63 16 6 O -0.55 -7.74 16.22 5.27 0.09 -7.65 16 7 N -0.72 -5.87 5.49 -62.68 -0.34 -6.21 16 8 C 0.15 1.26 6.11 -5.19 -0.03 1.23 16 9 C -0.19 -1.35 9.24 -36.02 -0.33 -1.68 16 10 C -0.11 -0.93 9.38 -36.03 -0.34 -1.27 16 11 C 0.08 0.73 6.12 -4.98 -0.03 0.70 16 12 N -0.68 -7.94 6.48 -116.33 -0.75 -8.70 16 13 C 0.12 1.51 5.81 -4.98 -0.03 1.48 16 14 C -0.19 -3.09 5.40 -104.58 -0.56 -3.65 16 15 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 16 C -0.19 -4.03 9.99 -39.39 -0.39 -4.43 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.18 -5.06 9.76 0.06 0.00 -5.06 16 19 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 20 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 23 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 27 C -0.24 -5.10 9.17 -39.40 -0.36 -5.46 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 29 H 0.08 0.29 7.40 -51.93 -0.38 -0.10 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.13 1.03 7.49 -52.49 -0.39 0.64 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.30 6.49 -51.93 -0.34 -0.03 16 35 H 0.06 0.29 6.71 -51.93 -0.35 -0.06 16 36 H 0.40 2.37 6.56 -40.82 -0.27 2.10 16 37 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.69 7.84 -52.48 -0.41 0.28 16 40 H 0.12 1.06 7.84 -52.49 -0.41 0.65 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.26 7.79 -51.93 -0.40 -0.14 16 43 H 0.34 4.01 8.71 -39.29 -0.34 3.67 16 44 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 48 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 49 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 50 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 421.16 15.07 6.35 6.35 Total: -1.00 -33.00 421.16 -9.89 -42.89 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.63 Total: 7.31 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -3.33 Total: -19.92 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.34 Total: -39.37 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.00 -9.89 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716280704.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.700 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds