Wall clock time and date at job start Wed Apr 1 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32994 * 119.99977 * 2 1 4 4 C 1.50697 * 119.99947 * 179.72342 * 3 2 1 5 5 C 1.47103 * 120.00056 * 359.72374 * 3 2 1 6 6 O 1.21618 * 120.00036 * 359.97438 * 5 3 2 7 7 N 1.34776 * 120.00165 * 179.97438 * 5 3 2 8 8 C 1.46503 * 119.99880 * 179.97438 * 7 5 3 9 9 C 1.50706 * 109.46844 * 180.02562 * 8 7 5 10 10 C 1.30994 * 120.00015 * 124.99796 * 9 8 7 11 11 C 1.50696 * 120.00084 * 179.97438 * 10 9 8 12 12 N 1.46903 * 109.47330 * 125.00275 * 11 10 9 13 13 C 1.46894 * 111.00055 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47174 * 179.97438 * 13 12 11 15 15 C 1.38305 * 119.93048 * 269.73105 * 14 13 12 16 16 C 1.38101 * 120.06576 * 179.71949 * 15 14 13 17 17 C 1.38883 * 119.92843 * 0.57481 * 16 15 14 18 18 O 1.35753 * 120.06358 * 179.67677 * 17 16 15 19 19 C 1.34829 * 116.99516 * 174.48808 * 18 17 16 20 20 H 1.07997 * 120.00264 * 5.05406 * 19 18 17 21 21 C 1.38652 * 119.99793 * 185.06010 * 19 18 17 22 22 N 1.31551 * 120.00341 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46844 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47075 * 119.99761 * 23 21 19 26 26 H 1.48496 * 109.47148 * 240.00077 * 23 21 19 27 27 C 1.38871 * 119.86403 * 359.70089 * 17 16 15 28 28 C 1.38102 * 119.93207 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47443 * 300.27783 * 1 2 3 30 30 H 1.09000 * 109.46911 * 60.27675 * 1 2 3 31 31 H 1.09001 * 109.47092 * 180.27138 * 1 2 3 32 32 H 1.07994 * 119.99935 * 179.72141 * 2 1 3 33 33 H 1.08999 * 109.47302 * 90.00331 * 4 3 2 34 34 H 1.09007 * 109.47041 * 209.99950 * 4 3 2 35 35 H 1.09000 * 109.47124 * 329.99757 * 4 3 2 36 36 H 0.97002 * 119.99987 * 0.02562 * 7 5 3 37 37 H 1.08999 * 109.47100 * 300.00128 * 8 7 5 38 38 H 1.09000 * 109.46873 * 60.00511 * 8 7 5 39 39 H 1.08004 * 119.99827 * 304.99872 * 9 8 7 40 40 H 1.08004 * 120.00158 * 0.02562 * 10 9 8 41 41 H 1.08999 * 109.47296 * 245.00400 * 11 10 9 42 42 H 1.09002 * 109.47343 * 5.00072 * 11 10 9 43 43 H 1.00896 * 110.99743 * 303.95965 * 12 11 10 44 44 H 1.08996 * 109.47376 * 300.00280 * 13 12 11 45 45 H 1.09007 * 109.46726 * 60.00413 * 13 12 11 46 46 H 1.08001 * 119.96727 * 359.97438 * 15 14 13 47 47 H 1.07995 * 120.03378 * 180.26805 * 16 15 14 48 48 H 0.97000 * 120.00353 * 180.02562 * 22 21 19 49 49 H 1.08006 * 120.03677 * 179.97438 * 27 17 16 50 50 H 1.08005 * 119.96933 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 0.0063 5 6 1.4365 2.4257 -0.0061 6 8 0.2203 2.4257 -0.0117 7 7 2.1103 3.5929 -0.0056 8 6 1.3778 4.8616 -0.0123 9 6 2.3571 6.0071 -0.0109 10 6 2.2924 6.9253 -0.9429 11 6 3.2713 8.0710 -0.9411 12 7 3.9559 8.1323 -2.2394 13 6 4.9197 9.2403 -2.2746 14 6 5.6011 9.2708 -3.6185 15 6 6.7706 8.5593 -3.8155 16 6 7.3943 8.5807 -5.0475 17 6 6.8523 9.3273 -6.0856 18 8 7.4667 9.3555 -7.2958 19 6 6.8294 10.0051 -8.2907 20 1 5.9149 10.5421 -8.0862 21 6 7.3480 9.9837 -9.5764 22 7 8.4620 9.3299 -9.8255 23 14 6.4647 10.8831 -10.9550 24 1 5.2433 11.5351 -10.4177 25 1 7.3651 11.9147 -11.5296 26 1 6.0830 9.9140 -12.0134 27 6 5.6810 10.0452 -5.8829 28 6 5.0584 10.0144 -4.6506 29 1 -0.3634 0.5181 0.8875 30 1 -0.3633 0.5095 -0.8925 31 1 -0.3633 -1.0277 0.0049 32 1 2.0470 -0.9353 0.0045 33 1 4.0466 1.1493 -1.0198 34 1 4.0401 2.0430 0.5195 35 1 4.0401 0.2630 0.5238 36 1 3.0803 3.5929 -0.0016 37 1 0.7555 4.9172 -0.9055 38 1 0.7468 4.9215 0.8745 39 1 3.1123 6.0710 0.7586 40 1 1.5370 6.8617 -1.7122 41 1 2.7371 9.0052 -0.7677 42 1 4.0057 7.9203 -0.1499 43 1 4.4054 7.2546 -2.4529 44 1 4.3965 10.1823 -2.1106 45 1 5.6656 9.0979 -1.4926 46 1 7.1943 7.9831 -3.0063 47 1 8.3051 8.0214 -5.2020 48 1 8.8251 9.3153 -10.7249 49 1 5.2573 10.6271 -6.6881 50 1 4.1472 10.5722 -4.4924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716280705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:52 Heat of formation + Delta-G solvation = -11.678895 kcal Electronic energy + Delta-G solvation = -27431.688730 eV Core-core repulsion = 23425.072904 eV Total energy + Delta-G solvation = -4006.615825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.25965 -39.10381 -37.51439 -36.63510 -35.55860 -35.15843 -33.31543 -32.27063 -30.62192 -30.18839 -29.72368 -27.50503 -25.66671 -25.27135 -24.41371 -23.09030 -22.07433 -21.96092 -20.63495 -20.30252 -19.26111 -17.99480 -16.99833 -16.67629 -16.62285 -15.91690 -15.74624 -14.90684 -14.85574 -14.62663 -14.54398 -14.48200 -14.21015 -14.03119 -13.65007 -13.57759 -13.50176 -13.21121 -13.12326 -12.97289 -12.87594 -12.69246 -12.47105 -12.33949 -12.23592 -11.86718 -11.81382 -11.58111 -11.44830 -11.24550 -10.80657 -10.69710 -10.55614 -10.42899 -10.03841 -9.68887 -9.49352 -9.33853 -9.16626 -8.85222 -8.45205 -8.18396 -7.20308 -6.46427 -4.05135 1.02508 1.64892 2.20716 2.28534 2.93326 3.05859 3.11636 3.13637 3.19058 3.95832 4.15058 4.33993 4.44053 4.47877 4.65969 4.74533 4.81437 4.95560 5.03666 5.09079 5.15818 5.22352 5.23630 5.27046 5.29782 5.33299 5.39551 5.48292 5.51117 5.52130 5.52707 5.72855 5.73248 5.79444 5.86978 6.00656 6.11291 6.17652 6.19796 6.26859 6.36585 6.41583 6.68304 6.88940 6.95769 7.08341 7.19091 7.19235 7.36586 7.41328 7.44964 7.81489 7.91270 7.98926 8.99514 9.69261 10.71630 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.001528 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.060610 B =18325.520500 C =19390.788892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.115 4.115 5 C 0.549 3.451 6 O -0.539 6.539 7 N -0.725 5.725 8 C 0.153 3.847 9 C -0.189 4.189 10 C -0.113 4.113 11 C 0.082 3.918 12 N -0.682 5.682 13 C 0.119 3.881 14 C -0.187 4.187 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.235 4.235 28 C -0.048 4.048 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.343 0.657 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.269 0.731 49 H 0.127 0.873 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 -12.311 22.184 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.087 4.087 3 C -0.203 4.203 4 C -0.172 4.172 5 C 0.339 3.661 6 O -0.418 6.418 7 N -0.377 5.377 8 C 0.030 3.970 9 C -0.208 4.208 10 C -0.133 4.133 11 C -0.047 4.047 12 N -0.313 5.313 13 C -0.009 4.009 14 C -0.189 4.189 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.255 4.255 28 C -0.067 4.067 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.162 0.838 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.125 0.875 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.995 -12.039 21.595 27.480 hybrid contribution 0.825 0.170 -0.167 0.858 sum -11.170 -11.870 21.428 26.922 Atomic orbital electron populations 1.21040 0.91697 1.01042 1.04156 1.23659 0.97301 0.96704 0.91037 1.21455 0.96451 0.93084 1.09278 1.20776 0.90806 1.02879 1.02739 1.18439 0.87249 0.84102 0.76354 1.90791 1.13576 1.87598 1.49865 1.45975 1.10589 1.05423 1.75712 1.20298 0.93359 0.80746 1.02621 1.22837 1.01094 0.96449 1.00437 1.23012 0.98326 0.94883 0.97029 1.21060 0.95109 0.97579 0.90945 1.60528 1.33581 1.08065 1.29159 1.20626 0.92158 0.94116 0.94004 1.19096 0.98273 1.05910 0.95579 1.20470 0.94780 0.97851 0.95626 1.20166 1.03237 1.05370 0.92552 1.19403 0.90790 0.92373 0.87234 1.83976 1.43262 1.66210 1.14695 1.21388 1.08668 1.30365 0.86334 0.88962 1.25293 0.96405 0.97309 0.97519 1.70044 1.18789 1.39232 1.21680 0.85646 0.78995 0.78798 0.79992 1.19064 1.20144 1.20129 1.21175 0.99129 1.06673 0.98485 1.20575 0.97410 0.96630 0.92071 0.90130 0.90045 0.92958 0.85772 0.90849 0.91799 0.91097 0.76290 0.90948 0.90829 0.86843 0.86281 0.90030 0.94999 0.83835 0.91087 0.95393 0.87533 0.86621 0.92066 0.85571 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.45 36.01 0.30 -0.67 16 2 C -0.07 -0.47 9.95 -36.13 -0.36 -0.83 16 3 C -0.20 -1.51 6.00 -102.85 -0.62 -2.13 16 4 C -0.12 -0.57 9.61 36.00 0.35 -0.23 16 5 C 0.55 5.41 7.72 -12.66 -0.10 5.31 16 6 O -0.54 -6.90 13.07 5.26 0.07 -6.83 16 7 N -0.72 -5.72 5.49 -62.67 -0.34 -6.06 16 8 C 0.15 1.23 6.11 -5.19 -0.03 1.20 16 9 C -0.19 -1.33 9.24 -36.02 -0.33 -1.66 16 10 C -0.11 -0.93 9.38 -36.03 -0.34 -1.26 16 11 C 0.08 0.73 6.12 -4.98 -0.03 0.70 16 12 N -0.68 -7.94 6.48 -116.34 -0.75 -8.69 16 13 C 0.12 1.51 5.81 -4.98 -0.03 1.48 16 14 C -0.19 -3.08 5.40 -104.57 -0.56 -3.65 16 15 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 16 C -0.19 -4.03 9.99 -39.39 -0.39 -4.42 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.18 -5.08 9.76 0.04 0.00 -5.08 16 19 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 20 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 23 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.24 -5.10 9.17 -39.40 -0.36 -5.46 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 29 H 0.08 0.74 7.22 -51.93 -0.37 0.36 16 30 H 0.08 0.78 7.22 -51.93 -0.37 0.41 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.26 6.70 -51.93 -0.35 -0.09 16 35 H 0.07 0.27 8.07 -51.93 -0.42 -0.14 16 36 H 0.40 2.35 6.56 -40.82 -0.27 2.09 16 37 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.69 7.84 -52.48 -0.41 0.28 16 40 H 0.12 1.05 7.84 -52.48 -0.41 0.64 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.26 7.79 -51.93 -0.40 -0.14 16 43 H 0.34 4.01 8.72 -39.29 -0.34 3.67 16 44 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 45 H 0.03 0.33 8.08 -51.92 -0.42 -0.09 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 48 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 50 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 419.18 15.07 6.32 6.32 Total: -1.00 -32.24 419.18 -10.00 -42.24 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.69 Total: 7.69 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -3.34 Total: -20.60 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.34 Total: -39.22 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.24 -10.00 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716280705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.563 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds