Wall clock time and date at job start Wed Apr 1 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32994 * 119.99977 * 2 1 4 4 C 1.50697 * 119.99947 * 179.72342 * 3 2 1 5 5 C 1.47103 * 120.00056 * 359.72374 * 3 2 1 6 6 O 1.21618 * 120.00036 * 359.97438 * 5 3 2 7 7 N 1.34776 * 120.00165 * 179.97438 * 5 3 2 8 8 C 1.46503 * 119.99880 * 179.97438 * 7 5 3 9 9 C 1.50706 * 109.46844 * 180.02562 * 8 7 5 10 10 C 1.30994 * 120.00015 * 124.99796 * 9 8 7 11 11 C 1.50696 * 120.00084 * 179.97438 * 10 9 8 12 12 N 1.46903 * 109.47330 * 125.00275 * 11 10 9 13 13 C 1.46894 * 111.00055 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47174 * 179.97438 * 13 12 11 15 15 C 1.38305 * 119.93048 * 269.73105 * 14 13 12 16 16 C 1.38101 * 120.06576 * 179.71949 * 15 14 13 17 17 C 1.38883 * 119.92843 * 0.57481 * 16 15 14 18 18 O 1.35753 * 120.06358 * 179.67677 * 17 16 15 19 19 C 1.34829 * 116.99516 * 174.48808 * 18 17 16 20 20 H 1.07997 * 120.00264 * 5.05406 * 19 18 17 21 21 C 1.38652 * 119.99793 * 185.06010 * 19 18 17 22 22 N 1.31551 * 120.00341 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46844 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47075 * 119.99761 * 23 21 19 26 26 H 1.48496 * 109.47148 * 240.00077 * 23 21 19 27 27 C 1.38871 * 119.86403 * 359.70089 * 17 16 15 28 28 C 1.38102 * 119.93207 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47443 * 300.27783 * 1 2 3 30 30 H 1.09000 * 109.46911 * 60.27675 * 1 2 3 31 31 H 1.09001 * 109.47092 * 180.27138 * 1 2 3 32 32 H 1.07994 * 119.99935 * 179.72141 * 2 1 3 33 33 H 1.08999 * 109.47302 * 90.00331 * 4 3 2 34 34 H 1.09007 * 109.47041 * 209.99950 * 4 3 2 35 35 H 1.09000 * 109.47124 * 329.99757 * 4 3 2 36 36 H 0.97002 * 119.99987 * 0.02562 * 7 5 3 37 37 H 1.08999 * 109.47100 * 300.00128 * 8 7 5 38 38 H 1.09000 * 109.46873 * 60.00511 * 8 7 5 39 39 H 1.08004 * 119.99827 * 304.99872 * 9 8 7 40 40 H 1.08004 * 120.00158 * 0.02562 * 10 9 8 41 41 H 1.08999 * 109.47296 * 245.00400 * 11 10 9 42 42 H 1.09002 * 109.47343 * 5.00072 * 11 10 9 43 43 H 1.00896 * 110.99743 * 303.95965 * 12 11 10 44 44 H 1.08996 * 109.47376 * 300.00280 * 13 12 11 45 45 H 1.09007 * 109.46726 * 60.00413 * 13 12 11 46 46 H 1.08001 * 119.96727 * 359.97438 * 15 14 13 47 47 H 1.07995 * 120.03378 * 180.26805 * 16 15 14 48 48 H 0.97000 * 120.00353 * 180.02562 * 22 21 19 49 49 H 1.08006 * 120.03677 * 179.97438 * 27 17 16 50 50 H 1.08005 * 119.96933 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 0.0063 5 6 1.4365 2.4257 -0.0061 6 8 0.2203 2.4257 -0.0117 7 7 2.1103 3.5929 -0.0056 8 6 1.3778 4.8616 -0.0123 9 6 2.3571 6.0071 -0.0109 10 6 2.2924 6.9253 -0.9429 11 6 3.2713 8.0710 -0.9411 12 7 3.9559 8.1323 -2.2394 13 6 4.9197 9.2403 -2.2746 14 6 5.6011 9.2708 -3.6185 15 6 6.7706 8.5593 -3.8155 16 6 7.3943 8.5807 -5.0475 17 6 6.8523 9.3273 -6.0856 18 8 7.4667 9.3555 -7.2958 19 6 6.8294 10.0051 -8.2907 20 1 5.9149 10.5421 -8.0862 21 6 7.3480 9.9837 -9.5764 22 7 8.4620 9.3299 -9.8255 23 14 6.4647 10.8831 -10.9550 24 1 5.2433 11.5351 -10.4177 25 1 7.3651 11.9147 -11.5296 26 1 6.0830 9.9140 -12.0134 27 6 5.6810 10.0452 -5.8829 28 6 5.0584 10.0144 -4.6506 29 1 -0.3634 0.5181 0.8875 30 1 -0.3633 0.5095 -0.8925 31 1 -0.3633 -1.0277 0.0049 32 1 2.0470 -0.9353 0.0045 33 1 4.0466 1.1493 -1.0198 34 1 4.0401 2.0430 0.5195 35 1 4.0401 0.2630 0.5238 36 1 3.0803 3.5929 -0.0016 37 1 0.7555 4.9172 -0.9055 38 1 0.7468 4.9215 0.8745 39 1 3.1123 6.0710 0.7586 40 1 1.5370 6.8617 -1.7122 41 1 2.7371 9.0052 -0.7677 42 1 4.0057 7.9203 -0.1499 43 1 4.4054 7.2546 -2.4529 44 1 4.3965 10.1823 -2.1106 45 1 5.6656 9.0979 -1.4926 46 1 7.1943 7.9831 -3.0063 47 1 8.3051 8.0214 -5.2020 48 1 8.8251 9.3153 -10.7249 49 1 5.2573 10.6271 -6.6881 50 1 4.1472 10.5722 -4.4924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716280705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:50 Heat of formation + Delta-G solvation = -32.594670 kcal Electronic energy + Delta-G solvation = -27432.595706 eV Core-core repulsion = 23425.072904 eV Total energy + Delta-G solvation = -4007.522801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.97773 -40.77719 -38.78187 -37.69729 -36.41510 -35.85708 -34.42840 -33.95119 -31.78500 -31.45623 -30.70777 -28.45049 -27.41811 -25.97857 -25.43110 -23.97355 -23.59078 -22.73210 -21.99891 -21.09448 -19.92149 -19.81259 -18.81975 -17.47668 -17.33086 -16.75460 -16.53414 -16.40567 -16.14329 -15.84366 -15.71306 -15.42659 -15.25655 -15.15545 -14.92507 -14.64951 -14.52049 -14.26800 -14.05422 -13.99394 -13.68591 -13.56913 -13.49291 -13.43611 -13.11722 -12.90504 -12.84992 -12.71257 -12.42917 -12.35783 -12.32339 -12.13500 -12.09954 -11.84839 -11.15970 -10.80216 -10.74712 -10.38480 -10.11043 -9.78055 -9.75625 -9.32004 -8.88731 -8.47277 -6.15165 0.42481 0.62374 0.67754 1.06054 1.34959 1.43079 1.53093 2.17622 2.24395 2.42688 2.80505 3.12905 3.51322 3.53810 3.78177 3.84701 3.95017 4.05176 4.08612 4.12679 4.22187 4.36977 4.39924 4.47029 4.52282 4.57780 4.63299 4.67153 4.73261 4.77937 4.82396 4.84114 4.85327 4.88030 4.88552 5.02185 5.11356 5.17418 5.24329 5.32434 5.37553 5.52750 5.57817 5.63776 5.65222 5.73310 5.74300 5.83796 6.03774 6.12626 6.27183 6.50998 6.56138 6.97882 7.22640 7.78988 8.76170 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.001528 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.060610 B =18325.520500 C =19390.788892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.067 4.067 3 C -0.210 4.210 4 C -0.112 4.112 5 C 0.538 3.462 6 O -0.578 6.578 7 N -0.715 5.715 8 C 0.152 3.848 9 C -0.168 4.168 10 C -0.124 4.124 11 C 0.088 3.912 12 N -0.695 5.695 13 C 0.123 3.877 14 C -0.159 4.159 15 C -0.058 4.058 16 C -0.205 4.205 17 C 0.112 3.888 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.246 4.246 28 C -0.051 4.051 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.413 0.587 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.344 0.656 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.149 0.851 47 H 0.113 0.887 48 H 0.272 0.728 49 H 0.115 0.885 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 -12.543 25.093 30.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.086 4.086 3 C -0.213 4.213 4 C -0.169 4.169 5 C 0.328 3.672 6 O -0.461 6.461 7 N -0.368 5.368 8 C 0.029 3.971 9 C -0.187 4.187 10 C -0.143 4.143 11 C -0.040 4.040 12 N -0.327 5.327 13 C -0.005 4.005 14 C -0.160 4.160 15 C -0.077 4.077 16 C -0.224 4.224 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.265 4.265 28 C -0.070 4.070 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.251 0.749 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.162 0.838 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.167 0.833 47 H 0.131 0.869 48 H 0.081 0.919 49 H 0.133 0.867 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.706 -12.261 24.572 30.258 hybrid contribution 0.896 0.152 -0.663 1.125 sum -11.810 -12.109 23.909 29.288 Atomic orbital electron populations 1.20964 0.92881 1.01664 1.02258 1.23934 0.96682 0.97877 0.90144 1.21645 0.97901 0.92035 1.09724 1.20810 0.88636 1.04160 1.03249 1.18972 0.87046 0.85347 0.75803 1.90775 1.15291 1.88213 1.51772 1.45917 1.11175 1.04915 1.74755 1.20255 0.93698 0.81414 1.01756 1.22809 1.00521 0.95085 1.00271 1.22895 0.98543 0.95440 0.97442 1.21041 0.95197 0.97851 0.89933 1.60432 1.33252 1.07710 1.31284 1.20616 0.92936 0.95304 0.91642 1.19656 0.97101 1.02406 0.96840 1.20910 0.94432 0.97322 0.95004 1.20458 1.03547 1.05064 0.93372 1.19976 0.92436 0.94497 0.86883 1.83937 1.45240 1.68574 1.16310 1.21844 1.09179 1.30775 0.87082 0.88241 1.26567 0.97226 0.98209 1.00025 1.70182 1.21118 1.42096 1.22487 0.84540 0.78084 0.77557 0.76091 1.17593 1.19224 1.19375 1.21257 0.98806 1.06569 0.99870 1.20916 0.98074 0.96941 0.91028 0.91895 0.92304 0.90939 0.82788 0.90615 0.90843 0.89566 0.74910 0.92540 0.91161 0.84863 0.87502 0.89704 0.93210 0.83802 0.89924 0.93052 0.83302 0.86913 0.91856 0.86748 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.45 71.24 0.60 -1.30 16 2 C -0.07 -0.83 9.95 24.52 0.24 -0.59 16 3 C -0.21 -2.88 6.00 -18.70 -0.11 -2.99 16 4 C -0.11 -0.82 9.61 71.24 0.68 -0.13 16 5 C 0.54 10.36 7.72 86.57 0.67 11.03 16 6 O -0.58 -15.28 13.07 -4.09 -0.05 -15.34 16 7 N -0.72 -10.31 5.49 -470.43 -2.58 -12.89 16 8 C 0.15 2.28 6.11 85.63 0.52 2.80 16 9 C -0.17 -1.89 9.24 25.65 0.24 -1.65 16 10 C -0.12 -1.69 9.38 25.65 0.24 -1.45 16 11 C 0.09 1.21 6.12 85.56 0.52 1.73 16 12 N -0.70 -13.27 6.48 -521.98 -3.38 -16.65 16 13 C 0.12 2.50 5.81 85.56 0.50 3.00 16 14 C -0.16 -4.67 5.40 -19.83 -0.11 -4.77 16 15 C -0.06 -1.83 9.69 22.25 0.22 -1.61 16 16 C -0.21 -8.55 9.99 22.39 0.22 -8.33 16 17 C 0.11 5.61 6.65 22.58 0.15 5.76 16 18 O -0.23 -14.20 9.76 -22.77 -0.22 -14.43 16 19 C -0.41 -24.30 9.49 67.92 0.64 -23.66 16 20 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.78 13.67 21.61 0.30 -56.48 16 23 Si 1.02 43.29 29.55 68.60 2.03 45.31 16 24 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 C -0.25 -10.80 9.17 22.39 0.21 -10.59 16 28 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 29 H 0.06 1.20 7.22 -2.39 -0.02 1.19 16 30 H 0.06 1.19 7.22 -2.39 -0.02 1.17 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.38 6.70 -2.38 -0.02 0.36 16 35 H 0.09 0.39 8.07 -2.39 -0.02 0.37 16 36 H 0.41 3.86 6.56 -92.71 -0.61 3.25 16 37 H 0.06 1.04 7.79 -2.39 -0.02 1.02 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.13 1.04 7.84 -2.91 -0.02 1.02 16 40 H 0.11 1.74 7.84 -2.91 -0.02 1.72 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 0.54 7.79 -2.39 -0.02 0.52 16 43 H 0.34 6.60 8.72 -89.70 -0.78 5.82 16 44 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 45 H 0.05 0.87 8.08 -2.38 -0.02 0.85 16 46 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 47 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 48 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 50 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -76.76 419.18 1.77 -74.99 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.43 Total: 30.63 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 6.12 Total: -35.15 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -5.67 Total: -86.03 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.28 Total: -29.76 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.76 1.77 -74.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716280705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.400 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds