Wall clock time and date at job start Wed Apr 1 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46930 * 2 1 4 4 C 1.52996 * 109.47453 * 239.99770 * 2 1 3 5 5 C 1.50703 * 109.46916 * 59.99920 * 4 2 1 6 6 O 1.21278 * 120.00413 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99700 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00075 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.88385 * 31.48438 * 8 7 5 10 10 C 1.54493 * 110.91005 * 267.94125 * 8 7 5 11 11 C 1.51369 * 105.21602 * 215.53985 * 10 8 7 12 12 C 1.38489 * 130.38762 * 197.10407 * 11 10 8 13 13 C 1.38107 * 120.21644 * 180.02562 * 12 11 10 14 14 C 1.38260 * 119.93318 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93139 * 359.97438 * 14 13 12 16 16 C 1.38217 * 109.75886 * 17.12420 * 11 10 8 17 17 C 1.51374 * 109.75935 * 359.97438 * 16 11 10 18 18 H 1.08991 * 110.30314 * 101.84603 * 17 16 11 19 19 N 1.46505 * 110.30272 * 223.89693 * 17 16 11 20 20 C 1.36931 * 119.99788 * 272.22380 * 19 17 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 17 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.53004 * 109.46788 * 119.99752 * 2 1 3 29 29 C 1.53003 * 117.49895 * 13.62551 * 28 2 1 30 30 C 1.52995 * 117.49916 * 305.00294 * 28 2 1 31 31 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47176 * 300.00350 * 1 2 3 33 33 H 1.09001 * 109.47007 * 60.00172 * 1 2 3 34 34 H 0.96708 * 113.99593 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47234 * 300.00578 * 4 2 1 36 36 H 1.09001 * 109.47230 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00665 * 0.02562 * 7 5 4 38 38 H 1.09001 * 110.34113 * 96.56960 * 10 8 7 39 39 H 1.08996 * 110.21814 * 334.44601 * 10 8 7 40 40 H 1.08001 * 119.89417 * 0.02562 * 12 11 10 41 41 H 1.07997 * 120.03368 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.03087 * 179.97438 * 14 13 12 43 43 H 1.08006 * 119.89177 * 180.02562 * 15 14 13 44 44 H 0.97000 * 119.99792 * 92.22174 * 19 17 16 45 45 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 46 46 H 1.08999 * 115.54671 * 159.33279 * 28 2 1 47 47 H 1.08995 * 117.49725 * 359.97438 * 29 28 2 48 48 H 1.08998 * 117.49528 * 145.01870 * 29 28 2 49 49 H 1.09008 * 117.49949 * 214.98022 * 30 28 2 50 50 H 1.09001 * 117.49887 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8630 -0.4717 -3.7037 8 6 1.3752 0.2192 -4.9000 9 1 1.2713 1.2885 -4.7159 10 6 0.0378 -0.3872 -5.3800 11 6 0.0878 -0.3134 -6.8911 12 6 -0.9270 -0.4119 -7.8284 13 6 -0.6406 -0.3132 -9.1758 14 6 0.6633 -0.1159 -9.5913 15 6 1.6765 -0.0173 -8.6581 16 6 1.3911 -0.1155 -7.3064 17 6 2.3062 -0.0422 -6.1028 18 1 2.8360 -0.9857 -5.9725 19 7 3.2606 1.0587 -6.2561 20 6 4.4493 0.8492 -6.9026 21 1 4.6832 -0.1275 -7.2999 22 6 5.3511 1.8938 -7.0529 23 7 6.4914 1.6938 -7.6790 24 14 4.9464 3.5832 -6.3664 25 1 5.4445 3.6828 -4.9709 26 1 5.5977 4.6253 -7.2001 27 1 3.4751 3.7846 -6.3824 28 6 2.0399 -0.7212 1.2493 29 6 1.0318 -1.5509 2.0470 30 6 1.5414 -0.2212 2.6066 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.9704 1.4236 0.0004 35 1 1.6767 -1.7490 -1.2492 36 1 3.1301 -0.7208 -1.2493 37 1 2.4201 -1.2608 -3.7927 38 1 -0.8009 0.1964 -5.0004 39 1 -0.0440 -1.4243 -5.0546 40 1 -1.9457 -0.5665 -7.5046 41 1 -1.4341 -0.3909 -9.9042 42 1 0.8891 -0.0388 -10.6446 43 1 2.6947 0.1372 -8.9834 44 1 3.0503 1.9360 -5.8996 45 1 7.1218 2.4235 -7.7838 46 1 3.0641 -1.0901 1.1940 47 1 0.0053 -1.5826 1.6820 48 1 1.3927 -2.4659 2.5166 49 1 2.2376 -0.2615 3.4445 50 1 0.8505 0.6218 2.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717360162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:29 Heat of formation + Delta-G solvation = -13.930460 kcal Electronic energy + Delta-G solvation = -30545.503614 eV Core-core repulsion = 26538.790154 eV Total energy + Delta-G solvation = -4006.713461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.46843 -39.72672 -38.40459 -36.24051 -35.47781 -34.07830 -32.85727 -31.69104 -31.35952 -30.04493 -28.63578 -27.22713 -26.29338 -24.29848 -22.73307 -22.63488 -22.07824 -20.75419 -20.49699 -19.92498 -19.72790 -17.84139 -17.38773 -16.54274 -16.27164 -15.94876 -15.62691 -15.38088 -15.18574 -14.62370 -14.49473 -14.26463 -14.01909 -13.69042 -13.35325 -13.18545 -12.95461 -12.86113 -12.66844 -12.59467 -12.46976 -12.29091 -12.07503 -11.89261 -11.74824 -11.39013 -11.16637 -11.06243 -11.01194 -10.87000 -10.74915 -10.63808 -10.42729 -10.41394 -10.19266 -10.08009 -9.65566 -9.45751 -9.09140 -8.82446 -8.36283 -8.15380 -7.39703 -5.85792 -3.22385 1.74569 1.84535 2.79329 3.19946 3.35673 3.41054 3.44192 3.47579 4.17506 4.27389 4.32962 4.48840 4.53512 4.66982 4.71819 4.75843 4.86933 4.94161 5.08234 5.15009 5.28522 5.29970 5.32191 5.36323 5.38865 5.46595 5.49425 5.55924 5.63010 5.65601 5.66211 5.73417 5.81421 5.86734 5.89335 5.97856 6.02610 6.06695 6.19003 6.25626 6.39483 6.43274 6.57639 6.72598 6.85945 6.98029 7.18281 7.44895 7.66186 7.69093 7.87650 8.32086 8.42195 9.09040 9.82272 10.00814 11.31567 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.003409 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.723362 B = 8210.812235 C =10368.916337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 O -0.538 6.538 4 C -0.168 4.168 5 C 0.514 3.486 6 O -0.520 6.520 7 N -0.716 5.716 8 C 0.139 3.861 9 H 0.101 0.899 10 C -0.085 4.085 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.130 4.130 14 C -0.129 4.129 15 C -0.079 4.079 16 C -0.095 4.095 17 C 0.213 3.787 18 H 0.075 0.925 19 N -0.736 5.736 20 C -0.248 4.248 21 H 0.092 0.908 22 C 0.012 3.988 23 N -0.929 5.929 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C -0.189 4.189 29 C -0.178 4.178 30 C -0.165 4.165 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.370 0.630 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.401 0.599 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.132 0.868 44 H 0.365 0.635 45 H 0.261 0.739 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -9.540 13.286 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 O -0.342 6.342 4 C -0.208 4.208 5 C 0.301 3.699 6 O -0.396 6.396 7 N -0.367 5.367 8 C 0.033 3.967 9 H 0.119 0.881 10 C -0.124 4.124 11 C -0.107 4.107 12 C -0.135 4.135 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.097 4.097 16 C -0.098 4.098 17 C 0.102 3.898 18 H 0.093 0.907 19 N -0.378 5.378 20 C -0.378 4.378 21 H 0.110 0.890 22 C -0.184 4.184 23 N -0.576 5.576 24 Si 0.710 3.290 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.208 4.208 29 C -0.215 4.215 30 C -0.202 4.202 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.217 0.783 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.198 0.802 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.784 -8.763 13.267 21.043 hybrid contribution 0.878 0.657 0.190 1.113 sum -12.906 -8.106 13.457 20.331 Atomic orbital electron populations 1.22103 0.92545 1.01758 1.04759 1.20244 0.94996 0.81698 0.88987 1.86708 1.25948 1.24852 1.96693 1.22422 1.03060 1.01445 0.93910 1.20385 0.80534 0.84725 0.84306 1.90676 1.37201 1.25474 1.86227 1.45927 1.53653 1.31870 1.05206 1.21887 0.92503 0.97971 0.84354 0.88101 1.21357 0.98310 1.01397 0.91353 1.20439 0.94211 1.01189 0.94872 1.20456 0.97945 1.02488 0.92567 1.20903 0.96547 1.02115 0.95240 1.21076 0.92953 1.01387 0.99268 1.20873 1.00141 0.96894 0.91778 1.21556 0.95231 0.97282 0.95756 1.19903 0.88318 0.93470 0.88109 0.90705 1.42784 1.18035 1.07858 1.69081 1.19012 0.91677 0.97901 1.29176 0.89040 1.24628 0.96263 0.97498 1.00029 1.69691 1.09309 1.32030 1.46551 0.86627 0.77864 0.85659 0.78876 1.20992 1.21650 1.20187 1.23073 0.99481 1.04714 0.93485 1.23116 0.99581 0.95103 1.03701 1.22862 1.03729 0.97905 0.95730 0.91813 0.92358 0.88796 0.78350 0.88172 0.88576 0.76492 0.90768 0.90255 0.87096 0.86703 0.86474 0.85028 0.80176 0.92936 0.87706 0.87948 0.88918 0.88967 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 7.18 37.16 0.27 -1.44 16 2 C 0.18 1.90 0.80 -90.62 -0.07 1.82 16 3 O -0.54 -6.91 11.85 -53.50 -0.63 -7.54 16 4 C -0.17 -1.63 4.95 -27.88 -0.14 -1.77 16 5 C 0.51 6.98 7.39 -10.99 -0.08 6.90 16 6 O -0.52 -8.98 12.61 -12.70 -0.16 -9.14 16 7 N -0.72 -9.44 5.14 -52.37 -0.27 -9.71 16 8 C 0.14 2.20 3.13 -66.45 -0.21 1.99 16 9 H 0.10 1.87 7.22 -51.93 -0.37 1.49 16 10 C -0.09 -1.20 6.50 -26.77 -0.17 -1.38 16 11 C -0.11 -1.67 6.14 -104.21 -0.64 -2.31 16 12 C -0.12 -1.67 10.04 -39.54 -0.40 -2.07 16 13 C -0.13 -1.83 10.05 -39.62 -0.40 -2.23 16 14 C -0.13 -2.01 10.05 -39.62 -0.40 -2.41 16 15 C -0.08 -1.45 9.97 -39.54 -0.39 -1.84 16 16 C -0.09 -1.71 5.79 -104.20 -0.60 -2.31 16 17 C 0.21 3.89 3.22 -68.05 -0.22 3.67 16 18 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 19 N -0.74 -16.61 4.95 -53.54 -0.27 -16.88 16 20 C -0.25 -6.56 10.03 -15.06 -0.15 -6.71 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 22 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 23 N -0.93 -28.14 13.97 55.49 0.78 -27.37 16 24 Si 0.88 22.03 27.74 -169.99 -4.72 17.32 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.70 6.51 56.52 0.37 -6.34 16 28 C -0.19 -1.57 5.32 -90.62 -0.48 -2.05 16 29 C -0.18 -1.30 9.65 -26.73 -0.26 -1.56 16 30 C -0.17 -1.34 9.85 -26.73 -0.26 -1.60 16 31 H 0.06 0.57 6.74 -51.93 -0.35 0.22 16 32 H 0.06 0.63 6.96 -51.93 -0.36 0.27 16 33 H 0.09 1.31 5.51 -51.93 -0.29 1.03 16 34 H 0.37 3.66 9.05 45.56 0.41 4.07 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 4.38 8.42 -40.82 -0.34 4.03 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.13 2.69 7.67 -52.48 -0.40 2.29 16 44 H 0.36 8.51 5.46 -40.82 -0.22 8.29 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 0.73 5.89 -51.93 -0.31 0.43 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 50 H 0.10 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -33.04 397.98 -10.81 -43.86 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -6.83 Total: 18.50 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.71 Total: -15.04 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.24 Total: -53.95 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.79 Total: -16.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.32 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.04 -10.81 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717360162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.925 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds