Wall clock time and date at job start Wed Apr 1 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99709 * 2 1 4 4 C 1.53002 * 109.47026 * 125.00407 * 3 2 1 5 5 H 1.09000 * 109.46738 * 305.61464 * 4 3 2 6 6 C 1.50705 * 109.46886 * 185.61852 * 4 3 2 7 7 O 1.21278 * 119.99957 * 335.09834 * 6 4 3 8 8 N 1.34771 * 119.99862 * 155.10339 * 6 4 3 9 9 C 1.47153 * 120.98510 * 5.12462 * 8 6 4 10 10 C 1.53298 * 108.38344 * 230.51536 * 9 8 6 11 11 O 1.42960 * 109.22128 * 307.69523 * 10 9 8 12 12 C 1.42960 * 114.16871 * 62.58305 * 11 10 9 13 13 H 1.09002 * 109.50840 * 57.34293 * 12 11 10 14 14 C 1.53002 * 109.51152 * 177.44332 * 12 11 10 15 15 N 1.46500 * 109.46870 * 299.99963 * 14 12 11 16 16 C 1.36937 * 119.99656 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00355 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00225 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46979 * 60.00134 * 20 18 16 22 22 H 1.48497 * 109.47092 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47315 * 300.00242 * 20 18 16 24 24 C 1.47159 * 120.98128 * 184.84550 * 8 6 4 25 25 C 1.50699 * 109.47146 * 65.61863 * 4 3 2 26 26 C 1.38226 * 120.00347 * 59.72594 * 25 4 3 27 27 C 1.38233 * 120.00179 * 179.78785 * 26 25 4 28 28 C 1.38239 * 119.99777 * 0.46510 * 27 26 25 29 29 C 1.38233 * 120.00130 * 359.76160 * 28 27 26 30 30 C 1.38235 * 119.99904 * 0.03128 * 29 28 27 31 31 H 1.08001 * 120.00151 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00418 * 179.72677 * 1 2 3 33 33 H 1.07994 * 119.99802 * 179.97438 * 2 1 3 34 34 H 1.09002 * 109.47078 * 245.00097 * 3 2 1 35 35 H 1.08999 * 109.47623 * 4.99742 * 3 2 1 36 36 H 1.09003 * 109.67654 * 350.23752 * 9 8 6 37 37 H 1.08997 * 109.67990 * 110.75008 * 9 8 6 38 38 H 1.08995 * 109.51080 * 67.62389 * 10 9 8 39 39 H 1.09003 * 109.50823 * 187.77594 * 10 9 8 40 40 H 1.09002 * 109.47205 * 59.99986 * 14 12 11 41 41 H 1.08997 * 109.46411 * 179.97438 * 14 12 11 42 42 H 0.96998 * 120.00543 * 0.02562 * 15 14 12 43 43 H 0.96993 * 120.00332 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.67442 * 249.21018 * 24 8 6 45 45 H 1.08995 * 109.67629 * 9.75584 * 24 8 6 46 46 H 1.08000 * 120.00128 * 0.02562 * 26 25 4 47 47 H 1.08000 * 120.00686 * 180.25509 * 27 26 25 48 48 H 1.08004 * 120.00035 * 179.79350 * 28 27 26 49 49 H 1.08004 * 120.00281 * 180.02562 * 29 28 27 50 50 H 1.07994 * 120.00160 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4901 1.1360 2.1048 6 6 3.6877 2.6890 1.2632 7 8 3.7800 3.3784 0.2697 8 7 4.1689 3.1355 2.4403 9 6 4.1700 2.2746 3.6337 10 6 3.5342 3.0526 4.7916 11 8 4.1853 4.3187 4.9214 12 6 4.0473 5.1677 3.7795 13 1 2.9895 5.3300 3.5723 14 6 4.7258 6.5108 4.0563 15 7 4.0954 7.1465 5.2159 16 6 4.5387 8.3661 5.6532 17 1 5.3533 8.8592 5.1436 18 6 3.9410 8.9688 6.7517 19 7 2.9486 8.3678 7.3731 20 14 4.5462 10.6322 7.3487 21 1 4.3932 11.6334 6.2627 22 1 3.7491 11.0548 8.5281 23 1 5.9778 10.5304 7.7300 24 6 4.7144 4.4962 2.5685 25 6 4.0927 0.2773 0.9873 26 6 4.9118 0.3160 -0.1255 27 6 5.8848 -0.6499 -0.3014 28 6 6.0325 -1.6601 0.6307 29 6 5.2103 -1.7014 1.7412 30 6 4.2400 -0.7330 1.9193 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5401 -0.9353 -0.0045 33 1 1.8499 -0.9353 0.0004 34 1 2.6212 1.4027 -0.9314 35 1 1.3585 2.1317 0.0895 36 1 3.5912 1.3724 3.4360 37 1 5.1943 2.0046 3.8907 38 1 2.4747 3.2071 4.5879 39 1 3.6494 2.4874 5.7165 40 1 5.7838 6.3479 4.2618 41 1 4.6205 7.1573 3.1851 42 1 3.3640 6.7036 5.6740 43 1 2.5313 8.7887 8.1409 44 1 5.7927 4.4465 2.7204 45 1 4.4964 5.0656 1.6651 46 1 4.7940 1.1031 -0.8556 47 1 6.5275 -0.6174 -1.1687 48 1 6.7905 -2.4167 0.4916 49 1 5.3259 -2.4904 2.4696 50 1 3.5974 -0.7656 2.7866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733750557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:35 Heat of formation + Delta-G solvation = -36.863708 kcal Electronic energy + Delta-G solvation = -30363.489534 eV Core-core repulsion = 26355.781613 eV Total energy + Delta-G solvation = -4007.707921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89214 -40.29811 -39.33537 -36.68672 -36.60684 -35.79235 -33.99676 -33.33225 -31.89558 -31.75084 -29.88633 -29.25827 -27.53241 -25.58403 -24.78879 -24.03841 -23.45358 -22.83593 -22.03040 -20.55952 -20.01062 -19.24022 -18.40312 -17.96798 -17.70593 -17.09764 -16.74055 -16.66712 -16.24451 -16.13503 -15.89380 -15.58257 -15.50945 -15.24124 -15.02780 -14.73652 -14.45686 -14.24980 -14.17596 -13.98042 -13.71341 -13.66484 -13.43786 -13.18440 -12.83362 -12.74015 -12.66513 -12.61117 -12.30162 -12.09289 -11.98111 -11.95154 -11.89736 -11.79743 -11.62355 -11.21678 -10.95455 -10.89614 -10.27761 -9.81406 -9.66508 -9.61201 -9.01361 -7.93993 -5.23676 0.37002 0.50462 1.32761 1.47382 1.48264 1.51440 1.57367 1.77832 2.56490 2.73657 2.84068 3.36422 3.39468 3.53431 3.60330 3.77321 3.86444 3.92806 3.97849 4.06846 4.10356 4.15949 4.18850 4.24812 4.30336 4.33830 4.37328 4.45223 4.48207 4.61821 4.63217 4.69002 4.73340 4.79724 4.84848 4.93083 5.01704 5.04860 5.06869 5.12748 5.15791 5.22894 5.47750 5.57410 5.63507 5.64450 5.74238 5.87732 6.09608 6.21327 6.23198 6.28061 6.97091 7.33565 8.07144 8.32598 9.29534 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.002311 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.257417 B =12113.335371 C =12558.645807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 C -0.070 4.070 4 C -0.053 4.053 5 H 0.122 0.878 6 C 0.522 3.478 7 O -0.574 6.574 8 N -0.611 5.611 9 C 0.076 3.924 10 C 0.037 3.963 11 O -0.387 6.387 12 C 0.089 3.911 13 H 0.051 0.949 14 C 0.160 3.840 15 N -0.739 5.739 16 C -0.250 4.250 17 H 0.077 0.923 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.977 3.023 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.095 3.905 25 C -0.081 4.081 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.119 4.119 30 C -0.112 4.112 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.129 0.871 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.130 0.870 48 H 0.141 0.859 49 H 0.148 0.852 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -27.679 -14.141 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.171 4.171 3 C -0.108 4.108 4 C -0.074 4.074 5 H 0.139 0.861 6 C 0.312 3.688 7 O -0.453 6.453 8 N -0.344 5.344 9 C -0.046 4.046 10 C -0.040 4.040 11 O -0.305 6.305 12 C 0.030 3.970 13 H 0.069 0.931 14 C 0.033 3.967 15 N -0.382 5.382 16 C -0.381 4.381 17 H 0.095 0.905 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.806 3.194 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.203 1.203 24 C -0.028 4.028 25 C -0.082 4.082 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.141 4.141 29 C -0.136 4.136 30 C -0.129 4.129 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.124 0.876 47 H 0.148 0.852 48 H 0.159 0.841 49 H 0.166 0.834 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.116 -27.111 -14.512 30.771 hybrid contribution -0.148 1.138 0.244 1.173 sum 0.967 -25.973 -14.267 29.649 Atomic orbital electron populations 1.24044 0.95752 1.02636 0.99944 1.22790 0.95947 0.97499 1.00880 1.20552 0.96855 0.96454 0.96908 1.20305 0.95323 0.89181 1.02563 0.86058 1.21043 0.77301 0.88590 0.81900 1.90671 1.58976 1.59609 1.36044 1.48235 1.61133 1.14374 1.10656 1.22717 1.03758 0.94159 0.83924 1.23253 0.96081 0.84441 1.00202 1.88106 1.75783 1.27796 1.38853 1.22527 0.98497 0.90197 0.85740 0.93147 1.20759 0.95644 0.89967 0.90319 1.42377 1.41384 1.20744 1.33685 1.19627 1.13305 0.95731 1.09458 0.90514 1.25615 0.99230 1.02861 0.99071 1.69826 1.27677 1.40721 1.23720 0.85162 0.77492 0.79485 0.77300 1.20283 1.21994 1.20323 1.22155 0.98738 0.83267 0.98658 1.19343 0.96605 0.96096 0.96115 1.21097 0.96347 0.99128 0.97737 1.21338 0.98048 0.94916 1.00275 1.21498 0.99770 0.98432 0.94362 1.21470 0.94993 0.99106 0.98059 1.21316 0.98934 0.93842 0.98843 0.88741 0.86846 0.86556 0.91150 0.91752 0.85887 0.89495 0.92713 0.85327 0.95325 0.94052 0.79211 0.93947 0.89968 0.89021 0.87627 0.85164 0.84107 0.83423 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 14.32 67.78 0.97 -1.48 16 2 C -0.15 -2.22 9.10 25.65 0.23 -1.99 16 3 C -0.07 -1.30 4.46 29.85 0.13 -1.17 16 4 C -0.05 -0.94 1.56 -12.28 -0.02 -0.96 16 5 H 0.12 1.63 6.20 -2.39 -0.01 1.61 16 6 C 0.52 13.37 6.45 87.66 0.57 13.94 16 7 O -0.57 -18.96 15.70 -3.02 -0.05 -19.01 16 8 N -0.61 -15.20 3.01 -816.53 -2.46 -17.67 16 9 C 0.08 1.41 6.43 86.35 0.56 1.96 16 10 C 0.04 0.86 6.98 72.08 0.50 1.36 16 11 O -0.39 -13.47 10.13 -148.98 -1.51 -14.97 16 12 C 0.09 3.12 2.88 30.83 0.09 3.21 16 13 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 14 C 0.16 6.77 5.96 86.38 0.51 7.28 16 15 N -0.74 -39.64 5.49 -343.45 -1.89 -41.52 16 16 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -60.82 13.06 21.65 0.28 -60.53 16 20 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 C 0.10 2.81 5.94 86.49 0.51 3.33 16 25 C -0.08 -1.32 3.85 -19.87 -0.08 -1.39 16 26 C -0.12 -2.36 8.76 22.27 0.19 -2.16 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 28 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 29 C -0.12 -1.27 10.05 22.27 0.22 -1.04 16 30 C -0.11 -1.31 9.02 22.27 0.20 -1.11 16 31 H 0.09 1.28 7.84 -2.91 -0.02 1.26 16 32 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.12 1.54 7.79 -2.91 -0.02 1.51 16 34 H 0.07 1.51 7.10 -2.39 -0.02 1.49 16 35 H 0.06 1.32 7.79 -2.39 -0.02 1.30 16 36 H 0.12 1.44 4.41 -2.39 -0.01 1.43 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.38 21.59 7.54 -92.71 -0.70 20.89 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.47 16 44 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.09 2.87 7.12 -2.39 -0.02 2.85 16 46 H 0.11 2.35 7.53 -2.91 -0.02 2.33 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 48 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 50 H 0.15 0.98 7.53 -2.91 -0.02 0.96 16 Total: -1.00 -75.08 405.82 2.99 -72.09 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.23 Total: 33.38 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.36 Total: -0.85 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.07 Total: -119.72 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.56 Total: -33.98 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.08 2.99 -72.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733750557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.226 kcal (2) G-P(sol) polarization free energy of solvation -75.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds