Wall clock time and date at job start Wed Apr 1 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99865 * 2 1 4 4 C 1.52999 * 109.46819 * 124.99961 * 3 2 1 5 5 H 1.09001 * 109.47115 * 305.60996 * 4 3 2 6 6 C 1.50705 * 109.46776 * 185.61634 * 4 3 2 7 7 O 1.21284 * 119.99606 * 263.86794 * 6 4 3 8 8 N 1.34771 * 120.00112 * 83.86794 * 6 4 3 9 9 C 1.47158 * 120.98297 * 354.83736 * 8 6 4 10 10 C 1.53293 * 108.38589 * 129.48899 * 9 8 6 11 11 O 1.42959 * 109.22659 * 52.29815 * 10 9 8 12 12 C 1.42957 * 114.16771 * 297.42592 * 11 10 9 13 13 H 1.09004 * 109.55223 * 302.62364 * 12 11 10 14 14 C 1.53002 * 109.51571 * 182.50277 * 12 11 10 15 15 N 1.46505 * 109.47120 * 65.24508 * 14 12 11 16 16 C 1.36933 * 119.99814 * 179.72410 * 15 14 12 17 17 H 1.07993 * 120.00511 * 0.28804 * 16 15 14 18 18 C 1.38814 * 119.99800 * 180.28004 * 16 15 14 19 19 N 1.31626 * 120.00148 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00227 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47183 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47494 * 119.99433 * 20 18 16 23 23 H 1.48497 * 109.47367 * 239.99859 * 20 18 16 24 24 C 1.47151 * 120.98469 * 174.86010 * 8 6 4 25 25 C 1.50695 * 109.47500 * 65.61659 * 4 3 2 26 26 C 1.38237 * 119.99844 * 59.71903 * 25 4 3 27 27 C 1.38240 * 119.99462 * 179.76846 * 26 25 4 28 28 C 1.38230 * 120.00438 * 0.50854 * 27 26 25 29 29 C 1.38236 * 119.99800 * 359.75063 * 28 27 26 30 30 C 1.38233 * 120.00075 * 240.00405 * 25 4 3 31 31 H 1.08003 * 119.99965 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00097 * 0.02562 * 1 2 3 33 33 H 1.07993 * 119.99772 * 180.02562 * 2 1 3 34 34 H 1.09000 * 109.46990 * 4.99668 * 3 2 1 35 35 H 1.09001 * 109.46876 * 244.99735 * 3 2 1 36 36 H 1.09007 * 109.68020 * 249.21334 * 9 8 6 37 37 H 1.08998 * 109.68296 * 9.75916 * 9 8 6 38 38 H 1.08994 * 109.51047 * 172.22744 * 10 9 8 39 39 H 1.08997 * 109.50998 * 292.32468 * 10 9 8 40 40 H 1.09006 * 109.46638 * 305.25193 * 14 12 11 41 41 H 1.08994 * 109.47498 * 185.25133 * 14 12 11 42 42 H 0.97006 * 119.99469 * 0.02562 * 15 14 12 43 43 H 0.96996 * 120.00010 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.68646 * 110.78858 * 24 8 6 45 45 H 1.09003 * 109.70880 * 350.24992 * 24 8 6 46 46 H 1.07994 * 120.00036 * 0.02562 * 26 25 4 47 47 H 1.08004 * 119.99572 * 180.23783 * 27 26 25 48 48 H 1.07997 * 120.00336 * 179.72294 * 28 27 26 49 49 H 1.08003 * 120.00425 * 179.97438 * 29 28 27 50 50 H 1.08004 * 119.99792 * 359.97438 * 30 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4900 1.1361 2.1048 6 6 3.6878 2.6890 1.2633 7 8 4.7774 2.8685 0.7618 8 7 3.0607 3.7019 1.8934 9 6 1.6925 3.5410 2.4107 10 6 1.6703 4.0048 3.8717 11 8 2.2314 5.3168 3.9577 12 6 3.6026 5.3942 3.5610 13 1 4.1973 4.7123 4.1690 14 6 4.1103 6.8247 3.7529 15 7 4.1061 7.1571 5.1797 16 6 4.5280 8.3914 5.5963 17 1 4.8595 9.1214 4.8728 18 6 4.5295 8.7044 6.9487 19 7 4.1248 7.8149 7.8305 20 14 5.1043 10.3883 7.5171 21 1 5.5032 11.1991 6.3386 22 1 3.9995 11.0719 8.2364 23 1 6.2667 10.2331 8.4282 24 6 3.7238 5.0016 2.0841 25 6 4.0926 0.2773 0.9876 26 6 4.9117 0.3159 -0.1253 27 6 5.8851 -0.6500 -0.3008 28 6 6.0324 -1.6602 0.6311 29 6 5.2097 -1.7018 1.7412 30 6 4.2398 -0.7331 1.9194 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1316 0.0895 35 1 2.6213 1.4026 -0.9314 36 1 1.0039 4.1477 1.8225 37 1 1.3994 2.4927 2.3538 38 1 0.6418 4.0242 4.2318 39 1 2.2564 3.3168 4.4809 40 1 3.4599 7.5159 3.2168 41 1 5.1253 6.9052 3.3640 42 1 3.8084 6.5013 5.8296 43 1 4.1254 8.0337 8.7755 44 1 3.2398 5.7554 1.4630 45 1 4.7759 4.9212 1.8108 46 1 4.7940 1.1028 -0.8554 47 1 6.5276 -0.6176 -1.1684 48 1 6.7898 -2.4173 0.4917 49 1 5.3245 -2.4914 2.4692 50 1 3.5970 -0.7656 2.7868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733750560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:44 Heat of formation + Delta-G solvation = -14.930220 kcal Electronic energy + Delta-G solvation = -30263.066337 eV Core-core repulsion = 26256.309523 eV Total energy + Delta-G solvation = -4006.756813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.92442 -39.40851 -38.16697 -36.08723 -35.02566 -34.40256 -32.73290 -32.13101 -31.05990 -30.23357 -29.24647 -27.99325 -25.94272 -24.65945 -23.52516 -22.82664 -22.62024 -21.65402 -20.80370 -19.94220 -19.14322 -17.57911 -17.18476 -16.95444 -16.48800 -16.05786 -16.00098 -15.31815 -15.15473 -15.07652 -14.78298 -14.54395 -14.42888 -14.11625 -13.81087 -13.56583 -13.30319 -13.18837 -13.15089 -12.81651 -12.63988 -12.50281 -12.41138 -12.08703 -11.96746 -11.60794 -11.48620 -11.20329 -11.10602 -11.01207 -10.88839 -10.80468 -10.46657 -10.05610 -9.91825 -9.84817 -9.72926 -9.65154 -9.03001 -8.88818 -8.86563 -8.56216 -6.88564 -5.72326 -3.01000 1.13298 1.27389 1.88100 2.46942 2.74021 3.46239 3.51541 3.54005 3.63005 3.92039 4.15032 4.26499 4.57853 4.60755 4.65759 4.70092 4.71402 4.82987 4.85067 4.93208 4.97874 4.98215 5.06277 5.12231 5.24897 5.29696 5.35726 5.38802 5.45987 5.58149 5.59688 5.60790 5.64290 5.68929 5.79268 5.87488 5.89971 5.94626 6.25291 6.26343 6.27484 6.30648 6.36524 6.37163 6.44494 6.56173 6.69582 6.82498 7.20555 7.44685 7.73234 7.99340 8.45721 9.57510 10.14379 10.50231 11.50595 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002347 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.686899 B =11926.867247 C =12734.500227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.081 4.081 4 C -0.063 4.063 5 H 0.102 0.898 6 C 0.522 3.478 7 O -0.529 6.529 8 N -0.612 5.612 9 C 0.068 3.932 10 C 0.045 3.955 11 O -0.357 6.357 12 C 0.074 3.926 13 H 0.063 0.937 14 C 0.164 3.836 15 N -0.727 5.727 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.086 3.914 25 C -0.072 4.072 26 C -0.079 4.079 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.125 4.125 30 C -0.111 4.111 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -22.004 -17.774 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.167 4.167 3 C -0.118 4.118 4 C -0.084 4.084 5 H 0.120 0.880 6 C 0.310 3.690 7 O -0.405 6.405 8 N -0.346 5.346 9 C -0.055 4.055 10 C -0.033 4.033 11 O -0.275 6.275 12 C 0.015 3.985 13 H 0.081 0.919 14 C 0.035 3.965 15 N -0.371 5.371 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.036 4.036 25 C -0.072 4.072 26 C -0.097 4.097 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.143 4.143 30 C -0.129 4.129 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.221 0.779 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.783 -21.555 -17.992 28.666 hybrid contribution 0.259 0.420 0.654 0.819 sum -5.524 -21.135 -17.338 27.889 Atomic orbital electron populations 1.23889 0.95785 1.02035 1.01056 1.22852 0.95809 0.98124 0.99871 1.20742 0.97189 0.96499 0.97401 1.20289 0.95603 0.91278 1.01227 0.88044 1.20397 0.85472 0.85370 0.77803 1.90708 1.20762 1.83106 1.45882 1.48150 1.15879 1.13108 1.57438 1.22603 0.83353 1.02703 0.96819 1.22916 1.00241 0.86365 0.93810 1.88162 1.25480 1.26835 1.87015 1.22804 0.83232 1.00031 0.92437 0.91881 1.20617 0.97142 0.89761 0.88950 1.42238 1.78832 1.15650 1.00392 1.19270 1.35307 0.91033 0.91303 0.91074 1.24749 1.02283 0.98137 0.95880 1.69686 1.53522 1.33950 1.00911 0.86104 0.77865 0.83754 0.78391 1.20542 1.21878 1.21903 1.22345 1.00071 0.83608 0.97625 1.19274 0.97007 0.95291 0.95648 1.21011 0.94280 0.97222 0.97185 1.21145 0.98504 0.95047 0.99570 1.21153 0.99261 0.98616 0.94712 1.21068 0.96125 0.99117 0.98023 1.21017 0.98692 0.94688 0.98520 0.88347 0.88455 0.87065 0.90526 0.89938 0.90196 0.88962 0.87751 0.92810 0.95245 0.94663 0.77924 0.93615 0.90431 0.88081 0.85793 0.86169 0.86295 0.86130 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 14.32 29.01 0.42 -0.73 16 2 C -0.15 -1.02 9.10 -36.03 -0.33 -1.34 16 3 C -0.08 -0.62 4.80 -27.88 -0.13 -0.75 16 4 C -0.06 -0.59 1.50 -92.92 -0.14 -0.73 16 5 H 0.10 0.81 6.26 -51.93 -0.33 0.49 16 6 C 0.52 6.63 6.81 -10.99 -0.07 6.56 16 7 O -0.53 -8.47 14.08 5.55 0.08 -8.40 16 8 N -0.61 -7.55 3.02 -172.27 -0.52 -8.07 16 9 C 0.07 0.66 5.92 -3.53 -0.02 0.64 16 10 C 0.04 0.54 6.98 37.31 0.26 0.80 16 11 O -0.36 -6.14 10.33 -35.23 -0.36 -6.50 16 12 C 0.07 1.27 2.81 -26.58 -0.07 1.19 16 13 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.16 3.39 5.93 -4.04 -0.02 3.36 16 15 N -0.73 -19.10 5.55 -59.91 -0.33 -19.43 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 20 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 C 0.09 1.24 5.91 -3.53 -0.02 1.22 16 25 C -0.07 -0.74 3.91 -104.63 -0.41 -1.15 16 26 C -0.08 -0.86 7.82 -39.58 -0.31 -1.17 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 29 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 30 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 31 H 0.10 0.51 8.06 -52.48 -0.42 0.08 16 32 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 33 H 0.11 0.80 7.79 -52.49 -0.41 0.39 16 34 H 0.08 0.53 7.01 -51.93 -0.36 0.17 16 35 H 0.08 0.68 7.19 -51.93 -0.37 0.31 16 36 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.09 0.64 5.29 -51.93 -0.27 0.36 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.39 10.79 7.67 -40.82 -0.31 10.48 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.10 1.54 7.12 -51.93 -0.37 1.17 16 46 H 0.12 1.39 6.89 -52.49 -0.36 1.03 16 47 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 50 H 0.12 0.94 7.95 -52.48 -0.42 0.52 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -34.51 404.40 -9.84 -44.35 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.82 Total: 7.92 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.68 Total: -5.66 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.13 Total: -55.56 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.29 Total: -14.90 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.51 -9.84 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733750560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.416 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds