Wall clock time and date at job start Wed Apr 1 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99497 * 2 1 4 4 C 1.52997 * 109.47115 * 124.15712 * 3 2 1 5 5 H 1.09002 * 109.47319 * 305.83293 * 4 3 2 6 6 C 1.50706 * 109.47015 * 65.82841 * 4 3 2 7 7 O 1.21277 * 120.00102 * 34.61380 * 6 4 3 8 8 N 1.34782 * 119.99969 * 214.60779 * 6 4 3 9 9 C 1.46494 * 119.99967 * 175.07037 * 8 6 4 10 10 C 1.53004 * 109.47035 * 180.02562 * 9 8 6 11 11 O 1.42897 * 110.63748 * 61.86161 * 10 9 8 12 12 C 1.55154 * 110.71760 * 184.99907 * 10 9 8 13 13 C 1.54907 * 101.58065 * 153.86474 * 12 10 9 14 14 N 1.47417 * 104.83488 * 322.99148 * 13 12 10 15 15 C 1.36937 * 125.65216 * 204.09139 * 14 13 12 16 16 H 1.08004 * 119.99815 * 5.51827 * 15 14 13 17 17 C 1.38816 * 120.00222 * 185.52077 * 15 14 13 18 18 N 1.31618 * 119.99969 * 5.87739 * 17 15 14 19 19 Si 1.86797 * 120.00047 * 185.88147 * 17 15 14 20 20 H 1.48498 * 109.47223 * 84.99285 * 19 17 15 21 21 H 1.48495 * 109.46892 * 204.99577 * 19 17 15 22 22 H 1.48503 * 109.47026 * 324.99540 * 19 17 15 23 23 C 1.47028 * 108.70260 * 24.35377 * 14 13 12 24 24 C 1.50705 * 109.47569 * 185.82885 * 4 3 2 25 25 C 1.38227 * 119.99883 * 299.72992 * 24 4 3 26 26 C 1.38238 * 119.99859 * 179.74075 * 25 24 4 27 27 C 1.38228 * 120.00050 * 0.52850 * 26 25 24 28 28 C 1.38237 * 119.99858 * 359.74376 * 27 26 25 29 29 C 1.38231 * 119.99718 * 119.99528 * 24 4 3 30 30 H 1.08001 * 119.99732 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00021 * 359.97438 * 1 2 3 32 32 H 1.07990 * 120.00211 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47505 * 4.15906 * 3 2 1 34 34 H 1.09005 * 109.47297 * 244.15298 * 3 2 1 35 35 H 0.97002 * 119.99487 * 355.07109 * 8 6 4 36 36 H 1.09004 * 109.47244 * 59.99919 * 9 8 6 37 37 H 1.08999 * 109.47211 * 300.00267 * 9 8 6 38 38 H 0.96701 * 114.00168 * 303.13418 * 11 10 9 39 39 H 1.09005 * 111.00816 * 35.79060 * 12 10 9 40 40 H 1.09000 * 111.03925 * 271.95286 * 12 10 9 41 41 H 1.09002 * 110.36974 * 204.14923 * 13 12 10 42 42 H 1.09000 * 110.36311 * 81.83050 * 13 12 10 43 43 H 0.97000 * 120.00100 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.88354 * 118.12984 * 23 14 13 45 45 H 1.08995 * 109.88068 * 239.29953 * 23 14 13 46 46 H 1.08010 * 120.00348 * 359.97438 * 25 24 4 47 47 H 1.08004 * 119.99853 * 180.29339 * 26 25 24 48 48 H 1.07999 * 120.00551 * 179.77014 * 27 26 25 49 49 H 1.08001 * 119.99997 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.00368 * 0.02562 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0198 1.3420 1.1936 5 1 2.4638 1.1479 2.1109 6 6 4.0829 0.2883 1.0182 7 8 4.4965 0.0229 -0.0905 8 7 4.5741 -0.3590 2.0935 9 6 5.5274 -1.4570 1.9152 10 6 5.9238 -2.0155 3.2834 11 8 4.7830 -2.5466 3.9604 12 6 7.0273 -3.0962 3.1363 13 6 7.7293 -3.0135 4.5147 14 7 7.7181 -1.5800 4.8586 15 6 8.5910 -0.9565 5.7098 16 1 9.4247 -1.5038 6.1243 17 6 8.4043 0.3788 6.0399 18 7 7.3271 1.0139 5.6291 19 14 9.6818 1.2745 7.0670 20 1 10.7558 1.7910 6.1810 21 1 9.0387 2.4084 7.7782 22 1 10.2665 0.3360 8.0583 23 6 6.6106 -0.9317 4.1410 24 6 3.6676 2.7002 1.2768 25 6 4.4351 3.1653 0.2255 26 6 5.0249 4.4134 0.2995 27 6 4.8561 5.1916 1.4294 28 6 4.0932 4.7241 2.4831 29 6 3.4987 3.4784 2.4067 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3575 2.1323 0.0745 34 1 2.6331 1.3959 -0.9249 35 1 4.2963 -0.0979 2.9855 36 1 6.4152 -1.0876 1.4020 37 1 5.0661 -2.2458 1.3210 38 1 4.0640 -1.9107 4.0780 39 1 7.7169 -2.8435 2.3309 40 1 6.5906 -4.0824 2.9789 41 1 8.7539 -3.3780 4.4412 42 1 7.1745 -3.5862 5.2579 43 1 7.1968 1.9471 5.8594 44 1 5.8997 -0.5154 4.8548 45 1 6.9979 -0.1422 3.4970 46 1 4.5709 2.5553 -0.6554 47 1 5.6206 4.7788 -0.5239 48 1 5.3199 6.1652 1.4888 49 1 3.9617 5.3319 3.3660 50 1 2.9029 3.1130 3.2300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754762429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:52 Heat of formation + Delta-G solvation = -20.035265 kcal Electronic energy + Delta-G solvation = -30965.037142 eV Core-core repulsion = 26958.058957 eV Total energy + Delta-G solvation = -4006.978185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.40566 -39.01498 -38.22591 -35.62262 -35.04722 -33.97304 -32.65751 -32.20731 -30.86256 -29.61992 -28.76764 -27.92810 -25.98538 -24.61882 -23.43243 -22.58482 -21.74567 -20.55157 -20.12756 -19.83372 -19.48941 -17.56088 -16.91209 -16.75098 -16.49404 -15.67162 -15.44878 -15.26681 -14.87023 -14.60336 -14.47036 -14.06562 -13.98944 -13.84580 -13.58858 -13.33242 -12.99347 -12.97057 -12.78612 -12.65180 -12.22572 -12.14734 -12.00260 -11.65652 -11.61994 -11.39718 -11.21093 -11.04251 -10.84959 -10.82737 -10.63520 -10.47837 -10.29216 -10.05198 -9.79620 -9.71357 -9.50397 -9.28663 -8.88065 -8.86443 -8.67009 -8.65036 -6.86456 -5.75632 -3.08887 1.31038 1.45421 2.14759 2.76637 3.29914 3.38219 3.43379 3.44408 3.82914 4.45734 4.49963 4.57406 4.69434 4.80858 4.95485 5.00192 5.04935 5.10124 5.12434 5.19534 5.27164 5.32942 5.45754 5.50061 5.53097 5.55524 5.62434 5.65500 5.83459 5.90003 5.91905 5.96985 6.00043 6.08219 6.14758 6.29153 6.43953 6.47298 6.51015 6.55247 6.56359 6.57337 6.63637 6.66011 6.90196 7.01685 7.25629 7.46990 7.62137 7.70384 8.06456 8.19936 8.34232 9.16675 9.77995 10.43971 11.35847 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009039 B = 0.003969 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.785161 B = 7052.113702 C = 9320.879086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.074 4.074 4 C -0.060 4.060 5 H 0.097 0.903 6 C 0.527 3.473 7 O -0.541 6.541 8 N -0.719 5.719 9 C 0.109 3.891 10 C 0.086 3.914 11 O -0.550 6.550 12 C -0.115 4.115 13 C 0.136 3.864 14 N -0.603 5.603 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.163 3.837 24 C -0.080 4.080 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.117 4.117 29 C -0.104 4.104 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.367 0.633 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.024 0.976 43 H 0.252 0.748 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.127 0.873 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.520 3.216 -10.269 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C -0.111 4.111 4 C -0.081 4.081 5 H 0.115 0.885 6 C 0.312 3.688 7 O -0.419 6.419 8 N -0.371 5.371 9 C -0.015 4.015 10 C 0.045 3.955 11 O -0.355 6.355 12 C -0.154 4.154 13 C 0.010 3.990 14 N -0.329 5.329 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.037 3.963 24 C -0.081 4.081 25 C -0.122 4.122 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.122 4.122 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.237 0.763 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.213 0.787 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.145 0.855 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.809 2.660 -10.947 16.320 hybrid contribution 0.307 1.187 1.089 1.640 sum -11.502 3.846 -9.858 15.629 Atomic orbital electron populations 1.23824 0.95776 1.01740 1.01942 1.22981 0.95955 0.98588 0.99109 1.20677 0.97069 0.95645 0.97734 1.20250 0.94930 0.91496 1.01435 0.88475 1.20303 0.82464 0.81493 0.84512 1.90661 1.60445 1.65873 1.24900 1.45966 1.45981 1.35676 1.09428 1.21959 0.93147 0.88535 0.97900 1.22913 0.86520 0.96128 0.89946 1.86523 1.27395 1.41601 1.79960 1.22703 0.95622 0.97487 0.99564 1.21552 0.97306 0.87587 0.92564 1.44380 1.34025 1.02279 1.52225 1.19072 1.03594 0.93436 1.19448 0.90367 1.24770 0.97860 0.97026 1.00714 1.69892 1.26371 1.10357 1.50343 0.86138 0.80624 0.79347 0.79681 1.21595 1.21700 1.20731 1.21763 0.90630 0.90622 0.93243 1.19359 0.99238 0.94343 0.95137 1.21111 0.96432 0.95867 0.98748 1.21121 0.99842 0.94625 0.98303 1.21172 0.98642 0.99902 0.93872 1.21117 0.97626 0.96173 0.98584 1.21051 0.99804 0.94441 0.96894 0.88561 0.88611 0.87376 0.90523 0.89387 0.76263 0.90590 0.91348 0.78656 0.90282 0.90937 0.94078 0.95790 0.93803 0.92213 0.94031 0.85535 0.86157 0.86229 0.85938 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 14.32 29.01 0.42 -1.33 16 2 C -0.15 -1.55 9.09 -36.03 -0.33 -1.88 16 3 C -0.07 -0.79 4.63 -27.88 -0.13 -0.92 16 4 C -0.06 -0.70 2.34 -92.92 -0.22 -0.92 16 5 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 6 C 0.53 7.72 5.77 -10.98 -0.06 7.66 16 7 O -0.54 -9.41 15.63 5.56 0.09 -9.33 16 8 N -0.72 -10.53 5.12 -60.29 -0.31 -10.84 16 9 C 0.11 1.75 4.74 -4.04 -0.02 1.73 16 10 C 0.09 1.55 0.93 -88.78 -0.08 1.47 16 11 O -0.55 -9.44 13.10 -35.23 -0.46 -9.90 16 12 C -0.11 -2.03 6.26 -24.58 -0.15 -2.18 16 13 C 0.14 2.86 7.23 -2.53 -0.02 2.84 16 14 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 15 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 16 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 17 C -0.01 -0.21 5.46 -17.43 -0.10 -0.30 16 18 N -0.92 -26.13 10.42 55.49 0.58 -25.55 16 19 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.16 3.73 4.20 -3.06 -0.01 3.72 16 24 C -0.08 -1.02 4.77 -104.63 -0.50 -1.52 16 25 C -0.10 -1.37 8.86 -39.59 -0.35 -1.72 16 26 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 28 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 29 C -0.10 -1.27 9.67 -39.58 -0.38 -1.65 16 30 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 32 H 0.11 1.26 7.81 -52.49 -0.41 0.85 16 33 H 0.08 0.71 7.79 -51.93 -0.40 0.30 16 34 H 0.09 1.04 7.12 -51.93 -0.37 0.67 16 35 H 0.40 5.51 7.38 -40.82 -0.30 5.21 16 36 H 0.08 1.35 8.13 -51.93 -0.42 0.92 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.37 5.08 8.05 45.56 0.37 5.45 16 39 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 44 H 0.06 1.51 7.01 -51.93 -0.36 1.14 16 45 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 46 H 0.13 1.70 7.18 -52.48 -0.38 1.33 16 47 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 50 H 0.12 1.29 7.95 -52.49 -0.42 0.87 16 LS Contribution 407.83 15.07 6.15 6.15 Total: -1.00 -32.55 407.83 -10.10 -42.65 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.25 Total: 12.68 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.28 Total: -6.94 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.31 Total: -52.25 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.37 Total: -19.23 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.55 -10.10 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754762429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.617 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds