Wall clock time and date at job start Wed Apr 1 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99497 * 2 1 4 4 C 1.52997 * 109.47115 * 124.15712 * 3 2 1 5 5 H 1.09002 * 109.47319 * 305.83293 * 4 3 2 6 6 C 1.50706 * 109.47015 * 65.82841 * 4 3 2 7 7 O 1.21277 * 120.00102 * 34.61380 * 6 4 3 8 8 N 1.34782 * 119.99969 * 214.60779 * 6 4 3 9 9 C 1.46494 * 119.99967 * 175.07037 * 8 6 4 10 10 C 1.53004 * 109.47035 * 180.02562 * 9 8 6 11 11 O 1.42897 * 110.63748 * 61.86161 * 10 9 8 12 12 C 1.55154 * 110.71760 * 184.99907 * 10 9 8 13 13 C 1.54907 * 101.58065 * 153.86474 * 12 10 9 14 14 N 1.47417 * 104.83488 * 322.99148 * 13 12 10 15 15 C 1.36937 * 125.65216 * 204.09139 * 14 13 12 16 16 H 1.08004 * 119.99815 * 5.51827 * 15 14 13 17 17 C 1.38816 * 120.00222 * 185.52077 * 15 14 13 18 18 N 1.31618 * 119.99969 * 5.87739 * 17 15 14 19 19 Si 1.86797 * 120.00047 * 185.88147 * 17 15 14 20 20 H 1.48498 * 109.47223 * 84.99285 * 19 17 15 21 21 H 1.48495 * 109.46892 * 204.99577 * 19 17 15 22 22 H 1.48503 * 109.47026 * 324.99540 * 19 17 15 23 23 C 1.47028 * 108.70260 * 24.35377 * 14 13 12 24 24 C 1.50705 * 109.47569 * 185.82885 * 4 3 2 25 25 C 1.38227 * 119.99883 * 299.72992 * 24 4 3 26 26 C 1.38238 * 119.99859 * 179.74075 * 25 24 4 27 27 C 1.38228 * 120.00050 * 0.52850 * 26 25 24 28 28 C 1.38237 * 119.99858 * 359.74376 * 27 26 25 29 29 C 1.38231 * 119.99718 * 119.99528 * 24 4 3 30 30 H 1.08001 * 119.99732 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00021 * 359.97438 * 1 2 3 32 32 H 1.07990 * 120.00211 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47505 * 4.15906 * 3 2 1 34 34 H 1.09005 * 109.47297 * 244.15298 * 3 2 1 35 35 H 0.97002 * 119.99487 * 355.07109 * 8 6 4 36 36 H 1.09004 * 109.47244 * 59.99919 * 9 8 6 37 37 H 1.08999 * 109.47211 * 300.00267 * 9 8 6 38 38 H 0.96701 * 114.00168 * 303.13418 * 11 10 9 39 39 H 1.09005 * 111.00816 * 35.79060 * 12 10 9 40 40 H 1.09000 * 111.03925 * 271.95286 * 12 10 9 41 41 H 1.09002 * 110.36974 * 204.14923 * 13 12 10 42 42 H 1.09000 * 110.36311 * 81.83050 * 13 12 10 43 43 H 0.97000 * 120.00100 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.88354 * 118.12984 * 23 14 13 45 45 H 1.08995 * 109.88068 * 239.29953 * 23 14 13 46 46 H 1.08010 * 120.00348 * 359.97438 * 25 24 4 47 47 H 1.08004 * 119.99853 * 180.29339 * 26 25 24 48 48 H 1.07999 * 120.00551 * 179.77014 * 27 26 25 49 49 H 1.08001 * 119.99997 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.00368 * 0.02562 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0198 1.3420 1.1936 5 1 2.4638 1.1479 2.1109 6 6 4.0829 0.2883 1.0182 7 8 4.4965 0.0229 -0.0905 8 7 4.5741 -0.3590 2.0935 9 6 5.5274 -1.4570 1.9152 10 6 5.9238 -2.0155 3.2834 11 8 4.7830 -2.5466 3.9604 12 6 7.0273 -3.0962 3.1363 13 6 7.7293 -3.0135 4.5147 14 7 7.7181 -1.5800 4.8586 15 6 8.5910 -0.9565 5.7098 16 1 9.4247 -1.5038 6.1243 17 6 8.4043 0.3788 6.0399 18 7 7.3271 1.0139 5.6291 19 14 9.6818 1.2745 7.0670 20 1 10.7558 1.7910 6.1810 21 1 9.0387 2.4084 7.7782 22 1 10.2665 0.3360 8.0583 23 6 6.6106 -0.9317 4.1410 24 6 3.6676 2.7002 1.2768 25 6 4.4351 3.1653 0.2255 26 6 5.0249 4.4134 0.2995 27 6 4.8561 5.1916 1.4294 28 6 4.0932 4.7241 2.4831 29 6 3.4987 3.4784 2.4067 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3575 2.1323 0.0745 34 1 2.6331 1.3959 -0.9249 35 1 4.2963 -0.0979 2.9855 36 1 6.4152 -1.0876 1.4020 37 1 5.0661 -2.2458 1.3210 38 1 4.0640 -1.9107 4.0780 39 1 7.7169 -2.8435 2.3309 40 1 6.5906 -4.0824 2.9789 41 1 8.7539 -3.3780 4.4412 42 1 7.1745 -3.5862 5.2579 43 1 7.1968 1.9471 5.8594 44 1 5.8997 -0.5154 4.8548 45 1 6.9979 -0.1422 3.4970 46 1 4.5709 2.5553 -0.6554 47 1 5.6206 4.7788 -0.5239 48 1 5.3199 6.1652 1.4888 49 1 3.9617 5.3319 3.3660 50 1 2.9029 3.1130 3.2300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754762429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:50 Heat of formation + Delta-G solvation = -40.697173 kcal Electronic energy + Delta-G solvation = -30965.933110 eV Core-core repulsion = 26958.058957 eV Total energy + Delta-G solvation = -4007.874152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.53506 -40.31923 -39.46617 -36.82415 -36.40877 -35.27383 -34.13345 -33.52205 -31.79623 -31.27244 -29.89329 -29.38170 -27.66732 -25.95404 -24.80060 -23.53142 -22.90427 -22.08199 -21.36322 -21.15892 -20.52480 -19.05372 -18.46874 -17.86674 -17.79987 -17.01201 -16.53919 -16.42044 -16.16701 -15.94064 -15.70570 -15.53029 -15.43740 -15.11665 -14.85592 -14.45529 -14.29283 -14.22841 -13.97292 -13.76012 -13.64030 -13.50107 -13.33995 -13.03213 -12.97656 -12.74982 -12.54289 -12.37201 -12.21695 -12.13487 -11.97960 -11.94517 -11.77628 -11.72472 -11.67887 -10.93233 -10.87088 -10.70788 -10.28747 -10.14110 -9.82004 -9.61499 -8.89123 -7.85039 -5.20625 0.35915 0.49868 1.39537 1.45485 1.47111 1.54648 1.60376 2.13644 2.48632 2.87057 3.17423 3.33061 3.42840 3.60529 3.72064 3.87992 3.88977 3.90348 3.96285 4.11193 4.19382 4.21684 4.24515 4.30668 4.42935 4.47514 4.52423 4.62800 4.67695 4.69714 4.80134 4.84851 4.94548 5.00526 5.05060 5.06762 5.11650 5.15158 5.29825 5.33329 5.37521 5.51499 5.55435 5.61684 5.62462 5.67374 5.75979 5.87810 6.09429 6.18444 6.44225 6.75309 7.09492 7.16572 7.75861 8.40896 9.23913 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009039 B = 0.003969 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.785161 B = 7052.113702 C = 9320.879086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 C -0.066 4.066 4 C -0.052 4.052 5 H 0.117 0.883 6 C 0.526 3.474 7 O -0.571 6.571 8 N -0.717 5.717 9 C 0.120 3.880 10 C 0.105 3.895 11 O -0.552 6.552 12 C -0.107 4.107 13 C 0.129 3.871 14 N -0.626 5.626 15 C -0.248 4.248 16 H 0.079 0.921 17 C -0.058 4.058 18 N -0.941 5.941 19 Si 0.973 3.027 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.272 1.272 23 C 0.177 3.823 24 C -0.089 4.089 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.127 4.127 29 C -0.114 4.114 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.382 0.618 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.247 0.753 44 H 0.032 0.968 45 H 0.006 0.994 46 H 0.116 0.884 47 H 0.135 0.865 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 3.148 -10.071 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C -0.103 4.103 4 C -0.073 4.073 5 H 0.135 0.865 6 C 0.313 3.687 7 O -0.450 6.450 8 N -0.369 5.369 9 C -0.004 4.004 10 C 0.063 3.937 11 O -0.359 6.359 12 C -0.146 4.146 13 C 0.004 3.996 14 N -0.353 5.353 15 C -0.377 4.377 16 H 0.097 0.903 17 C -0.252 4.252 18 N -0.589 5.589 19 Si 0.801 3.199 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.197 1.197 23 C 0.052 3.948 24 C -0.090 4.090 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.143 4.143 28 C -0.145 4.145 29 C -0.132 4.132 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.024 0.976 46 H 0.134 0.866 47 H 0.153 0.847 48 H 0.159 0.841 49 H 0.158 0.842 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.860 2.569 -10.742 16.952 hybrid contribution 0.613 1.194 1.048 1.702 sum -12.248 3.762 -9.693 16.066 Atomic orbital electron populations 1.24030 0.95148 1.02979 0.99133 1.22850 0.96526 0.97711 1.01707 1.20607 0.96882 0.96507 0.96352 1.20271 0.94169 0.89915 1.02971 0.86453 1.20823 0.82520 0.81510 0.83819 1.90642 1.61543 1.66834 1.26026 1.45964 1.45609 1.35465 1.09852 1.21739 0.92957 0.89219 0.96525 1.22567 0.86718 0.94661 0.89706 1.86494 1.27457 1.42059 1.79899 1.22707 0.95305 0.98827 0.97722 1.21720 0.98239 0.85319 0.94302 1.44719 1.34230 1.04276 1.52053 1.19420 1.04263 0.94062 1.19917 0.90293 1.25542 0.99744 0.97774 1.02148 1.70086 1.27602 1.10096 1.51146 0.85182 0.78303 0.78070 0.78302 1.21560 1.21809 1.19668 1.21493 0.89612 0.91342 0.92385 1.19486 0.99449 0.94781 0.95270 1.21188 0.97462 0.96472 0.98874 1.21384 0.99916 0.94436 0.99177 1.21489 0.98506 1.00767 0.93560 1.21458 0.97365 0.96408 0.99300 1.21331 1.00068 0.94641 0.97127 0.87528 0.87088 0.89026 0.88826 0.91150 0.75701 0.92425 0.89865 0.76942 0.89301 0.88058 0.93276 0.96200 0.94355 0.94999 0.97583 0.86595 0.84677 0.84144 0.84179 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 14.32 67.78 0.97 -1.78 16 2 C -0.17 -3.38 9.09 25.64 0.23 -3.15 16 3 C -0.07 -1.37 4.63 29.85 0.14 -1.23 16 4 C -0.05 -1.20 2.34 -12.28 -0.03 -1.23 16 5 H 0.12 2.18 7.87 -2.39 -0.02 2.16 16 6 C 0.53 15.50 5.77 87.66 0.51 16.00 16 7 O -0.57 -20.27 15.63 -3.02 -0.05 -20.32 16 8 N -0.72 -20.96 5.12 -463.05 -2.37 -23.33 16 9 C 0.12 3.82 4.74 86.38 0.41 4.23 16 10 C 0.11 3.70 0.93 -9.60 -0.01 3.69 16 11 O -0.55 -18.10 13.10 -148.98 -1.95 -20.05 16 12 C -0.11 -3.60 6.26 31.98 0.20 -3.40 16 13 C 0.13 5.34 7.23 86.86 0.63 5.97 16 14 N -0.63 -32.06 3.39 -691.97 -2.35 -34.41 16 15 C -0.25 -13.88 10.27 84.03 0.86 -13.02 16 16 H 0.08 4.27 7.84 -2.91 -0.02 4.25 16 17 C -0.06 -3.26 5.46 84.86 0.46 -2.80 16 18 N -0.94 -54.31 10.42 21.65 0.23 -54.08 16 19 Si 0.97 45.37 29.56 68.60 2.03 47.39 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.18 8.27 4.20 86.73 0.36 8.63 16 24 C -0.09 -2.26 4.77 -19.87 -0.09 -2.35 16 25 C -0.12 -3.29 8.86 22.27 0.20 -3.09 16 26 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 27 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 28 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 29 C -0.11 -2.68 9.67 22.27 0.22 -2.46 16 30 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.11 1.40 7.84 -2.91 -0.02 1.38 16 32 H 0.09 2.12 7.81 -2.92 -0.02 2.10 16 33 H 0.09 1.59 7.79 -2.39 -0.02 1.57 16 34 H 0.07 1.70 7.12 -2.38 -0.02 1.68 16 35 H 0.41 11.10 7.38 -92.71 -0.68 10.42 16 36 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.38 10.03 8.05 -74.06 -0.60 9.43 16 39 H 0.09 2.82 8.04 -2.38 -0.02 2.80 16 40 H 0.10 2.86 8.14 -2.39 -0.02 2.85 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 44 H 0.03 1.65 7.01 -2.39 -0.02 1.64 16 45 H 0.01 0.32 7.50 -2.39 -0.02 0.30 16 46 H 0.12 3.29 7.18 -2.91 -0.02 3.27 16 47 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 48 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 49 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 50 H 0.14 2.71 7.95 -2.91 -0.02 2.69 16 Total: -1.00 -70.78 407.83 0.92 -69.86 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.34 Total: 39.23 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 5.73 Total: -4.29 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.50 Total: -111.82 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.00 Total: -40.37 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.78 0.92 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754762429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.162 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds