Wall clock time and date at job start Wed Apr 1 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99491 * 2 1 4 4 C 1.53003 * 109.46825 * 125.00512 * 3 2 1 5 5 H 1.09003 * 109.47010 * 304.99556 * 4 3 2 6 6 C 1.50700 * 109.47350 * 185.00024 * 4 3 2 7 7 O 1.21279 * 119.99912 * 240.00463 * 6 4 3 8 8 N 1.34779 * 119.99900 * 59.99442 * 6 4 3 9 9 C 1.46501 * 119.99765 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47159 * 180.02562 * 9 8 6 11 11 O 1.42901 * 110.77937 * 298.21613 * 10 9 8 12 12 C 1.55156 * 110.72207 * 174.97126 * 10 9 8 13 13 C 1.54908 * 101.58197 * 206.13348 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.36938 * 125.64968 * 155.89174 * 14 13 12 16 16 H 1.07998 * 119.99809 * 179.97438 * 15 14 13 17 17 C 1.38806 * 119.99771 * 359.97251 * 15 14 13 18 18 N 1.31620 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99586 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47460 * 59.99975 * 19 17 15 21 21 H 1.48505 * 109.47090 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47333 * 299.99702 * 19 17 15 23 23 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 24 24 C 1.50691 * 109.47358 * 64.99766 * 4 3 2 25 25 C 1.38238 * 119.99941 * 59.72666 * 24 4 3 26 26 C 1.38238 * 119.99784 * 179.81370 * 25 24 4 27 27 C 1.38235 * 120.00234 * 0.41509 * 26 25 24 28 28 C 1.38240 * 120.00059 * 359.81595 * 27 26 25 29 29 C 1.38238 * 120.00131 * 239.99955 * 24 4 3 30 30 H 1.08005 * 119.99675 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00250 * 359.97438 * 1 2 3 32 32 H 1.07993 * 119.99985 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47618 * 5.00898 * 3 2 1 34 34 H 1.08997 * 109.47192 * 245.00010 * 3 2 1 35 35 H 0.96995 * 120.00220 * 0.02562 * 8 6 4 36 36 H 1.08993 * 109.47638 * 60.00210 * 9 8 6 37 37 H 1.09009 * 109.46891 * 299.99959 * 9 8 6 38 38 H 0.96700 * 113.99903 * 61.77942 * 11 10 9 39 39 H 1.08999 * 111.00338 * 324.21288 * 12 10 9 40 40 H 1.09003 * 110.99778 * 88.06071 * 12 10 9 41 41 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 42 42 H 1.08998 * 110.36772 * 278.17049 * 13 12 10 43 43 H 0.97000 * 119.99734 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88059 * 241.64343 * 23 14 13 45 45 H 1.08994 * 109.87878 * 120.47623 * 23 14 13 46 46 H 1.07996 * 119.99657 * 359.97438 * 25 24 4 47 47 H 1.07998 * 119.99592 * 180.21220 * 26 25 24 48 48 H 1.07995 * 120.00219 * 179.79711 * 27 26 25 49 49 H 1.07994 * 119.99948 * 179.97438 * 28 27 26 50 50 H 1.08001 * 119.99813 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.6990 2.6840 1.2542 7 8 4.9051 2.7725 1.1631 8 7 2.9524 3.7937 1.4202 9 6 3.5978 5.1070 1.4902 10 6 2.5330 6.1892 1.6806 11 8 1.6326 6.2150 0.5713 12 6 3.1927 7.5786 1.8848 13 6 2.1051 8.3225 2.6994 14 7 1.5396 7.2988 3.5969 15 6 0.9081 7.5421 4.7874 16 1 0.5266 6.7196 5.3742 17 6 0.7585 8.8458 5.2399 18 7 1.2231 9.8481 4.5244 19 14 -0.1023 9.1776 6.8642 20 1 0.6328 8.4991 7.9617 21 1 -0.1328 10.6404 7.1185 22 1 -1.4919 8.6572 6.8034 23 6 1.7655 5.9734 3.0019 24 6 4.0839 0.2673 0.9949 25 6 4.9035 0.2916 -0.1181 26 6 5.8682 -0.6839 -0.2874 27 6 6.0076 -1.6886 0.6518 28 6 5.1848 -1.7156 1.7624 29 6 4.2227 -0.7379 1.9336 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0897 34 1 2.6212 1.4027 -0.9313 35 1 1.9878 3.7229 1.4933 36 1 4.1442 5.2932 0.5657 37 1 4.2903 5.1271 2.3319 38 1 1.1368 5.3940 0.4479 39 1 4.1174 7.4920 2.4553 40 1 3.3700 8.0711 0.9287 41 1 2.5516 9.1303 3.2791 42 1 1.3339 8.7124 2.0351 43 1 1.1181 10.7592 4.8405 44 1 0.8096 5.4897 2.8007 45 1 2.3588 5.3593 3.6793 46 1 4.7918 1.0742 -0.8539 47 1 6.5107 -0.6630 -1.1552 48 1 6.7591 -2.4526 0.5178 49 1 5.2935 -2.5007 2.4959 50 1 3.5797 -0.7591 2.8011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754762430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:57 Heat of formation + Delta-G solvation = -15.161636 kcal Electronic energy + Delta-G solvation = -30201.458120 eV Core-core repulsion = 26194.691271 eV Total energy + Delta-G solvation = -4006.766848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.62498 -39.20233 -38.28325 -35.99482 -35.17426 -34.18042 -32.59704 -32.10502 -31.05397 -29.82831 -29.12911 -27.95423 -25.84387 -24.89286 -23.56895 -22.76715 -21.94886 -20.64886 -20.08532 -19.91238 -19.73063 -17.65537 -17.13306 -16.94662 -16.33415 -16.04329 -15.78262 -15.11504 -15.04015 -14.79777 -14.74644 -14.17800 -14.13169 -13.89172 -13.76373 -13.50339 -13.28512 -13.15170 -12.93716 -12.80471 -12.44664 -12.16484 -12.04596 -11.97947 -11.61073 -11.44879 -11.17315 -11.11261 -11.06007 -10.88569 -10.78078 -10.38515 -10.20031 -10.10794 -9.82023 -9.74522 -9.63378 -9.43268 -9.10824 -9.01657 -8.86068 -8.67665 -6.89040 -5.68882 -3.11520 1.17031 1.28394 1.96248 2.57685 3.06480 3.38037 3.42104 3.43734 3.68823 4.22216 4.39534 4.44166 4.48472 4.66743 4.76734 4.78493 4.84407 4.90805 4.97480 5.00957 5.07284 5.16117 5.29065 5.37732 5.38010 5.43239 5.47182 5.60099 5.62674 5.65128 5.81191 5.86443 5.89439 5.96302 6.20935 6.28640 6.31261 6.33627 6.36631 6.37623 6.42485 6.46828 6.47159 6.57162 6.60374 6.83981 7.38031 7.52959 7.57759 7.81335 7.89533 8.14016 8.31605 9.17369 9.77816 10.41992 11.34774 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002349 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.760862 B =11918.526429 C =12073.231578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.065 4.065 5 H 0.107 0.893 6 C 0.518 3.482 7 O -0.529 6.529 8 N -0.725 5.725 9 C 0.106 3.894 10 C 0.105 3.895 11 O -0.542 6.542 12 C -0.128 4.128 13 C 0.156 3.844 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.117 3.883 24 C -0.061 4.061 25 C -0.084 4.084 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.124 4.124 29 C -0.112 4.112 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.363 0.637 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.022 0.978 45 H 0.030 0.970 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -22.238 -10.833 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.169 4.169 3 C -0.120 4.120 4 C -0.087 4.087 5 H 0.125 0.875 6 C 0.303 3.697 7 O -0.405 6.405 8 N -0.378 5.378 9 C -0.018 4.018 10 C 0.064 3.936 11 O -0.347 6.347 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.326 5.326 15 C -0.355 4.355 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.746 3.254 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.010 4.010 24 C -0.061 4.061 25 C -0.102 4.102 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.142 4.142 29 C -0.130 4.130 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.209 0.791 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.048 0.952 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.098 -21.336 -10.813 24.457 hybrid contribution -1.197 -0.495 0.999 1.636 sum 3.902 -21.831 -9.814 24.251 Atomic orbital electron populations 1.23906 0.95826 1.02102 1.00821 1.22840 0.95816 0.98132 1.00097 1.20776 0.97208 0.96548 0.97434 1.20340 0.95602 0.91283 1.01435 0.87523 1.20378 0.87536 0.85485 0.76294 1.90732 1.14078 1.86802 1.48849 1.45995 1.10640 1.06666 1.74479 1.22076 0.96074 0.80774 1.02905 1.22564 0.88804 0.95897 0.86360 1.86636 1.57742 1.40499 1.49775 1.23053 0.99864 0.92875 1.00926 1.21942 0.91676 0.92495 0.90742 1.44409 1.67569 0.99515 1.21083 1.19002 1.29377 0.92363 0.94743 0.90594 1.24798 1.01257 0.95416 0.99027 1.69781 1.50697 0.98430 1.37946 0.86139 0.79248 0.77022 0.82977 1.21119 1.21495 1.21198 1.21923 0.96289 0.90646 0.92151 1.19225 0.96625 0.95009 0.95277 1.20897 0.94689 0.97494 0.97148 1.21103 0.98426 0.95027 0.99472 1.21127 0.99376 0.98716 0.94752 1.21066 0.96134 0.98998 0.97985 1.21014 0.98729 0.94701 0.98514 0.88435 0.88320 0.87162 0.90472 0.90073 0.76787 0.90754 0.90331 0.79093 0.90594 0.91066 0.87426 0.96373 0.93560 0.96010 0.95188 0.86387 0.86228 0.86347 0.86197 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 14.32 29.01 0.42 -0.88 16 2 C -0.15 -1.11 9.09 -36.03 -0.33 -1.44 16 3 C -0.08 -0.63 4.97 -27.88 -0.14 -0.77 16 4 C -0.07 -0.61 2.37 -92.93 -0.22 -0.83 16 5 H 0.11 0.89 7.88 -51.93 -0.41 0.48 16 6 C 0.52 6.45 7.03 -10.98 -0.08 6.38 16 7 O -0.53 -8.61 15.13 5.56 0.08 -8.53 16 8 N -0.73 -8.47 5.04 -60.29 -0.30 -8.77 16 9 C 0.11 1.51 4.74 -4.04 -0.02 1.49 16 10 C 0.11 1.75 0.91 -88.78 -0.08 1.67 16 11 O -0.54 -8.68 13.10 -35.23 -0.46 -9.14 16 12 C -0.13 -2.44 6.26 -24.58 -0.15 -2.59 16 13 C 0.16 3.80 5.88 -2.53 -0.01 3.79 16 14 N -0.60 -15.14 3.39 -170.07 -0.58 -15.72 16 15 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 19 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.12 2.30 6.03 -3.06 -0.02 2.28 16 24 C -0.06 -0.63 3.64 -104.63 -0.38 -1.01 16 25 C -0.08 -0.91 7.88 -39.58 -0.31 -1.22 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 28 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 29 C -0.11 -1.08 9.67 -39.58 -0.38 -1.46 16 30 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 31 H 0.10 0.63 7.84 -52.49 -0.41 0.21 16 32 H 0.11 0.84 7.77 -52.49 -0.41 0.43 16 33 H 0.08 0.51 7.08 -51.93 -0.37 0.14 16 34 H 0.08 0.65 7.21 -51.93 -0.37 0.27 16 35 H 0.40 3.78 6.75 -40.82 -0.28 3.51 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.23 8.13 -51.92 -0.42 0.81 16 38 H 0.36 4.22 8.14 45.56 0.37 4.59 16 39 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 45 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 46 H 0.12 1.26 7.48 -52.49 -0.39 0.87 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 50 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -33.48 405.10 -9.93 -43.41 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.16 Total: 7.86 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.15 Total: -5.93 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.32 Total: -50.64 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.38 Total: -17.67 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.48 -9.93 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754762430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.248 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds